BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471424
Length=1681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12730.1 | Symbols: | GPI transamidase subunit PIG-U | chr1... 2257 0.0
AT1G63110.1 | Symbols: | GPI transamidase subunit PIG-U | chr1... 645 0.0
> AT1G12730.1 | Symbols: | GPI transamidase subunit PIG-U | chr1:4334615-4337844
FORWARD LENGTH=1720
Length=1720
Score = 2257 bits (1222), Expect = 0.0
Identities = 1538/1685 (91%), Gaps = 43/1685 (3%)
Strand=Plus/Plus
Query 3 GAAGGAAGAGAAGAAAGACGACGGAGTAATGGCAGAGGAGGAGCCTTACATGTTCTGGAT 62
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 63 GAAGGAGGAGAAGAAAGACGACGGAGTAATGGCTGAGGAGAAGCCTTACATGTTCTGGAT 122
Query 63 TTGGGCTATGGCTTCTACGATTTTCCGATTATTATTGATCttttttttCCCGGAAAATAT 122
|||| || ||||||||||||||||||||||||| ||||| |||| ||||| ||||||
Sbjct 123 TTGGACTTTGGCTTCTACGATTTTCCGATTATTCCTGATC---TTTTCCCCGGCAAATAT 179
Query 123 CAACGC-ATCTTCCCGTCCGGAGCTCTCCACCCCTCTCACCAGCCTTCGCCGCCTTGCTG 181
|||| | |||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 180 CAAC-CTATCTTCCCGTCCGGAGGTCTCCACCCCTCACACCAGCCTTCGCCGCCTTGCTG 238
Query 182 AAGGTTACTGGTTGAAGCAGGCATCACTGTCGCCATACGCAGGGTCAATGTATCATGGCT 241
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 239 AAGGTTACTGGTTGAAGCAGTCATCACTGTCGCCATACGCAGGATCAATGTATCATGGCT 298
Query 242 CTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAATTCAGAGGATTGAAGGGCATTCGA 301
||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 299 CTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAGTTCAGAGGATCGAAGGGCAATCGA 358
Query 302 GTCATCATTTGTGCAGCTTGGTTTTTGTTATTGCAGATATACTTAGTGCGTTGCTTCTTC 361
|||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 359 GTCATCATTTGTGCAGTTTGGTTTTTGTTATTGCAGATTTACTTAGTGCACTGCTTCTTC 418
Query 362 GAGCTACTGGTCAGAAGCTCCAAAAGGCTTACAGATTGAATTTGAGGCGACTTGGCCTTC 421
|||||| ||||||||||||||| ||| |||| ||| |||||||||||| |||||| |||
Sbjct 419 GAGCTATTGGTCAGAAGCTCCAGAAGTCTTATAGAATGAATTTGAGGCCACTTGGTGTTC 478
Query 422 TTACGTCATTACAGGATAGAGGTATCCTCCCTTGTGGAGATATTGCTGCTCTTGTGCACC 481
||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| | |
Sbjct 479 TTAGGTCATCGCAGGATAGAGGGATCCTTCCTTGTGGAGATATTGCTGCTCTTGTGTATC 538
Query 482 TGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCAACTTCTCCAATAGAAAATT 541
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 TGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCTACTTCTCCAATAGAAAATT 598
Query 542 TGGCTGTCATTCAATTGTTGGAAAAAGTGTTCTTATCTATATTGGATGAAAACCCTGCTT 601
|||||| || | || ||| || ||| || |||| | | | |
Sbjct 599 TGGCTG----TC-A---TT-------GTG-TC---TCTTTA-TGGA-G--CA-GTTAC-- 632
Query 602 TCGGACGAGTTCCTCTGGCTGCATTTGGGTTAGTCATGGCCACACACTTGTCTCTTTATT 661
|| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 633 TC-GACGAGTTCCTCTGGCTGCATTTGGGTTAATCATGGCCACACATTTGTCTCTTTATT 691
Query 662 CAGCAACTTTAGCGATTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTG 721
