BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471422
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12710.1 | Symbols: AtPP2-A12, PP2-A12 | phloem protein 2-A1... 1530 0.0
> AT1G12710.1 | Symbols: AtPP2-A12, PP2-A12 | phloem protein 2-A12
| chr1:4326739-4328481 REVERSE LENGTH=1274
Length=1274
Score = 1530 bits (828), Expect = 0.0
Identities = 899/934 (96%), Gaps = 1/934 (0%)
Strand=Plus/Plus
Query 60 TTAAGGTTTAGATGGGTGTGGCTCACTCTGATCTTCACAATGATTTGTCTTCTTCATCTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 TTAAGGTTTAGATGGGTGTGGCTCACTCTGATCTTCACAATGATTTGTCTTCTTCATCTT 206
Query 120 GTTTTGGGGATCGGAATCTGTTGAAGCTTGGGTTAGGGGATTTACCAGAGGCGTGTGTGG 179
||||||||||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 207 GTTTTGGGGATCGGAATATCTTGAAGCCTGGTTTAGGAGATTTACCAGAGGCGTGTGTGG 266
Query 180 CTATGATTGTTGAGAATTTGGATCCTGTTGAGATCTGTAGATTCTCAAAGCTCAATAGAG 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 CTATAATTGTTGAGAATTTGGATCCTGTTGAGATCTGTAGATTCTCAAAGCTCAATAGAG 326
Query 240 CATTTCGCGGCGCTTCTTGGGCTGATTGTGTGTGGGAATCGAAGCTTCCTCCGAATTACA 299
||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 327 CATTTCGCGGCGCTTCTTGGGCTGATTGTGTTTGGGAATCGAAACTTCCTCAGAATTACA 386
Query 300 GAGTTGTTCTCGAGAAAATCCTTGGTGGGTTCCCTGAAAATTTGCAAAAAAGAGACCTTT 359
||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 387 GAGATGTTCTCGAGAAAATCCTTGGTGGCTTCCCTGAAAATTTGCAAAAAAGACACCTTT 446
Query 360 ATGCTTGTCTCTGCAGGATTAACTCATTCGATGATGGCACCAAGAAGGTATGGATTGATA 419
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 447 ATGCTTTTCTCTCCAGGATTAACTCATTCGATGATGCCACCAAGAAGGTATGGATAGATA 506
Query 420 AACGAAGCAGTGGTGTTTGTCTATCCATTTCAGCTAAAGGATTATCCATCACAGGCATTG 479
|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 507 AACGAACCAGTGGTGTTTGTCTATCCATTTCAGCCAAAGGATTATCCATTACAGGCATTG 566
Query 480 ATGATCGTAGATATTGGAGTCATATCCCCACTGATGAATCTCGGTTTTCTTCTGTAGCTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATGATCGTAGATATTGGAGTCATATCCCCACTGATGAATCTCGGTTTTCTTCTGTAGCTT 626
Query 540 ATCTCCAACAAATTTGGTGGTTTGAAGTTGATGGTGAAATCGATTTCCCATTTCCGGTTG 599
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 627 ATCTCCAACAAATCTGGTGGTTTGAAGTTGATGGTGAAATCGATTTCCCATTCCCGGTTG 686
Query 600 GAACCTACAGCATTTTCTTCAGGCTTCAATTAGGCCGGCCTGGCAAGTGGTTTGGTCGAC 659
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 687 GAACCTACAGCATTTTCTTCAGGCTTCAATTAGGCCGGTCGGGCAAGTGGTTTGGTCGAC 746
Query 660 GGGTCTGTAACACCGAACAAGTCCATGGTTGGGACATTAAACCGGTTCGATTTCAACTCT 719
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GGGTCTGTAACACAGAACAAGTCCATGGTTGGGACATTAAACCGGTTCGATTTCAACTCT 806
Query 720 GGACTGAAGATGGTCAATATTCCTCATCTCAATGTATGTTAACTGAGCGGGGAAACTGGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 GGACTGAAGATGGTCAATATTCCTCATCTCAATGTATGTTAACTGAGCGGGGAAACTGGA 866
Query 780 TTCATTACCACGCGGGAGACTTTATTGTCCGGGAATCGAATAGGTCATCGACAAAGATAA 839
||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 867 TTCATTACCACGCCGGAGACGTTGTTGTCCGGGAATCGAATAGGTCATCGACAAAGATTA 926
Query 840 AATTTTCGATGACTCAGATCGACTGTACCCATACCAAAGGCGGGTTATCTCTAGACTCTG 899
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 927 AGTTTTCGATGACTCAGATCGATTGTACACATACCAAAGGCGGGTTATCTCTAGACTCTG 986
Query 900 TAGTCGTGTACCCGAGCTCGTGTAAAGGCCAGTTGAAGCGGTTTTAATGTTTCAATCGGA 959
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 987 TAGTCGTGTACCCGAGCTCGTGTAAAGACCAGTTGAAGCGGTTTTAATGTTTCAACCGGA 1046
Query 960 TCCGGTTTAGTGAGAGGTTAAAGGAGG-TTTTTT 992
||||||||||||||||||||||| ||| ||||||
Sbjct 1047 TCCGGTTTAGTGAGAGGTTAAAGCAGGGTTTTTT 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49631337236
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5