BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471402
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |... 1478 0.0
> AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1
| chr1:4267106-4268926 REVERSE LENGTH=1160
Length=1160
Score = 1478 bits (800), Expect = 0.0
Identities = 933/997 (94%), Gaps = 10/997 (1%)
Strand=Plus/Plus
Query 1 GCCGCAAAAGTTGAAGAAGCAAGAAAATGGCATCAATTCTCAGGTCAGTGGCAACGACTT 60
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GCCGCAAAAACTGAAGAAGCAAGATAATGGCATCAATTCTCAGGTCAGTGGCAACGACTT 60
Query 61 CAGCCGTCGTAGCCGCTGCGTCTGCGATTCCCATCGCAATCG----C-cttc-tcttctt 114
|||||||||||||||| || ||||||||||||||||| |||| | |||| |||||||
Sbjct 61 CAGCCGTCGTAGCCGCCGCCTCTGCGATTCCCATCGCGATCGCCTTCTCTTCTTCTTCTT 120
Query 115 cttcttcctctaccaaccccaaatctcaatatctcaatttctctttcctctcCCGATCAT 174
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 121 CTTCTTCCTCTACCAACCCCAAATCTCAATCTCTCAATTTCTCCTTCCTCTCCCGATCGT 180
Query 175 CTCCACGTCGCTTGGGACTTACACGAAGCTTCGCTAGCTCTCCGATGACGACCGTTCTCA 234
||||||||| |||||||||| |||||||||||| ||||||||||||| |||| | |||||
Sbjct 181 CTCCACGTCTCTTGGGACTTTCACGAAGCTTCGTTAGCTCTCCGATGGCGACTGCTCTCA 240
Query 235 CTTCTGATCGTAATCTCCCTCAGGAGGATCGTGTCATACCTCAGCTCCTTACTGAGTTTA 294
|||||||||||||||||| |||||||||||| | ||| |||||||| |||||||||||||
Sbjct 241 CTTCTGATCGTAATCTCCATCAGGAGGATCGAGCCATGCCTCAGCTTCTTACTGAGTTTA 300
Query 295 TGGTTGATATGAAATGTGAGGGTTGTGTTAATGCCGTGAAGAACAAATTAGAAACCATTG 354
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TGGTGGATATGACATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTG 360
Query 355 AAGGGATTGA-AAACGTGGAGGTGGATTTGTCCAACCAAGTTGTGAGGATACTTGGATCT 413
|||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 AAGGTATTGAGAAA-GTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATACTTGGATCT 419
Query 414 TCCCCTGTTAAGGCTATGACCCAAGCTTTGGAGCAAACCGGTCGAAAAGCTCGATTAATT 473
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 420 TCCCCTGTTAAGGCTATGACTCAAGCTTTGGAGCAAACTGGTCGAAAAGCTCGCTTAATT 479
Query 474 GGACAAGGTGTTCCTCAAGATTTCTTAGTCTCAGCTGCAGTAGCGGAATTCAAAGGCCCT 533
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 GGACAAGGTGTTCCTCAAGATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCT 539
Query 534 GACATATTCGGGGTGGTCAGATTTGCTCAGGTCAGTATGGAACTTGCAAGAATCGAAGCC 593
||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GACATTTTCGGGGTAGTCCGATTTGCTCAGGTCAGTATGGAACTTGCAAGAATCGAAGCC 599
Query 594 AACTTCACCGGTTTGTCACCCGGAATCCACAGCTGGTGTATTAACGAGTATGGAGATCTC 653
||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 600 AACTTTACCGGTTTGTCACCCGGAACCCACAGCTGGTGTATCAACGAGTATGGAGATCTC 659
Query 654 ACAAACGGAGCAGCCAGCACAGGGAACTTGTACAATCCATTGCAAGAT-AATACCAACAC 712
||||||||||||||||||||||||| ||||||||||||||| |||||| || || |||
Sbjct 660 ACAAACGGAGCAGCCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAA-ACTGGCAC 718
Query 713 AGAGCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTTATAC 772
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 AGAGCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTTATTC 778
Query 773 GGGAAAGAAAGAGAAACTCAAGGTTGCGGATCTTATCGGGCGAGCCGTTGTGGTGTACAA 832
||||||||||||||||||||||||||| || ||||||||| ||||||| |||||||||||
Sbjct 779 GGGAAAGAAAGAGAAACTCAAGGTTGCAGACCTTATCGGGAGAGCCGTCGTGGTGTACAA 838
Query 833 GACCGAGGATAATAAGTCAGGCCCCGGATTGACCGCTGCTGTGATAGCTAGAAGCGCAGG 892
|||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 839 GACCGATGATAATAAGTCAGGCCCCGGATTGACCGCCGCAGTGATTGCTAGAAGCGCAGG 898
Query 893 AGTTGGAGAAAACTACAAAAAGCTTTGTTCTTGTGATGGTACTGTCATATGGGAAGCAAC 952
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 899 GGTTGGAGAAAACTACAAAAAACTTTGTTCTTGTGATGGTACTGTCATATGGGAAGCTAC 958
Query 953 AAACAGCGATTTCGTGACCAGTAAGGTATAATAACAA 989
|||||||||||||||| |||||||||| |||||||||
Sbjct 959 AAACAGCGATTTCGTGGCCAGTAAGGTTTAATAACAA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48425717708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5