BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471398
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12480.1 | Symbols: OZS1, SLAC1, RCD3, CDI3 | C4-dicarboxyla... 2977 0.0
> AT1G12480.1 | Symbols: OZS1, SLAC1, RCD3, CDI3 | C4-dicarboxylate
transporter/malic acid transport protein | chr1:4257268-4259300
REVERSE LENGTH=1881
Length=1881
Score = 2977 bits (1612), Expect = 0.0
Identities = 1787/1866 (96%), Gaps = 33/1866 (2%)
Strand=Plus/Plus
Query 1 AAATATATCTTCTCGTGTGTTTC-AAGTATCATATTGCTCTGATCAATGGAGAGGAAACA 59
||| |||||||||| |||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 6 AAAAATATCTTCTCTTGTGTTTCAAATTATCAAATTGCTCTGATCAATGGAGAGGAAACA 65
Query 60 ATCAAATGGTCATTCCACTTTCGCCGACATCAATGAAGTTGAAGAAGAAGCAGATCAAGA 119
||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 66 GTCAAATGCTCATTCCACTTTCGCCGACATCAATGAAGTTGAAGATGAAGCAGAGCAAGA 125
Query 120 ACCT-CAACAGCAAGAG---AACAACAACAAGAGATTCTCTGGAAACAGAGGACCAAACC 175
| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 126 A-CTGCAACAGCAAGAGAACAACAACAACAAGAGATTCTCTGGAAACAGAGGACCAAACC 184
Query 176 GAGGGAAACAAAGACCATTCAGAGGTTTCAGCAGACAGGTTTCGCTAGAGACAGGTTTCT 235
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 185 GAGGGAAACAAAGACCATTCAGAGGTTTTAGCAGACAGGTTTCGCTAGAGACAGGTTTCT 244
Query 236 CAGTGCTTAACAGAGAATCTAGAGAAAGAGATGACAAAAAGAGTTTACCGAGGAGTGGTC 295
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CAGTGCTCAACAGAGAATCTAGAGAAAGAGATGACAAAAAGAGTTTACCGAGGAGTGGTC 304
Query 296 GTAGCTTTGGCGGGTTTGAATCAGGTGGAATCATCAACGGTGGAGATGGTCGGAAAACAG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GTAGCTTTGGCGGGTTTGAATCAGGTGGAATCATCAACGGTGGAGATGGTCGGAAAACAG 364
Query 356 ATTTCAGTATGTTTAGGACTAAATCAACGCTCAGCAAACAAAAGTCTCTATTGCCTTCTA 415
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 365 ATTTTAGTATGTTTAGGACTAAATCAACGCTCAGCAAACAAAAGTCTTTATTGCCTTCTA 424
Query 416 TAATAAGGGAGAGAGACATTGAGAATTCTTTAAGAACTGAAGATGGTGAGACCAAAGATG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TAATAAGGGAGAGAGACATTGAGAATTCTTTAAGAACTGAAGATGGTGAGACCAAAGATG 484
Query 476 ATTCTATAAATGAAAATGTTTCTGCAGGAAGATACTTTGCTGCTCTTAGAGGACCTGAAT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 ATTCTATAAATGAAAATGTTTCTGCAGGAAGATACTTTGCTGCTCTTAGAGGACCTGAAT 544
Query 536 TGGATGAAGTCAAGGACAATGAAGATATTCTGCTTCCAAAAGAGGAGCAATGGCCGTTTC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGGATGAAGTCAAGGACAATGAAGATATTCTGCTTCCAAAAGAGGAGCAATGGCCGTTTC 604
Query 596 TTCTAAGGTTCCCGATTGGATGCTTCGGTATCTGTTTGGGACTTAGCAGTCAAGCTGTCT 655
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TCCTAAGGTTCCCAATTGGATGCTTCGGTATCTGTTTGGGACTTAGCAGTCAAGCTGTCT 664
Query 656 TGTGGCTTGCCCTAGCGAAAAGTCCTTCTACAAACTTTTTACACATCACACCATTGATTA 715
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 665 TGTGGCTTGCCCTAGCGAAAAGTCCTGCAACAAACTTTTTACACATCACACCATTGATTA 724
Query 716 ACTTAGTTGTATGGCTATTTTCACTGGTAGTTTTAGTCTCTGTCTCCTTCACTTACATAC 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 725 ACTTAGTTGTATGGCTATTTTCACTGGTAGTTTTAGTCTCTGTGTCCTTCACTTACATAC 784
Query 776 TCAAATGTATCTTCTACTTTGAAGCTGTCAAAAGAGAGTATTTTCATCCTGTTCGAGTCA 835
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TCAAATGCATCTTCTACTTTGAAGCTGTCAAAAGAGAGTATTTTCATCCTGTTCGAGTCA 844
Query 836 ACTTCTTCTTCGCTCCTTGGGTGGTTTGCATGTTCCTAGCCATTAGCGTACCTCCCGTGT 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 845 ACTTCTTCTTCGCTCCTTGGGTGGTTTGCATGTTCCTAGCCATTAGCGTACCTCCCATGT 904