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CAGCACCTTTAGTGTTTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTA 751
Query 722 TaaaaaaaTTCCTTCAGACAAGACATGTTGGAGTTGAGACGACAGGATCAACCTCTGATG 781
||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 752 TAAAAAAGTTCCTTCAGACAAGACATGGAGGGGTTGAGACT---GGATCAACCTCTGATG 808
Query 782 TTTCGAAACAAGACAAGTTGACTCAGACTACACAACTT--TT-CTTATGGAGAACAGTCT 838
|||| |||||||| |||||||||| ||||||||||||| || || ||||||||||||||
Sbjct 809 TTTCTAAACAAGAAAAGTTGACTCCGACTACACAACTTCCTTTCTCATGGAGAACAGTCT 868
Query 839 TGTATTTCGTATTTTGGGTATTGGTGTGGTCGAGCTATGTGTTGGTTTTGTGCAGCTTAT 898
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 869 TGCATTTCGTATTTTGGGTATTGGTTTGGTCGAGCTATGTGTTGGTTTTATGCAGCTTAT 928
Query 899 CATTGAAACAATATGGTGGACTTGAAGAGATGTTCAAAAGGACATATGGTTTCATTCTCA 958
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 929 CATTGAAACAATATGGTGGGCTTGAGGAGATGTTCAAAAGGACTTATGGTTTCATTCTCA 988
Query 959 GAATCGAAGATCTGTCCCCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGTCTTTG 1018
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 989 GAATCGAAGATCTGTCACCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGCCTTCG 1048
Query 1019 ATTTTTCCAGAAATTATCTCCTGATAGTTTTTAACTTATATATTCTGCTTACGGGGATAC 1078
| |||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||
Sbjct 1049 AGTTTTCCAGAAATTATCTCCTGATAATTTTCAACTTATATATTCTCCTTACTTCGATAC 1108
Query 1079 CACCGTTAGCCTTCCGGTTAAAACATCGGCCCTGCTTCCTTGCTTTCGCTTATTTAGCCT 1138
|| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1109 CATCTTTAATGTTCCGGTTAAAACATCGACCCTGCTTCCTTGCTTTCGCTTATTTAGCCT 1168
Query 1139 TCTCCTCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACTTGAGTTTCT 1198
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1169 TCACTTCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACTTGAGTTTAT 1228
Query 1199 GGGCATTGTTTGTCAATGAATTAACAGACATGGAGCACTCGTTCTTTATCTTCTGTGGAT 1258
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1229 GGGCATTGTTTGTCAATGAATTAACAGACATGGAGTACTCGTTCTTTATCTTCTGTGGAT 1288
Query 1259 ATATTGGATTTTCGCTACTCAGCCCTGTGATGCACAATATCTGGATATGGAGGGGAACTG 1318
|||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1289 ATATCGGATTTTCGCTTCTCAGCCCTGTGATGCACAATTTCTGGATATGGAGGGGAACTG 1348
Query 1319 GAAATGCAAACTTTTACTTCGGAAATGCTATGGGCTACGCGTGCTTTCAGTTTATGTTTG 1378
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1349 GAAATGCAAACTTCTACTTCGGAAATGCTATGGGCTATGCGTGCTTTCAGTTTATGTTTG 1408
Query 1379 TGGAGAAAAGTGTAAACGCAATGCTCAACCATGACCAGGCGCTGAAGAACGCTACTGCAG 1438
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1409 TGGAGAAGAGTGTAAACGCAATGCTCAACCACGACCAGGCGCTGAAGAAAGCTACTGCAG 1468
Query 1439 AAATGACTAAGAACTGAGCCATTACAG-CAATTTTTTAATGTTCGGTTTTAAGAGTCTCT 1497
||||||||||||||||||||||||||| || ||||||||| |||||| ||||||||||||
Sbjct 1469 AAATGACTAAGAACTGAGCCATTACAGTCA-TTTTTTAATATTCGGTGTTAAGAGTCTCT 1527
Query 1498 AACCATAAACTT--GTGGCAAAATTAGTGGTCTTCTTTGGCCAAACGCAGAAGCCAAAAA 1555
