BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471399
Length=1534
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12500.1 | Symbols: | Nucleotide-sugar transporter family p... 2272 0.0
> AT1G12500.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:4263150-4265044 REVERSE LENGTH=1565
Length=1565
Score = 2272 bits (1230), Expect = 0.0
Identities = 1454/1555 (94%), Gaps = 43/1555 (3%)
Strand=Plus/Plus
Query 1 tctctctctctctctAGAAAAAGAAAGAGTGAAGAAAAACTTATTATTATTCCCATTTTA 60
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 14 TCTCTCTCTCTCTCTAGAAAAAGAAAGAAAGAAGAAAAACTTATTGTTATTCCCATTTCG 73
Query 61 CCCCTA-CCTGAAAAATGGTTGAAGCTCAATCATGGACAACACGGCGGATGAGCAATCCT 119
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 74 CCCCTATCC-GAAAAATGGTTGAAGCTCAATCATGGACAACGCGGCGGATGAGCAATCCT 132
Query 120 AGATTCGA------CGC-A--GCCGCACCAACCATTGTAGACATCCCCGGAACACCTCCA 170
|||||||| ||| | |||||||||||||| |||||||||||||||||||| |||
Sbjct 133 AGATTCGACGCCGCCGCAACCGCCGCACCAACCATCGTAGACATCCCCGGAACACCACCA 192
Query 171 CACTCCTCCGCTTCTTCACCCCTCAAACCCTTCTTCCTCTCTTTCCCTACCGTATCTCCA 230
|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||
Sbjct 193 CACTCCTCCGCTTCTTCACCACTCAAACCCTTCTTCCTCTCTTCCCCCACCGTATCACCA 252
Query 231 ACAATCCTCACGGCGGCGATAATCGCCGCCTGGTTTGGCTCAAACATAGGAGTCCTCCTC 290
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 253 ACAATCCTCACGGCGGCTATAATCGCCGCCTGGTTTGGCTCAAATATAGGAGTCCTCCTC 312
Query 291 TTAAACAAATACCTTCTCTTCTACTACGGTTTCCGTTACCCAATCTTCCTCACCATGACA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TTAAACAAATACCTTCTCTTCTACTACGGTTTCCGTTACCCAATCTTCCTCACCATGACA 372
Query 351 CACATGTTATCCTGCGCCGCTTATAGCTCCGCCGTAATCAACGTCGCCGGAATCGTGCCA 410
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 373 CACATGTTATCATGCGCCGCCTATAGCTCCGCCGTAATCAATATCGCCGGAATCGTGCCA 432
Query 411 CGTCAGCACATCTTATCTCGCCGTCAGTTTCTAAAGATCCTCTCTTTATCAGCGATCTTT 470
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 433 CGTCAGCACATCTTATCTCGCCGTCAGTTTCTAAAGATCCTCTCTTTGTCAGCGATCTTT 492
Query 471 TGTCTCTCCGTCGTCTGCGGCAACACTTCGCTACGTTATATCCCTGTTTCTTTTAATCAA 530
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TGTCTCTCCGTCGTCTGTGGCAACACTTCGCTACGTTATATCCCTGTTTCTTTTAATCAA 552
Query 531 GCTATTGGAGCCACCACGCCGTTCTTCACCGCCGTGTTCTCTTTTCTCATTACTTGTAAA 590
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 553 GCTATTGGAGCTACGACGCCGTTTTTCACCGCCGTGTTCTCTTTTCTCATTACTTGTAAA 612
Query 591 ACAGAGTCCACTGAAGTTTACTTAGCTCTTCTTCCGGTTGTCTCCGGCATCGTTCTTGCT 650
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 613 ACAGAGTCCACTGAAGTTTATTTAGCTCTTCTTCCGGTTGTCTCCGGCATCGTTCTTGCT 672
Query 651 TCTAACTCTGAACCTTCTTTTCATCTTTTTGGTTTCCTCATCTGTGTTGCTTCCACCGCC 710
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 673 TCTAACTCTGAACCTTCTTTTCATCTTTTTGGTTTCCTTATCTGTGTTGCTTCCACCGCC 732
Query 711 GGTAGAGCTCTCAAATCCGTCGTCCAGGGGATAATTTTGACGTCGGAATCGGAGAAGCTA 770