Query 896 TCT---C--ACC-AAAATACCTCCATCCCGCCATTTGGTGTGTTTTCATGGGTCCTTATT 949
||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TCTCACCAAACCGAAAATACCTCCATCCCGCCATTTGGTGTGTTTTCATGGGTCCTTATT 964
Query 950 TCCTCCTCGAGCTAAAGATCTACGGGCAATGGCTTTCGGGAGGGAAGAGGCGACTATGCA 1009
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TCTTCCTCGAGCTAAAGATCTACGGGCAATGGCTTTCGGGAGGGAAGAGGCGACTATGCA 1024
Query 1010 AAGTCGCAAACCCATCTTCTCATCTTTCTGTTGTAGGGAATTTCGTCGGGGCCATCTTAG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AAGTCGCAAACCCATCTTCTCATCTTTCTGTTGTAGGGAATTTCGTCGGGGCCATCTTAG 1084
Query 1070 CTTCAAAAGTTGGATGGGATGAAGTAGCTAAGTTTCTATGGGCAGTAGGTTTTGCACATT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 CTTCAAAAGTTGGATGGGATGAAGTAGCTAAGTTTCTATGGGCAGTAGGTTTTGCACATT 1144
Query 1130 ACTTGGTTGTGTTTGTAACACTTTATCAGAGACTTCCCACCAGTGAAGCTCTGCCTAAAG 1189
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1145 ACTTGGTTGTGTTTGTAACACTTTATCAGAGACTTCCCACCAGTGAAGCTCTTCCTAAAG 1204
Query 1190 AGCTTCATCCTGTTTACTCTATGTTCATAGCTGCCCCATCAGCAGCAAGTATTGCTTGGA 1249
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1205 AGCTTCATCCTGTTTACTCTATGTTCATTGCTGCCCCATCAGCAGCAAGTATTGCTTGGA 1264
Query 1250 ACACAATATATGGCCAATTCGACGGATGTTCAAGAACTTGCTTCTTTATTGCACTCTTCC 1309
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1265 ACACGATATATGGCCAATTCGACGGATGTTCAAGAACTTGCTTCTTCATTGCACTCTTCC 1324
Query 1310 TATACATTTCCCTAGTTGCGCGGATCAATTTCTTCACTGGATTTAAGTTCTCAGTGGCGT 1369
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TATACATATCCCTAGTTGCTCGGATCAATTTCTTCACTGGATTTAAGTTCTCAGTGGCGT 1384
Query 1370 GGTGGTCATATACTTTTCCTATGACAACAGCATCAGTAGCAACAATAAAGTATGCAGAGG 1429
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1385 GGTGGTCATATACTTTTCCTATGACAACAGCATCCGTAGCAACAATAAAGTATGCAGAGG 1444
Query 1430 CAGTACCCGGTTACCCGAGCCGAGCTCTAGCCCTCACTCTTTCCTTCATTTCTACAGTGA 1489
||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||| ||
Sbjct 1445 CAGTACCTGGTTACCCGAGCCGGGCTCTAGCACTCACTCTTTCCTTCATTTCCACAGCGA 1504
Query 1490 TGGTCTGCGTTTTGTTTGTCTCCACGCTTCTCCACGCCTTTGTCTGGCAAACTTTGTTCC 1549
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1505 TGGTCTGCGTTTTGTTTGTCTCCACGCTTCTCCACGCCTTTGTCTGGCAAACGTTGTTCC 1564
Query 1550 CAAACGATCTTGCAATTGCCATTACAAAGAAGAAACTTACCAGGGAGAAGAAACCTTTCA 1609
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 1565 CAAACGATCTTGCAATTGCCATTACAAAGAGGAAACTTACCAGGGAGAAGAAGCCTTTTA 1624
Query 1610 AAAGAGCTTATGACTTGAAGCGCTGGACCAAGCAGGCTCTGGCGAAGAAAATATCTGCAG 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 AAAGAGCTTATGACTTGAAGCGCTGGACCAAGCAGGCTCTGGCGAAGAAAATATCTGCAG 1684
Query 1670 AAAAAGATTTTGAAGCCGAGGAAGAATCGCGTCACTGATGTAAAATCATGGAATACAGAA 1729
|||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1685 AAAAAGATTTTGAAGCAGAGGAAGAGTCGCATCACTGATGTAAAATCATGGAATACAGAA 1744
Query 1730 GTATCTTTGAGATGGAAATAATAGT-CAAGAAAA-CA-TT---T-TAGA--------TA- 1773
|||||||| |||| ||||||||||| || ||||| || || | |||| ||
Sbjct 1745 GTATCTTTTAGATCGAAATAATAGTTCA-GAAAAACACTTAGATATAGAGACAAAAGTAG 1803
Query 1774 -T-AGACA-CA-ATTGTATGTATCTCCGGAAGCATGTTTAATAATAATATTACATCAATA 1829
| ||| | || ||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 1804 GTGAGATAGCATATTGTATGTATCTCCAGAAGCATGTTTAATAGTAATACTACATCAATA 1863
Query 1830 CTACAG 1835
|||||
Sbjct 1864 ATACAG 1869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5