||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1528 AACTATAAACTTTTGTGGCAAAATTAGTGGTCTTCTTAGGCCAAACGCAGAAGCCAAAAA 1587
Query 1556 ACGTCGAACAACATGTATTAGGGAGTAGATTGGTTTAGTCGTAAAGTGTCACATTTACTA 1615
||| ||||||||||||||||| ||| |||||||||||| |||||||||||||||| | |
Sbjct 1588 GCGTTGAACAACATGTATTAGG-AGTCGATTGGTTTAGTGGTAAAGTGTCACATTTGCCA 1646
Query 1616 GTGATTGTAGTTGCACAGTTTTAACAAGGCTTCAAACTCGGAGATCCAAACCAAATGAGA 1675
||||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||
Sbjct 1647 GTGATTGTAGTTGCACAGTTTAAACAAGACCTCAAACTCGGACATCCAAACCAAATGAGA 1706
Query 1676 CGACA 1680
|||||
Sbjct 1707 CGACA 1711
> AT1G63110.1 | Symbols: | GPI transamidase subunit PIG-U | chr1:23404822-23408052
FORWARD LENGTH=1753
Length=1753
Score = 645 bits (349), Expect = 0.0
Identities = 685/842 (81%), Gaps = 43/842 (5%)
Strand=Plus/Plus
Query 605 GACGAGTTCCTCTGGCTGCATTTGGGTTAGTCATGGCCACACACTTGTCTCTTTATTCAG 664
|||||||||||||||| |||||||| |||||||| |||||||| || ||||||||| | |
Sbjct 605 GACGAGTTCCTCTGGCAGCATTTGGCTTAGTCATTGCCACACATTTATCTCTTTATCCTG 664
Query 665 CAACT-TTAGCGATTCCATTGATCTTTCTGTTGGGATATGGTTTAGATGCCCCTCCTGTa 723
| ||| | | | |||||| | |||||||| |||||||||||||| ||||| |||||| ||
Sbjct 665 CTACTCTGA-CAATTCCAATAATCTTTCTATTGGGATATGGTTTGGATGCTCCTCCTATA 723
Query 724 aaaaaaTTCCTTCAGACAAGACA-TGTTGGAGTTGAGACGACAGGATCAACCTCTGA-TG 781
||| ||||||||||| ||| | ||| | | |||| || | | ||||||||| | ||
Sbjct 724 AAATTGTTCCTTCAGACCAGA-AGTGTAGAAAATGAG--GAGA-GTTCAACCTCT-ACTG 778
Query 782 TTTCGAAACAAGACAAGTTGACTCAGACTACACAAC-T--TTTCTTATGGAGAACAGTCT 838
|||| ||||||| |||||||| |||||||| || | | ||||||||||| |||||||
Sbjct 779 TTTCTAAACAAGCCAAGTTGAAACAGACTACGCACCTTCCTTTCTTATGGAAAACAGTCG 838
Query 839 TGTATTTCGTATTTTGGGTA-TTGGTGTGGTCGA-GCTATGTGTTG-GTTT-TGTGCAGC 894
| ||| | || |||||| || ||||||| | |||||||||| ||| ||||| |
Sbjct 839 CACACTTCTTGTTCTGGGTACTT-CTGTGGTC-ACTCTATGTGTTGATTTTATGTGC--C 894
Query 895 TTATCATTGAA-ACAATATGGTGGACTTGAAGAGATGTTCAAAAGGACATATGGTTTCAT 953
|||||| |||| | |||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct 895 TTATCACTGAATA-AATATGGTGGGCTTGAGGAGATGTTCAAGAGGACGTATGGTTTCAT 953
Query 954 TCTCAGAATCGAAGATCTGTCCCCAAACATTGGTGTCTTTTGGTACTTCTTCGCAGAAGT 1013
||| || || |||||||| || ||||||||||| ||||||||||||||||| ||||||||
Sbjct 954 TCTTAGTATTGAAGATCTTTCACCAAACATTGGAGTCTTTTGGTACTTCTTTGCAGAAGT 1013
Query 1014 CTTTGA-TTTTTCCAGAAA-TTATCTCCTGATAGTTTTTA-ACTTATATATTCTGCTTAC 1070
|| || || || |||||| || | | ||||||| ||||| || || |||||||| || |
Sbjct 1014 ATTCGACTTCTT-CAGAAACTT-TTTTCTGATAG-TTTTACACGTAAATATTCTG-TT-C 1068
Query 1071 GGGGATACCACCGTTAGCCTTCCGGTTAAAACATCGGCCCTGCTTCCTTGCTTTCGCT-T 1129
| ||| || |||||| | |||| ||||||||||| || ||||| |||||| | |
Sbjct 1069 -ATGTTACTGCCCTTAGCCATAAGGTTGAAACATCGGCCATGTTTCCTGGCTTTC-ATAT 1126
Query 1130 ATTTAGCCTTCTCCTCGATTCTTAAATCTTATCCTTCAGTTGGAGATGCAGCTTTATACT 1189
| ||||| ||||||||||||||||||||||||||||||| |||||| | || |||||||
Sbjct 1127 ACTTAGCGATCTCCTCGATTCTTAAATCTTATCCTTCAGTCGGAGATTCGGCGTTATACT 1186
