BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471420
Length=2002
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12700.1 | Symbols: | ATP binding;nucleic acid binding;heli... 2567 0.0
AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 318 1e-85
> AT1G12700.1 | Symbols: | ATP binding;nucleic acid binding;helicases
| chr1:4323556-4326333 REVERSE LENGTH=2480
Length=2480
Score = 2567 bits (1390), Expect = 0.0
Identities = 1555/1635 (95%), Gaps = 10/1635 (1%)
Strand=Plus/Plus
Query 74 GTATTAGCGATGGGAGA-GTCTGTTTCAGAGAGAGATTGAGAAGTGGGATTGTTGATATT 132
|||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 249 GTATTAGCAATGGGA-ATGTCTGTTTCAGAGAGAGATTGAGAAGTGGTATTGTTGATATT 307
Query 133 AAGGAAGATGATGCTATTGATCTGTTTCAAGAAATGATTAAGTCTCGTCCTCTTCCTAGT 192
||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 308 AAGAAAGATGATGCTATTGCTCTGTTCCAAGAAATGATTAGGTCTCGTCCTCTTCCTAGT 367
Query 193 CTTGTTGATTTCAGTAAATTGTTTAGTGGTGTTGCAAGCACAAAACAGTTCAATCTCGTT 252
|||||||||||||||| ||| ||||||| |||| || ||||||||||||||||||||
Sbjct 368 CTTGTTGATTTCAGTAGATTCTTTAGTGCCATTGCCAGAACAAAACAGTTCAATCTCGTG 427
Query 253 TTAGATTTCTGCAAG-AAGATGGAATTGAATGGGATTGCTCATAATATCTACACTTTGAA 311
||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 428 TTAGATTTCTGCAAGCAA-CTGGAATTGAATGGGATTGCTCATAACATCTACACTTTGAA 486
Query 312 TATCATGATCAATTGCTTTTGCCGGTGTTGTAAAACTTGTTTTGGTTATTCTGTTTTGGG 371
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 487 TATCATGATCAACTGCTTTTGCCGGTGTTGTAAAACTTGTTTTGCTTATTCTGTTTTGGG 546
Query 372 AAAAGTTATGAAGCTTGGGTATGAGCCTGACACAACAACGTTTAACACTCTGATCAATGG 431
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 547 AAAAGTAATGAAGCTTGGGTATGAGCCTGACACAACCACGTTTAACACTCTGATCAAAGG 606
Query 432 ACTCTGTCTCGAGAGTAAAGTTTCTGAAGCTGTGGTTTTAGTCGCTAGGATGGTGGAAAA 491
||||| ||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 607 ACTCTTTCTTGAGGGTAAAGTGTCTGAAGCTGTGGTTTTAGTCGATAGGATGGTGGAAAA 666
Query 492 CGGATGTCAACCCGATGTGGTTACTTATAATTCGATTGTGAATGGGATATGTAAATCAGG 551
|||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 667 CGGATGTCAACCTGATGTGGTTACTTATAATTCGATTGTAAATGGGATATGTAGATCAGG 726
Query 552 AGATACTTCTTTAGCCTTGGATTTGCTCAGAAAGATGGATGAAAGAAATGTTAAGGCTGA 611
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 727 AGATACTTCTTTGGCCTTGGATTTGCTCAGAAAGATGGAAGAAAGAAATGTTAAGGCTGA 786
Query 612 TGTGTTTACTTACAGTACAATCATTGATAGTCTTTGTAGAGATGGTTGCATAGACGTTGC 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 787 TGTGTTTACTTACAGTACAATCATTGATAGTCTTTGTAGAGATGGTTGCATAGACGCTGC 846
Query 672 AATTAGCCTTTTCAAGGAAATGGAAACGAAAGGTATCAAATCTAGTGTTGTTACGTATAA 731
