BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471418 Length=502 Score E Sequences producing significant alignments: (Bits) Value AT1G12672.2 | Symbols: | unknown protein; LOCATED IN: endomemb... 300 1e-80 AT1G12670.1 | Symbols: | Encodes a Plant thionin family protei... 296 1e-79 > AT1G12672.2 | Symbols: | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). | chr1:4318309-4319090 FORWARD LENGTH=600 Length=600 Score = 300 bits (162), Expect = 1e-80 Identities = 187/198 (94%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 308 TGTATCAAGACTTGTCTTGAACCT-C--CTTCACAGATGGATTTAACAAACGAAATCAAT 364 |||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct 187 TGTATCAAGACTTGTCTTGAACCTCCTTCTTCACAGATGGATTCCACAAACGAAATCAAT 246 Query 365 CATAATGAGTATTACTGCAAACTAGGTTGTTCTACTCATCACTGTGCTTCCCTTTCCTCT 424 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 247 CATAATGATTATTACTGCAAACTAGGTTGTTCTACTCATCACTGCGCTTCCCTTTCCTCT 306 Query 425 ATCCAAAATCCGACAGATGTGGACAAAGTTGTGGACTGTGTGGATTCATGCTCGGACAAG 484 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 ATCCAAAATCCG--A-ATGTGGACAAAGTTGTGGACTGTGTGGATTCATGCTCGGACAAG 363 Query 485 TGCTCCAACAAGAACTAG 502 ||||| |||||||||||| Sbjct 364 TGCTCGAACAAGAACTAG 381 Score = 174 bits (94), Expect = 6e-43 Identities = 108/115 (94%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1 ATGGAGAGCAAAAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 ATGGAGAGCAACAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 126 Query 61 CTTCTGATTCAGACAGAAGCTCAAGCTCAAGCTCAACCTTCTCCTTTTAAAACTT 115 ||||||||| | ||||||||| | |||| | |||||||||||||||||||||||| Sbjct 127 CTTCTGATTGAAACAGAAGCTGATGCTCCACCTCAACCTTCTCCTTTTAAAACTT 181 > AT1G12670.1 | Symbols: | Encodes a Plant thionin family protein [pseudogene] | chr1:4316701-4317005 FORWARD LENGTH=305 Length=305 Score = 296 bits (160), Expect = 1e-79 Identities = 234/267 (88%), Gaps = 15/267 (6%) Strand=Plus/Plus Query 1 ATGGAGAGCAAAAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGAGCAACAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 60 Query 61 CTTCTGATTCAGACAGAAGCTCAAGCTC-A----A-GCTCAACCTTCTCCTTT-TAAAAC 113 ||||||||||||||||||||| | |||| | | |||||| ||||| ||| | || | Sbjct 61 CTTCTGATTCAGACAGAAGCTGATGCTCCACCTCAAGCTCAATCTTCTGGTTTCTTAA-C 119 Query 114 TTGTTACCCAGGTTGTGTTTTGACTTGTTTC-TATCAGCACAAATTTCCAAAATTTTTGT 172 ||||||||||||||||||| || |||||||| | | || | ||||||||| ||||||||| Sbjct 120 TTGTTACCCAGGTTGTGTTGTGTCTTGTTTCGT-TGAGAAGAAATTTCCACAATTTTTGT 178 Query 173 TGTGTCCATTTACGTGTCTCGGGACTTGTCTTTTTCCTCA-TCCTTCTCAGATGGTTTCA 231 ||||||||||||||||| |||||||||||||| ||| | | |||| |||||||||||| Sbjct 179 TGTGTCCATTTACGTGTATCGGGACTTGTCTT---CCT-AGTTCTTCACAGATGGTTTCA 234 Query 232 ACAAACGAAATCAATCATACTCCATAA 258 |||||| |||||||| ||||||||||| Sbjct 235 ACAAACAAAATCAATAATACTCCATAA 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23961688119 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5