BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471409
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12610.1 | Symbols: DDF1 | Integrase-type DNA-binding superf... 1024 0.0
> AT1G12610.1 | Symbols: DDF1 | Integrase-type DNA-binding superfamily
protein | chr1:4289944-4291017 REVERSE LENGTH=1074
Length=1074
Score = 1024 bits (554), Expect = 0.0
Identities = 664/717 (93%), Gaps = 8/717 (1%)
Strand=Plus/Plus
Query 97 ttttccggcg-attttttGCACTTCTGAGTTATGAACAATGATGAGCTTATTTTGGCGGA 155
|||||||||| |||||| | |||| ||||||||||| |||||||| ||||| |||||||
Sbjct 154 TTTTCCGGCGAATTTTTGGTACTT-TGAGTTATGAATAATGATGATATTATTCTGGCGGA 212
Query 156 GATGAGACCAAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTA 215
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GATGAGGCCTAAGAAGCGTGCGGGAAGGAGAGTGTTTAAGGAGACACGTCACCCAGTTTA 272
Query 216 CAGAGGAATAAGGCGGAGGAACGGCGACAAATGGGTCTGCGAAGTCAGAGAGCCGACGCA 275
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 273 CAGAGGCATAAGGCGGAGGAACGGTGACAAATGGGTCTGCGAAGTCAGAGAACCGACGCA 332
Query 276 CCAACGCCGCATTTGGCTCGGGACTTATCCCACCGCGGATATGGCGGCGCGTGCTCACGA 335
||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||
Sbjct 333 CCAACGCCGCATTTGGCTCGGGACTTATCCCACAGCAGATATGGCAGCGCGTGCACACGA 392
Query 336 CGTGGCGGTTTTAGCTCTGCGCGGGAGATCTGCGTGTTTGAATTTCGCAGACTCCGCTTG 395
||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 393 CGTGGCGGTTTTAGCTCTGCGTGGGAGATCCGCATGTTTGAATTTCGCCGACTCCGCTTG 452
Query 396 GCGGCTCCCGGTGCCGGAATCCAATGATCCGGATGTGATAAGAAGAGTTGCGGCGGAAGC 455
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GCGGCTTCCGGTGCCGGAATCCAATGATCCGGATGTGATAAGAAGAGTTGCGGCGGAAGC 512
Query 456 AGCGGAGATGTTTAGGCCGGTAGATTTAGGAAGTGGAATTACGGTTTTGCCCTCTTTGGG 515
|||||||||||||||||||| ||||||| ||||||||||||||||||||| | | |||
Sbjct 513 TGCGGAGATGTTTAGGCCGGTGGATTTAGAAAGTGGAATTACGGTTTTGCCTTGTGCGGG 572
Query 516 AGATGATGTGGATTTGGGTTTTGGTTCGGGTTCTGGCTCTGGTTCGGGATCAGAGGAGAG 575
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 573 AGATGATGTGGATTTGGGTTTTGGTTCGGGTTCCGGCTCTGGTTCGGGATCGGAGGAGAG 632
Query 576 GAATTCTTCTTCGTATGCATTTGGAGACTACGAAGAAGTGTCCACGACGATGATGAGACT 635
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 633 GAATTCTTCTTCGTATGGATTTGGAGACTACGAAGAAGTCTCAACGACGATGATGAGACT 692
Query 636 CGCGGAGGAGCCATTAATGTCGCCTCCGCGATCGTATACGGAAGACATGACTCCTAGTAA 695
|||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 693 CGCGGAGGGGCCACTAATGTCGCCGCCGCGATCGTATATGGAAGACATGACTCCTACTAA 752
Query 696 TGTTTACACGGAAGAAGAGATGTGTTATGAAGATATATCACTGTGGAGTTACAGTTATTA 755
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 753 TGTTTACACGGAAGAAGAGATGTGTTATGAAGATATGTCATTGTGGAGTTACAGATATTA 812
Query 756 AGTGGGACTCACTCACATATCTACtatatatattatataGTTTTTA-GTTAGAAGGT 811
|||||||||||| | ||||||||||| ||| ||| ||| ||||| || ||| |||
Sbjct 813 AGTGGGACTCAC--A--TATCTACTATACATAATATTTAGCTTTTATGTAAGA-GGT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5