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 847 AATTAGCCTTTTCAAGGAAATGGAGACGAAAGGGATTAAATCTAGTGTTGTTACGTATAA 906
Query 732 TTCTCTTGTGGGAGGTCTTTGTAAAGCCGGTAAATGGAATGATGGTGTGCA--GTTGTTG 789
|||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 907 TTCTCTTGTGAGAGGTCTTTGTAAAGCCGGTAAATGGAATGATGG-G-GCACTGTTGTTG 964
Query 790 AAGGATATGACGAGTAGGAAAATCATCCCTAATGTCATCACTTTCAATGTATTGA-TTGA 848
||||||||| ||||||| ||||| |||||||||||||||||||||||||||| | ||||
Sbjct 965 AAGGATATGGTGAGTAGGGAAATCGTCCCTAATGTCATCACTTTCAATGTATT-ACTTGA 1023
Query 849 TGTTTTTGTTAAAGAAGGGAAGCTTCAGGAGGCTAACGAATTGTACAAAGAGATGATCAC 908
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1024 TGTTTTTGTCAAAGAAGGGAAGCTTCAGGAGGCTAATGAATTGTACAAAGAGATGATCAC 1083
Query 909 AAGAGGTATATCACCTAACACTATTACTTATAATTCCTTGATGGATGGGTATTGTATGCA 968
|||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 1084 AAGAGGTATATCACCTAATATTATTACTTATAATACCTTGATGGATGGGTATTGTATGCA 1143
Query 969 GAACCGTCTTAGCGAGGCCAACAATATGTTGGATCTTATGGTTAGGAATAATTGCAGTCC 1028
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1144 GAACCGTCTTAGTGAGGCCAACAATATGTTGGATCTTATGGTTAGGAATAAGTGCAGTCC 1203
Query 1029 TGATATCGTGACTTTTACAAGTCTCATTAAAGGATATTGTAAGGTGAAAAGGGTTGACGA 1088
||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 1204 TGATATCGTGACTTTTACAAGTCTCATCAAAGGATATTGTATGGTGAAAAGAGTTGACGA 1263
Query 1089 AGGTATGAAACTCTTCCGCAAGATTTCTAAGAGAGGCTTGGTTGCCAATACAGTTACCTA 1148
|||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 1264 TGGTATGAAGGTCTTCCGCAATATTTCTAAGAGAGGCTTGGTTGCCAATGCAGTTACTTA 1323
Query 1149 TAGCATTCTTGTCCAAGGGTTTTGTCAATCCGGGAAACTAGAGATCGCGGAGGAACTTTT 1208
||||||||||||||||||||||||||||||||||||| || || |||| |||||||||||
Sbjct 1324 TAGCATTCTTGTCCAAGGGTTTTGTCAATCCGGGAAAATAAAGCTCGCAGAGGAACTTTT 1383
Query 1209 CCAAGAAATGGTTTCACTCGGTGTTCTTCCTGATGCTATGACATATGGTATTTTGCTTGA 1268
||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1384 CCAAGAAATGGTTTCACACGGTGTTCTTCCTGATGTTATGACGTATGGTATTTTGCTTGA 1443
Query 1269 TGGCTTGTGTGACAATGGGAAGCTTGAAAAGGCATTGGAAATTTTTGAGGATTTGCAAAA 1328
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1444 TGGCTTGTGTGACAATGGGAAGCTTGAAAAGGCATTGGAAATTTTTGAGGATTTACAAAA 1503
Query 1329 AAGTAAGATGGATCTTGATATTGTTATGTATACAATCATCATCGAGGGGATGTGCAAGGG 1388
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1504 GAGTAAGATGGATCTTGGTATTGTTATGTATACAACCATCATCGAGGGGATGTGCAAGGG 1563
Query 1389 TGGAAAAGTGGAAGATGCCTGGAATTTATTCTGTAGCCTACCTTGTAAAGGAGTGAAGCC 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 TGGAAAAGTGGAAGATGCCTGGAATTTATTCTGTAGCCTACCTTGTAAAGGAGTGAAGCC 1623
