BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471412
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12650.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1580 0.0
> AT1G12650.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292);
Has 700 Blast hits to 631 proteins in 192 species: Archae
- 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants
- 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
| chr1:4306059-4308005 FORWARD LENGTH=1203
Length=1203
Score = 1580 bits (855), Expect = 0.0
Identities = 981/1039 (94%), Gaps = 19/1039 (2%)
Strand=Plus/Plus
Query 56 TGTGCTCTTTATTGATTAGGTTCACGTGTCGACATGAAGGGAGCTGGTAAGTTTGAAGGG 115
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 92 TGTGATCTTTATTGATTAGGTTCACGTGTCGACATGAAAGGAGCTGGTAAGTTTGAAGGG 151
Query 116 AGCTCGAGTAAGATAGTTTTTGAGGATAGTGAAGAAGATGAAGATCTGTCGTATTCATCT 175
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 152 AGCTCAAGTAAGATAGTTTTTGAGGATAGTGAAGAAGATGAAGATCTCTCGTGTTCATCT 211
Query 176 GTGTCTTCTTCAGATGAGGAAGAAGAAACAGAAAAAGAGTTAACCTTTGAGGAGATACAT 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 212 GTGTCTTCTTCAGATGAGGAAGAAGAAACAGAAAAAGAGTTAACCTTTGAGGAGATTCAT 271
Query 236 AAATTACGAGCTGATGGGTCTAAAGCTGTTCCATGGAAACCAAATCAAGTGAAGAAGACA 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 272 AAATTACGAGCTGATGGGTCTAAAGCTGTTCCATGGAAACCAAATCAAGTGAAGAAAACA 331
Query 296 ----G-G-TCGTGCTAACAAAAACAGACCAATGG-AGTTGAGTTCTAAGAAACCTGTGAG 348
| | |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 332 GGTCGTGCTCGTGCTAACAAAAACAGACCAATGGAAG-TGAGTTCTAAGAAACCTGTGAG 390
Query 349 TCGTTATAGAGAGGTAGTTCAAGTTCCAAAGAAGGAGGTTCGTGATCCTCGCTTCAATCA 408
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 391 TCGTTATAGAGAGGTGGTTCACGTTCCAAAGAAGGAGGTTCGTGATCCTCGCTTTAACCA 450
Query 409 ATTGGGTGGAACACTTGACGTCGAGGGGTTCAGGAAGCGATACAATTTCTTTTTTGAAGA 468
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 451 ATTGGGTGGAACACTTGACGTCGAGGGGTTCAGGAAGCGATATAATTTCTTTTTTGAGGA 510
Query 469 CAAACTTCCTGTGGAAAGAGAGGAATTGAAAAAGAAGCTAAAGAAAACAAAGAATCCAGA 528
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 511 CAAACTTCCTGTGGAAAGAGAGGAATTGAAAAAGAAGTTAAAGAAAACAAAGAATCCAGA 570
Query 529 AGAGGTCAACGAATTGAAGAACCAGTTAACTTACGTTGAGAAAATGTTGAAATATGAGCC 588
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 571 AGAAATCGACGAATTGAAGAACCAGTTAACTTACGTTGAGAAAATGTTGAAGTATGAGCC 630
Query 589 ATCAACAAAGAACAAAGGAGCAGCAATACTAACAGAACACAAAAAGAAAGAACGAGAAGC 648
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 ATCAACACAGAACAAAGGAGCAGCAATACTAACAGAACACAAAAAGAAAGAACGAGAAGC 690
Query 649 CGCAAAAGAAGGGAAAAGGCCTTACTATCTaaaaaaaTCGGAAATCCGAAAGCAAACACT 708
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 691 CGCAAAAGAAGGAAAAAGGCCTTACTATCTCAAAAAATCGGAAATCCGAAAGCAAACACT 750
Query 709 CATCGAAAAGTACAACAGTCTCAAGGAATCTGGGAAGCTTACATCGTATCTTGACAAACG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 CATCGAAAAGTACAACAGTCTCAAGGAATCTGGGAAGCTTACATCGTATCTTGACAAACG 810
Query 769 GAGGAAGAAGAATGCGACAAAGGATCATAGGTTTATGCCCTATCGTCGAGCAGAGGAATA 828
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 811 GAGGAAGAAGAATGCAACAAAGGATCATAGGTTCATGCCCTATCGTCGAGCAGAGGAATA 870
Query 829 GTGAGAAGCAGTTTTGCTTTAAGAAC-GAACTCTTACCTTGGTCCATGACAGTTTTTGTG 887
| || ||||||||||||||||||| | | ||||||||||||||||||||| |||||||
Sbjct 871 GAGATAAGCAGTTTTGCTTTAAGACCTGT-CTCTTACCTTGGTCCATGACAAATTTTGTG 929
Query 888 GCAGTCTTTGTGATG-T-AGTACTAAAATTTATGCTTGAGAATTGAAAGCCAAATGCAGC 945
|| ||||||||||| | | | |||||||| ||| ||||| ||||||||||||||||||
Sbjct 930 GCGGTCTTTGTGATACTGA-T-CTAAAATTCATGTTTGAGGTTTGAAAGCCAAATGCAGC 987
Query 946 TAAACtttttttgttttt-CAATTGAAAGCCAAATCGAATACAAAGGCTGCTTAGTTTGC 1004
| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TTTACATTTT--GTTTTTGCAATTGAAAGCCAAATCGAATACAAAGGCTGCTTAGTTTGC 1045
Query 1005 TGTTGTTTCTGTGAAGACATGAGAGACTCTAGACCTTTCAGAGGGTTCAAATCTAC-TGT 1063
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1046 TGTTGGTTCTGTGAAGACATGAGAGACTCTAGACCTTTCAGAGGGTTCAAATCTACAT-T 1104
Query 1064 ACTTTTCTTATGTTACTTA 1082
|||||||||||||||||||
Sbjct 1105 ACTTTTCTTATGTTACTTA 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5