BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471403

Length=682
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   494    6e-139


> AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr1:4272960-4274206 FORWARD LENGTH=1000
Length=1000

 Score =  494 bits (267),  Expect = 6e-139
 Identities = 318/341 (93%), Gaps = 10/341 (3%)
 Strand=Plus/Plus

Query  9    AAGCGAAATCAGGGAAGGAGACGATGAGCCGAAGAACAAGAGAGCTAAACATAAAGAGCT  68
            ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  186  AAGCGAAATCATGAAAGGAGACGATGAGCCGAAGAACAAGAGAGCTAAACATAAAGAGCT  245

Query  69   TGAGAGACAAAGAAGGCAAGAAATCACGTCTCTATTCAAGAATT-TAAGATATTTATTGC  127
            ||||||||||||||||||||||| ||| ||||||||||||| || |||||||||||||||
Sbjct  246  TGAGAGACAAAGAAGGCAAGAAAACACATCTCTATTCAAGA-TTCTAAGATATTTATTGC  304

Query  128  CATCTCAATACACTAA-GGGTAAACGTTCTTCGGCAGATCACGTTCTAGAAGCTGTGAAC  186
            |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| 
Sbjct  305  CATCTCAATACA-TAAAGGGTAAACGTTCCTCGGCAGATCACGTTCTAGAAGCAGTGAAT  363

Query  187  TACATCAAAGACTTACAGAAGAAGATCAAAGAGGTCAGCaaaaaaaGAGATAGAATCAAG  246
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  364  TACATCAAAGACTTACAGAAGAAGATCAAAGAGGTCAGCGAAAAAAGAGATAGAATCAAG  423

Query  247  AGATCTATTACTCATCCATCTTCAACAGGAGAATGTTCAATAATATCATTAACATCATCA  306
            |||||||||||||||||||| |||| |||||||| |||||||| ||||||| ||||||||
Sbjct  424  AGATCTATTACTCATCCATCATCAAGAGGAGAATTTTCAATAAGATCATTAGCATCATCA  483

Query  307  ACTTGTTCTTGTACATGTTGGAGACAC-ACACATTGCTGTT  346
            ||||||||||||    ||||||||||| | |||||||||||
Sbjct  484  ACTTGTTCTTGT----GTTGGAGACACGA-ACATTGCTGTT  519


 Score =  132 bits (71),  Expect = 5e-30
 Identities = 79/83 (95%), Gaps = 0/83 (0%)
 Strand=Plus/Plus

Query  440  TACACACCATTGTTTCTGAGGTCGAGGAGGGAATAGAGGTTTATTACTCAGAGCTTCAAG  499
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  671  TACACACCATTGCTTCTGAGGTCGAGGAGGGAATAGAGGTTTATTTCTCAGAGCTTCAAG  730

Query  500  AAAACATAATCAAAATGGGAACC  522
            |||| ||||||||||| ||||||
Sbjct  731  AAAAGATAATCAAAATTGGAACC  753



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33003834579


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5