BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471404
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12550.1 | Symbols: | D-isomer specific 2-hydroxyacid dehyd... 1345 0.0
> AT1G12550.1 | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase
family protein | chr1:4274594-4275981 FORWARD LENGTH=1177
Length=1177
Score = 1345 bits (728), Expect = 0.0
Identities = 914/1002 (91%), Gaps = 19/1002 (2%)
Strand=Plus/Plus
Query 1 CAATGACGGAATCTTCAGATCCTCCGCTTGTTCTCCTTCACCGACCACCGTCTCTAACTT 60
||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 54 CAATGGCGGAATCTTCAGAGCCTCCGGTTGTTCTCCTTCACCGACCACCGTCTCTAACTT 113
Query 61 TCATGGACGAGACTATAAGTCGTGAATTCCGGACTCTCATCACCGACAC-T--TCATCGG 117
|||||||||||| | | | |||||||||||| ||||||||||||||||| | |||||||
Sbjct 114 TCATGGACGAGATTCTGACTCGTGAATTCCGTACTCTCATCACCGACACTTCCTCATCGG 173
Query 118 AATCACTCCCGAGTTTCCTCTCCCGTCACGCCTCCTCAGCCAGAGCCTTCG-TAGTCATC 176
||||||||||||| ||| || |||||||||||||||| ||||||||||||| || ||| |
Sbjct 174 AATCACTCCCGAGCTTCTTCCCCCGTCACGCCTCCTCCGCCAGAGCCTTCGTTA-TCAGC 232
Query 177 GGTAGACTTCCGGTAACCGAAGAACTCCTTTCTCATCTCCCTTCTCTCCAGATACTCGTC 236
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 233 GGCAGACTTCCGGTAACCGATGAACTCCTTTCTCATCTCCCTTCTCTCCAGATTCTCGTC 292
Query 237 TGCACTAGCGTCGGCATCGATCACATCGATCTCGCCGCATGCAAGCGTCGCGATC-TCGT 295
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 293 TGCACTAGCGTCGGCATCGATCACATCGATCTCGCCGCATGCAAGCGTCGCG-GCATCGT 351
Query 296 TATCACGAACGCTGGCAACGCGTTTTCCGATGACGTTGCGGATTGTGCCGTCGGTTTGCT 355
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 352 TATCACCAACGCTGGCAACGCGTTTTCCGATGACGTTGCTGATTGTGCCGTCGGTTTGCT 411
Query 356 T-TTAAATGTCCTCCGTCGTATTCCTGCCGCCGATCGTTACGTCCGGTCTGGTAATTGGG 414
| || | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TATT-AGCGTTCTCCGTCGTATTCCTGCCGCCGATCGTTACGTCCGGTCTGGTAATTGGG 470
Query 415 CGAAATTTGGGGATTTTCAATTAGGGTCCAAGGTTTGTTCGAAGAAAGTCTTTG-TGGTT 473
|||||||||||||||||||||||||||||||||| || ||||| ||| | | | |||
Sbjct 471 CGAAATTTGGGGATTTTCAATTAGGGTCCAAGGTAAGTGGGAAGAGAGT-TGGGATAGTT 529
Query 474 GTTACAGGTAAG-ATTGGATCCTTTGTTGCCAAAAGACTTGAATCCTTTGGTTGTATCAT 532
| | || || |||||||| |||||||| |||||||||||||| ||||| ||| | ||
Sbjct 530 G-GATTGGGGAGCATTGGATCATTTGTTGCTAAAAGACTTGAATCATTTGGCTGTGTTAT 588
Query 533 CTCTTACAACTCAAGAAGTCAGAAACAGAGCAGTCCATACCGGTATTACCCCGATATTCT 592
||||||||||||||| |||||||||||||| |||||||||||||||||| | || |||||
Sbjct 589 CTCTTACAACTCAAGGAGTCAGAAACAGAGTAGTCCATACCGGTATTACTCTGACATTCT 648
Query 593 CTCTTTAGCAGCTG-ACAACGATGTCCTCGTCCTCTGCTGCTCTTTGACAGACGAAACGC 651
||| ||||||| | |||||||||| || |||||||||||||||||||||||||||||||
Sbjct 649 CTCGTTAGCAG-AGAACAACGATGTACTTGTCCTCTGCTGCTCTTTGACAGACGAAACGC 707
Query 652 ACCACATTGTGAATAGAGAAGTGATGGAGTCGCTTGGTGAGGATGGGGTTATAG-TCAAT 710
|||| ||||||||||||||||||||||||| ||||||| ||||||||||| | | |||||
Sbjct 708 ACCATATTGTGAATAGAGAAGTGATGGAGTTGCTTGGTAAGGATGGGGTTGT-GATCAAT 766
Query 711 GTGGGACGAGG-AGGTTTGATTGATGAGAAGGAGATGGTGAAGTGTTTGGTTGAAGGTGT 769
||||||||||| | | ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 767 GTGGGACGAGGAAAG-TTGATTGATGAGAAGGAGATGGTCAAGTGTTTGGTTGACGGTGT 825
Query 770 GATTGGTGGTGCCGGTTTAGATGTGTTTGAGAACGAACCGGCAGTTCCTGAGGAGTTGTT 829
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 826 GATTGGTGGTGCTGGTTTAGATGTGTTTGAGAATGAACCGGCAGTTCCTCAGGAGTTGTT 885
Query 830 TGGTTTGGACAATGTTGTGTTGTCTCCACATTTAGCTGTGGCTACCCCAGGGTCTTTGGA 889
||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 886 TGGTTTGGATAATGTAGTGTTGTCTCCTCATTTTGCTGTGGCTACACCAGGGTCTTTGGA 945
Query 890 CAATGTTGCAGAGATCGCTTTAGCTAACTTGAAGGCGTTTTTCTCGAACCGGCCTTTGCT 949
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CAATGTTGCACAGATTGCTTTAGCTAACTTGAAGGCGTTTTTCTCGAACCGGCCTTTGCT 1005
Query 950 TTCTCCGGTTCAATTGGATTGAGAGAGCGTACGGTTTGATCA 991
||||||||||||||||||||||||||||| |||||||||||
Sbjct 1006 TTCTCCGGTTCAATTGGATTGAGAGAGCGCCCGGTTTGATCA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5