BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471418
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12672.2 | Symbols: | unknown protein; LOCATED IN: endomemb... 300 1e-80
AT1G12670.1 | Symbols: | Encodes a Plant thionin family protei... 296 1e-79
> AT1G12672.2 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G12663.1). | chr1:4318309-4319090 FORWARD
LENGTH=600
Length=600
Score = 300 bits (162), Expect = 1e-80
Identities = 187/198 (94%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 308 TGTATCAAGACTTGTCTTGAACCT-C--CTTCACAGATGGATTTAACAAACGAAATCAAT 364
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 187 TGTATCAAGACTTGTCTTGAACCTCCTTCTTCACAGATGGATTCCACAAACGAAATCAAT 246
Query 365 CATAATGAGTATTACTGCAAACTAGGTTGTTCTACTCATCACTGTGCTTCCCTTTCCTCT 424
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 247 CATAATGATTATTACTGCAAACTAGGTTGTTCTACTCATCACTGCGCTTCCCTTTCCTCT 306
Query 425 ATCCAAAATCCGACAGATGTGGACAAAGTTGTGGACTGTGTGGATTCATGCTCGGACAAG 484
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATCCAAAATCCG--A-ATGTGGACAAAGTTGTGGACTGTGTGGATTCATGCTCGGACAAG 363
Query 485 TGCTCCAACAAGAACTAG 502
||||| ||||||||||||
Sbjct 364 TGCTCGAACAAGAACTAG 381
Score = 174 bits (94), Expect = 6e-43
Identities = 108/115 (94%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGCAAAAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ATGGAGAGCAACAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 126
Query 61 CTTCTGATTCAGACAGAAGCTCAAGCTCAAGCTCAACCTTCTCCTTTTAAAACTT 115
||||||||| | ||||||||| | |||| | ||||||||||||||||||||||||
Sbjct 127 CTTCTGATTGAAACAGAAGCTGATGCTCCACCTCAACCTTCTCCTTTTAAAACTT 181
> AT1G12670.1 | Symbols: | Encodes a Plant thionin family protein
[pseudogene] | chr1:4316701-4317005 FORWARD LENGTH=305
Length=305
Score = 296 bits (160), Expect = 1e-79
Identities = 234/267 (88%), Gaps = 15/267 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAGCAAAAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGCAACAGAATGGTGATGTTTGTGACAATGATGATAGTGATGGTAATGGGAAAC 60
Query 61 CTTCTGATTCAGACAGAAGCTCAAGCTC-A----A-GCTCAACCTTCTCCTTT-TAAAAC 113
||||||||||||||||||||| | |||| | | |||||| ||||| ||| | || |
Sbjct 61 CTTCTGATTCAGACAGAAGCTGATGCTCCACCTCAAGCTCAATCTTCTGGTTTCTTAA-C 119
Query 114 TTGTTACCCAGGTTGTGTTTTGACTTGTTTC-TATCAGCACAAATTTCCAAAATTTTTGT 172
||||||||||||||||||| || |||||||| | | || | ||||||||| |||||||||
Sbjct 120 TTGTTACCCAGGTTGTGTTGTGTCTTGTTTCGT-TGAGAAGAAATTTCCACAATTTTTGT 178
Query 173 TGTGTCCATTTACGTGTCTCGGGACTTGTCTTTTTCCTCA-TCCTTCTCAGATGGTTTCA 231
||||||||||||||||| |||||||||||||| ||| | | |||| ||||||||||||
Sbjct 179 TGTGTCCATTTACGTGTATCGGGACTTGTCTT---CCT-AGTTCTTCACAGATGGTTTCA 234
Query 232 ACAAACGAAATCAATCATACTCCATAA 258
|||||| |||||||| |||||||||||
Sbjct 235 ACAAACAAAATCAATAATACTCCATAA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23961688119
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5