BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471407
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12580.1 | Symbols: PEPKR1 | phosphoenolpyruvate carboxylase... 2833 0.0
> AT1G12580.1 | Symbols: PEPKR1 | phosphoenolpyruvate carboxylase-related
kinase 1 | chr1:4282899-4285829 FORWARD LENGTH=1972
Length=1972
Score = 2833 bits (1534), Expect = 0.0
Identities = 1834/1973 (93%), Gaps = 44/1973 (2%)
Strand=Plus/Plus
Query 1 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTGTTTTGCTCTTCGACGGG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 4 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTG-TTTGCTCTTCGACGGG 62
Query 61 ATTCTCACTACTCTTTTGCaaaaaaaaaaaGATCGGAGGTTCCGAAGGTGAATGCAGCTT 120
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 63 ATTCTCACTACTCTTTTGCCAAAAAAAAGAGATCGGAGGTTCCGAAGGTGAATGCAGCTT 122
Query 121 GCGATTTCATCGAAGAGAAGATTCACCTGCCGGATTAGGCTTAATTGGGTATTATAACTG 180
|||||||||| ||| ||||||||| ||| |||||||||||| ||| |||| ||| ||
Sbjct 123 GCGATTTCATAGAAAAGAAGATTCGTTTGCTGGATTAGGCTTATTTGTGTATCATAGCTT 182
Query 181 TAAGATTGTACCTGAGA--T-TT-AT--T-G--C-TAGG---T-GA-A--CGT------T 217
| || || || |||||| | || || | | | |||| | || | || |
Sbjct 183 TGAGGTTTTAACTGAGATTTATTGATAGTGGAACTTAGGTTTTCGAGAGGTGTGAACAGT 242
Query 218 TGGGTATATGGGTATGGACATAGCTGATAAAGAGAATACGAGCCCGCTTTTATTTGAATT 277
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 243 TGGGTATATGGGTATGGACATAGCTGATAAGGAGAATACGAGCCCGCTTTTATTTGAATT 302
Query 278 CTGCAATTGTTATAAAGTTGCTAGCCTTACTGAAACCATTCTAAACCCGGTAAATGTTTC 337
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 303 CTGCAATTGCTATAAAGTTGCAAGCCTTACTGAAACCATTCTAAACCCTGTAAATGTTTC 362
Query 338 CAACTTAAAAGATCGATATGTGCTTGGAGAACAGTTAGGTTGGGGTCAGTTTGGTGTGAT 397
||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 363 CAACTTAAAAGATAGATATGTACTTGGAGAACAGTTAGGCTGGGGTCAGTTTGGTGTGAT 422
Query 398 AAGAGTATGTTCTGATAAGTTAACAGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 457
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 423 AAGAGTATGTTCTGATAAGTTAACTGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 482
Query 458 CAGATTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATTATGGCCAA 517
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 483 CAGACTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATAATGGCCAA 542
Query 518 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTATGAGGAGAAAGATTATGT 577
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 543 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTACGAGGAGAAAGATTCTGT 602
Query 578 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTTGAGAAATATGG 637
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 603 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTCGAGAAATATGG 662
Query 638 AAGGTATTCAGAGTTTCGTGCTAGGGTACTCTTCAAGCATTTGATGCAAGTGGTCAAGTT 697
||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 663 AAGGTATTCTGAGGTTCGTGCTAGGGTGCTCTTCAAGCACTTGATGCAAGTGGTCAAGTT 722
Query 698 TTGTCACGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 757
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TTGTCATGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 782
Query 758 AATGTCTTCTTCATCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 817
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AATGTCTTCTTCGTCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 842
Query 818 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCTGAAGTGTTATC 877
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 843 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCGGAAGTGTTAGC 902
Query 878 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTACATTCTTCT 937