Query 1190 TGAGTTTCTGGGCATTGTTTGTCAATGAATTAACAGACATGGAGCACTCGTTCTTTATCT 1249
|||| || |||||||||||||||||||| ||| ||| ||| || ||||||||| |||
Sbjct 1187 TGAGCTTATGGGCATTGTTTGTCAATGAGTTATTAGATATGAAGTTCTCGTTCTTCCTCT 1246
Query 1250 TCTGTGGATATATTGG-ATTTTCGCTACTCAGCCCTGTGATGCACAATATCTGGATATGG 1308
||||||||||| | || || | | || ||||||||||||||||||||| |||||||||||
Sbjct 1247 TCTGTGGATATCTCGGGATCT-CTCTCCTCAGCCCTGTGATGCACAATCTCTGGATATGG 1305
Query 1309 AGGGGAACTGGAAATGCAAACTTT-TACTTCGGAAATGCTATGGGCTACGCGTGCTTTCA 1367
||||||| ||||||||||| ||| ||||| ||||| ||||| |||||||||||||||||
Sbjct 1306 CGGGGAACCGGAAATGCAAA-TTTCTACTTTGGAAACGCTATCGGCTACGCGTGCTTTCA 1364
Query 1368 GTTTATGTTT-GTGGA-GAAAAGTGTAAACGCAATGCTCAACCATGACCAGG-CGCTGAA 1424
| | | ||| |||| || | | |||| ||||||||| ||||||||| ||| |||||||
Sbjct 1365 GATCGT-TTTCGTGGTTGAGA-GCGTAAGCGCAATGCTAAACCATGAC-AGGGCGCTGAA 1421
Query 1425 GA 1426
||
Sbjct 1422 GA 1423
Score = 460 bits (249), Expect = 1e-128
Identities = 423/505 (84%), Gaps = 19/505 (4%)
Strand=Plus/Plus
Query 55 TTCTGGATTTGGGCTATGGCTTCTA-CGATTTTCCGATT-ATTATTGATCttttttttCC 112
||||||||||||||| | |||| | | ||||||||| | | |||||| | ||||
Sbjct 85 TTCTGGATTTGGGCTTTATCTTCCATTG-CTTTCCGATTGA-TCTTGATC---TCCTTCC 139
Query 113 CGGAAAATATCAA-CGCATCTTCCCGTCCGGAGCTCTCCACCCCTCTCACCAGCCTTCGC 171
||| |||| |||| | | ||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 140 CGGGAAATCTCAATCTC-TCTTCCCGTCCGGAGGTCTCTACCCCTCTCACCAGCATTCGC 198
Query 172 CGCCTTGCTGAAGGTTACTGGTTGAAGCAGGCATC-ACTGTCGCCATACGCAGGGTCAAT 230
||||||||||||||||| ||||||||||||||||| | |||| ||||| ||||| || ||
Sbjct 199 CGCCTTGCTGAAGGTTATTGGTTGAAGCAGGCATCGA-TGTCACCATATGCAGGATCTAT 257
Query 231 GTATCATGGCTCTCCATTGCTACTCTCCATTCTCGGTCCTCTCACAATTCAGAGGATTGA 290
|||||||||||| |||||||| ||||| |||| || ||||||||| |||| |||||| |
Sbjct 258 GTATCATGGCTCACCATTGCTGCTCTCGGTTCTTGGACCTCTCACAGTTCAAAGGATTAA 317
Query 291 AGGGCATTCGAGTCATCAT-TTGTGCAGCTTGGTTTTTGTTATTGCAGATATACTTA-GT 348
|||||| | ||||| | | ||||||||||||||||||||||||||||||||| ||| ||
Sbjct 318 AGGGCAACCAAGTCACC-TCTTGTGCAGCTTGGTTTTTGTTATTGCAGATATA-TTAAGT 375
Query 349 GCGTTGCTTCTTCGAGCTACTGGTCAGAAGCTCCAAAAGGCTTACAGATTGAATTTGAGG 408
|| ||||||||||||||| ||||||||| ||||| | |||||| || ||||| |||
Sbjct 376 GCAATGCTTCTTCGAGCTATTGGTCAGAAACTCCAGATGGCTTATGGACTGAATGCGAGA 435
Query 409 CGACTTGGCCTTCTTACGTCATTACAGG-ATAGAG-GTATCCTCCCTTGTGGAGATATTG 466
| |||||| |||||| ||||| | ||| ||| || | ||||| |||||||| |||||||
Sbjct 436 CTACTTGGTTTTCTTAAGTCATCA-AGGGATAAAGTG-ATCCTACCTTGTGGTGATATTG 493
Query 467 CTGCTCTTGTGCACCTGTGGAATCCTTTCACAATACTTTCTTGTGTTGGCTTATCAACTT 526
||||||||||| | |||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 494 CTGCTCTTGTGTATTTGTGGAATCCTTTCACGATAGTTTCTTGTGTGGGCTTATCAACTT 553
Query 527 CTCCAATAGAAAATTTGGCTGTCAT 551
|||| || ||||| ||||||||||
Sbjct 554 CTCCCATCGAAAACCTGGCTGTCAT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83081901975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5