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 733 GGTAGAGCTCTCAAATCCGTCGTCCAGGGGATTATTCTGACGTCGGAATCGGAGAAGCTA 792
Query 771 CATTCTATGAATCTTTTGCTATACATGGCTCCAATGGCGGCTTGTATCTTATTACCATTT 830
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 793 CATTCTATGAATCTTTTGCTATACATGGCTCCAATGGCGGCTTGTATCTTACTACCATTT 852
Query 831 ACGTTATACATTGAAGGAAACGTATTAAGAGTTTTAATAGA-AAAGGCGAGGACGGATCC 889
||| ||||||||||||||||||| ||||||||| |||| || ||| ||||||||||||||
Sbjct 853 ACGCTATACATTGAAGGAAACGTTTTAAGAGTTCTAATCGAGAAA-GCGAGGACGGATCC 911
Query 890 ATTGATCATCTTCTTGCTGGCCGGGAATGCGACAGTGGCATATTTAGTGAATTTGACGAA 949
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 912 ATTGATCATCTTCTTGTTAGCCGGGAATGCGACAGTGGCATATTTAGTGAATTTGACGAA 971
Query 950 TTTCTTGGTGACAAAGCATACAAGTGCTCTCACATTGCAGGTTTTGGGGAACGGTAAAGC 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 972 TTTCTTGGTGACAAAGCATACAAGTGCTCTCACATTGCAGGTTTTGGGGAACGGAAAAGC 1031
Query 1010 TGCGGTGGCTGCCGGAGTTTCGGTTCTT-ATATTTAGGAATCCGGTGACGGTGATGGGAA 1068
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 1032 TGCGGTGGCTGCCGGAGTCTCGGTT-TTGATATTTAGGAATCCGGTGACGGTGATGGGAA 1090
Query 1069 TAGCCGGATTTGGTGTGACGATTATGGGTGTGGTTCTCTATAGCGAAGCTAGGAAGAGAT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TAGCCGGATTTGGTGTGACGATTATGGGTGTGGTTCTCTATAGCGAAGCTAGGAAGAGAT 1150
Query 1129 CCAAATTGCTTAACCAGAAGTGATAAGTGAGAGAAAGAAAGATTATTGGATTTAAACCGG 1188
|||||||||| |||||||||||| ||||| || | |||||||||||||||||||||||||
Sbjct 1151 CCAAATTGCTAAACCAGAAGTGAAAAGTGTGA-AGAGAAAGATTATTGGATTTAAACCGG 1209
Query 1189 TGAAGTAAttttaaatttttacttttta-tt-tttt----cggtttagtttctttattct 1242
|||||||||||| | |||||| |||||| || |||| |||||||||||||| |||||
Sbjct 1210 TGAAGTAATTTTTACTTTTTAATTTTTACTTCTTTTTTTTCGGTTTAGTTTCTTGATTCT 1269
Query 1243 ttGAAACTCTGCTATTGTTTTGAACCGGTTTGGTTCGTTT-GAGAGGGGGAAAATCAATT 1301
||| || ||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1270 TTGGAATTCTGCTATTGTTTGGAACCGGTTTGGTTCGTTTTGAGAGGGGGAAAATCAATT 1329
Query 1302 TAATTGTAAATGGTTGAGTTTGGGGAAAAACTATGAAATGaaaaaaaaaaaGTGGGAATA 1361
|||||||||||||||||| ||||||||||||||||||| ||||| |||| | |
Sbjct 1330 TAATTGTAAATGGTTGAGATTGGGGAAAAACTATGAAAAGAAAA-------GTGG-AG-A 1380
Query 1362 TATATTTATGTAACAAAAGTGAAAAAGTAGGGAGCATA-TTAAAGGAAATAAGATTGTAt 1420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 TATATTTATGTAACAAAAGTGAAAAAGTAGGGAGCATAATTAAAGGAAATAAGATTGTAT 1440
Query 1421 ctttattttattttcctttctcttaattattttttctttttctttcttgtactgttatct 1480
|||||||||||||| |||||| ||| || |||| ||||| ||| ||||| |||| |
Sbjct 1441 CTTTATTTTATTTTACTTTCTTTTAGTT-TTTT--CTTTT-CTT----GTACTATTATGT 1492
Query 1481 tttatagtttGTCTTACCAAATTTATCGAAACATAGTGTGGGAAAA-AGTTAAAA 1534
||||||||||||||||||||| |||||||||||||||| || |||| ||| ||||
Sbjct 1493 TTTATAGTTTGTCTTACCAAAATTATCGAAACATAGTGAGG-AAAATAGTCAAAA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75702421860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5