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 903 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTATATTCTTCT 962
Query 938 CAGTGGAGTGCCTCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 997
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAGTGGAGCGCCGCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 1022
Query 998 TGCAGATTTGAGATTTTCTGCAGAGCCATGGGACCATATAACTTCATATGCTAAGGATTT 1057
||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 1023 TGCCGATTTGAGATTTTCTGCAGAGCCATGGGACAATATAACTTCATACGCCAAGGATTT 1082
Query 1058 GATCCGCGGGATGCTTTGTGTTGATCCTTCCCAAAGATTATCAGCTGATGAAGTTCTGGC 1117
||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||
Sbjct 1083 GATTCGCGGGATGCTTTGTGTGGATCCTTCCCAAAGGTTATCAGCTGACGAAGTTCTAGC 1142
Query 1118 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1202
Query 1178 TGGTTGTGAAGGATTGGATAATGGGGGTTGTTCTTTTTCCACCCAATGCATTTCTCGCGA 1237
|||||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| ||
Sbjct 1203 TGGTTGTGAAGGATTGGAGAATGGGGGATGTTCTTTCTCCACACAATGCGTTTCTCGGGA 1262
Query 1238 ACAAGACTATAGCTTTAGTGTTGGTCAGTTAGAGCAATCAACAGATAACGAGTGTAAATC 1297
|||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||
Sbjct 1263 ACAAGACTATAGCTTTAGCGTTGGCCAGTTAGAGCAATCAACAGATAACGATTTTAAATC 1322
Query 1298 ATCGTTCTCGTCTTTCCTACCTGTGGATGATACACTGCCAAATTCCGGTTTTGGTGGGTT 1357
|||||||||| | |||||||||| |||| | |||||||||||||||||||||| ||||||
Sbjct 1323 ATCGTTCTCGACATTCCTACCTGCGGATAACACACTGCCAAATTCCGGTTTTGATGGGTT 1382
Query 1358 TTCTTTTGATGGAAAACAACCGGAATCAACCTCAGCTTGCTTCACATCAACTGGAATTCC 1417
|||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 1383 TTCTTTTGATGGGAAACAACCGGAATCAACCACAGCTGGCTTCTCATCAACTGGAATTCC 1442
Query 1418 CTCTATGCCAAGCTTTACCTTTTTTAGTCCAATCCCAGCGACGACACAGAACAACAACAT 1477
||||||||||||||||||||||||| || ||| |||||| | ||||||||||||| ||||
Sbjct 1443 CTCTATGCCAAGCTTTACCTTTTTTTGTACAAGCCCAGCAAGGACACAGAACAACGACAT 1502
Query 1478 AAGC-GAAACAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1536
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 AA-CTGAAATAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1561
Query 1537 ATTCTTCTTCACAACTTGAGAGACGCGAGGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1596
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1562 ATTCTTCTTCACAACTTGAGAGGCGTGATGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1621
Query 1597 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTCCACAGCA 1656
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1622 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTACACAGCA 1681
Query 1657 AAAGAAACCGGACCATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1716
|||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 AAAGGAACAGAACAATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1741
Query 1717 CAGCGTCGATAATCAGATGGGCATCTTGCACCCATATTCCCACGGCTCCATCCCTCAGAT 1776
||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1742 CAGAGTCGATAATCAGATGGGCATCTTGCACGCATATTCCCACCGCTCCATCTCTCAGAT 1801
Query 1777 TGTCGCTCGTCTGCTAGAA-A-GA---C-AA-----C---TGTTATCAGTATAATATA-T 1821
||||||||||||||||||| | || | || | ||||||||||| ||||| |
Sbjct 1802 TGTCGCTCGTCTGCTAGAAGAAGAAAACGAAGAAGACAACTGTTATCAGTAAAATATTGT 1861
Query 1822 -TGTACACATCTGATTTTGTTCGTGCAATGTCTTTGTTTTTGTAGTAAAACATTTCCATG 1880
||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 1862 ATGTACACATCTGATTTTGTCCCTGCAATGTCTTTGTTTTTGTAGTAAAACTTTTCCATG 1921
Query 1881 GAAACTGACCTCAACCTGTATAAACCAAGCGGAAATAGAGTGTGATTTTGATC 1933
||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1922 GAAACTGACCTCAAC-TGTATAAACCAA-CGGAAATAGAGTGTGATTTTGATC 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95732439315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5