Query 1449 TAATGTTATGACATACACCGTGATGATTTCAGGATTATGTAAGAAAGGGTCACTATCTGA 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1624 TAATGTTATGACATACACCGTGATGATTTCAGGATTATGTAAGAAAGGGTCACTGTCTGA 1683
Query 1509 AGCAAACATCTTGCTTAGAAAAATGGAGGAAGATGGGAATGCGCCAAATGATTGTACATA 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AGCAAACATCTTGCTTAGAAAAATGGAGGAAGATGGGAATGCGCCAAATGATTGTACATA 1743
Query 1569 CAACACACTAATCCGGGCACATCTCCGAGATGGTGACTTAACTGCATCAGCTAAACTTAT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 CAACACACTAATCCGGGCACATCTCCGAGATGGTGACTTAACTGCATCAGCTAAACTTAT 1803
Query 1629 TGAAGAAATGAAGAGTTGTGGGTTCTCAGCAGATGCTTCCAGTATTAAGATGGTTATTGA 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1804 TGAAGAAATGAAGAGTTGTGGGTTCTCAGCAGATGCTTCCAGTATTAAGATGGTTATCGA 1863
Query 1689 TATGTTATCGAGTGC 1703
|||||||| ||||||
Sbjct 1864 TATGTTATTGAGTGC 1878
> AT1G12620.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:4294594-4297084 REVERSE LENGTH=2407
Length=2407
Score = 318 bits (172), Expect = 1e-85
Identities = 326/399 (82%), Gaps = 16/399 (4%)
Strand=Plus/Plus
Query 100 AGAGAGAGATTGAGAAGTGGGATTGTTGATATTAAGGAAGATGATGCTATTGATCTGTTT 159
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 373 AGAGAGAGATTGAGAAGTGGGATTGTTGATATCAAGGAAGATGATGCTGTTGATCTGTTT 432
Query 160 CAAGAAATGATTAAGTCTCGTCCTCTTCCTAGTCTTGTTGATTTCAGTAAATTGTTTAGT 219
|||||||||| || ||||||||||| |||| ||||| |||||||||||| ||||||||||
Sbjct 433 CAAGAAATGACTAGGTCTCGTCCTCGTCCTCGTCTTATTGATTTCAGTAGATTGTTTAGT 492
Query 220 GGTGTTGCAAGCACAAAACAGT-TCAATCTCGTTTTAGATTTCTGCAAG-AAGATGGAAT 277
| |||||| || ||||| || | | | ||| || |||||| |||||||| || |||||||
Sbjct 493 GTTGTTGCCAGAACAAAGCAATATGA-TCTAGTGTTAGATCTCTGCAAGCAA-ATGGAAT 550
Query 278 TGAATGGGA-TTGCTCATAATATCTACACTTTGAATATCATGATCAATTGCTTTTGCCGG 336
| || |||| |||| ||||| |||||||| ||| ||| ||||| ||||||| ||| ||
Sbjct 551 TAAA-GGGAATTGCGCATAACCTCTACACTCTGAGTATTATGATTAATTGCTGTTGTCGA 609
Query 337 TGTTGTAAAACT-TGTTTTGG-TTATTCTGTTTTGGGAAAAGTT-ATGAAGCTTGGGTAT 393
||| ||||| || | ||| || || ||||| | |||| || | | || || |||||||||
Sbjct 610 TGTCGTAAA-CTCTCTTT-GGCTTTTTCTGCTATGGGGAA-GATCATTAAACTTGGGTAT 666
Query 394 GAGCCTGACACAA-CAACGTTTAACA-CTCTGATCAATGGACTCTGTCTCGAGAGTAAAG 451
|||||||| ||| || | ||| || || |||| || ||| | ||||||||| ||| ||
Sbjct 667 GAGCCTGATACAGTCA-CATTTT-CAACTTTGATAAACGGATTATGTCTCGAGGGTAGAG 724
Query 452 TTTCTGAAGCTGTGGTTTTAGTCGCTAGGATGGTGGAAA 490
|||| |||||| ||| ||||| | | | ||||| ||||
Sbjct 725 TTTCCGAAGCTCTGGAATTAGTTGATCGAATGGTTGAAA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99196276920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5