BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471427
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12750.1 | Symbols: ATRBL6, RBL6 | RHOMBOID-like protein 6 |... 1550 0.0
AT1G63120.1 | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23... 468 6e-131
> AT1G12750.1 | Symbols: ATRBL6, RBL6 | RHOMBOID-like protein 6
| chr1:4344985-4348327 REVERSE LENGTH=1354
Length=1354
Score = 1550 bits (839), Expect = 0.0
Identities = 1079/1192 (91%), Gaps = 28/1192 (2%)
Strand=Plus/Plus
Query 24 GTTTCTGCAGGAGATGGGATAATCCGTAAGCGCTCCTATGCGAATCTGCAATGGGGTTGA 83
|||||||||||||||| ||| || | | ||||||||||||||||| |||| ||| |
Sbjct 87 GTTTCTGCAGGAGATGAGATGAT-C-T-----CTCCTATGCGAATCTGCTATGGAGTTCA 139
Query 84 ATCGTATCTCCAGCTACGCAGTCTTTTGCGT-AAGCTAGC-CCTTGTTCGAG--AAAC-A 138
||| ||||||||||| ||||||| ||| | | | || | || | || || | |
Sbjct 140 ATCATATCTCCAGCTTCGCAGTCCCTTG-TTCATGATA-CAGCTAAAAC-AGCCAACCTA 196
Query 139 GTCTCAGGTCTGAGATTTTTATCAGAAAGTTTAAGGAAAATATCTTGAAGGAG-CTGCCA 197
| ||||||||||||| |||||||||||||| |||| |||||||||||| ||| ||||||
Sbjct 197 G--TCAGGTCTGAGATATTTATCAGAAAGTTAAAGG-AAATATCTTGAAAGAGCCTGCCA 253
Query 198 CCACCGAGAAGAGAATTGAAGAAACATCAATTGTGTTCTTCATACGACGAGAGAAGAG-A 256
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 254 CCACCGAGAAGAGAATTGAAGAAACACCAATTCTGTTCTTCATACGACGAGAGAAGAGAA 313
Query 257 AAATGTCGAGTAGAGATATGGAGAGAGGTAGGAAACACAGAGGGGACACCCAGTGGACGT 316
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AAATGAGGAGTAGAGATATGGAGAGAGGTAGGAAACACAGAGGGGACACCCAGTGGACGG 373
Query 317 CGTGGCTGACTCCAACAATTGTCGTGGCTAATGTCACCATCTTCATCGTGGTCATGTTCA 376
| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 374 CTTGGCTGACTCCAACAATTGTCGTGGCTAATGTCTCCATCTTCATCGTTGTCATGTACA 433
Query 377 TCAACGACTGCCCTAAGACAACCAGGGGAGCTAACGAAGATTGCGTGGCAAAGTTTCTCG 436
||||||||||||||||||||||| |||||| |||| ||||||||| |||||| |||||
Sbjct 434 CCAACGACTGCCCTAAGACAACCACGGGAGCCAACGGAGATTGCGTTGCAAAGCTTCTCC 493
Query 437 GCAGGTTCTCGTTTCAGCCGCTCAGAGAGAACCCTCTCTTGGGTCCATCTTCTTCAACAT 496
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 494 GCAGGTTCTCGTTTCAGCCACTCAGAGAGAACCCTTTCTTGGGTCCATCTTCTTCAACAT 553
Query 497 TGGAGAAAATGGGAGCTTTGGATTGGAGGAAAGTTGTGCAAGGAAATGAAAAATGGAGGC 556
|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 554 TGGAGAAATTGGGAGCTTTGGATTGGAAGAAAGTCGTGCAAGGAAATGAAAAATGGAGGC 613
Query 557 TCATCACTGCAATGTGGCTCCATGCTGGTATCTTTCACCTTTTTACT-AATATGTTTAAT 615
|||||||||| |||||||||||||| |||||| |||||||| ||| | ||||||||| ||
Sbjct 614 TCATCACTGCTATGTGGCTCCATGCCGGTATCATTCACCTTGTTA-TGAATATGTTTGAT 672
Query 616 GTGATCATATTCGGTATCCGCCTTGAGCAGCAGTTTGGCTTCCTAAGAATTGGGCTCATC 675
|||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 673 GTGATCATCTTCGGTATCCGCCTTGAGCAACAGTTTGGCTTCATAAGGATTGGGCTCATC 732
Query 676 TACT-TGATATCGGGATTTGGCGGAAGCATTCTCTCAGCTCTCTACCTTCAAAATAGCAT 734
|| | |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 733 TA-TCTGATTTCGGGATTTGGCGGAAGCATTCTCTCAGCTCTCTTCCTTCAAAAAAGCAT 791
Query 735 CTCTGTTGGTGCCTCGGGTGCTCTCCTTGGACTCATTGGAGCAATGTTATCCGAGCTGGT 794
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 792 CTCTGTTGGTGCCTCGGGTGCTCTCCTTGGACTCATGGGAGCAATGTTATCTGAGCTGCT 851
Query 795 CATCAACTGGACTATCTACGAGAGCAAGCTATGTGCTTTGTTCA-CGATCTTGTTCATCA 853
|| |||||||||||||||| |||||||||| ||||||||||| | || ||||||||||||
Sbjct 852 CACCAACTGGACTATCTACAAGAGCAAGCTTTGTGCTTTGTT-ATCGTTCTTGTTCATCA 910
Query 854 TCGCACTCGATTTAGCAATAGGTTTGCTTCCTTGGGTTGACAACTTTGCTCACATTGGGG 913
||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 911 TCGCAATCAATTTGGCAATAGGTTTGCTTCCTTGGGTAGACAACTTTGCTCACATTGGCG 970
Query 914 GGCTCTTGACTGGATTTTTCCTTGGGTTTATCCTACTGATCCAGCCTCAGGT-GGGGTGG 972
| ||||||||||| |||| ||||||||||||||||||||| |||||||| || ||||||
Sbjct 971 GTCTCTTGACTGGGTTTTGCCTTGGGTTTATCCTACTGATGCAGCCTCA-GTCTGGGTGG 1029
Query 973 GAAGAGTCCCGCAACTCTTCTCAGTACGGTGCACGTGCCAAATCAAAGTATAACCCGTGC 1032
||||||| |||||||||||||||||||||||| ||||| | |||||| ||||||||||||
Sbjct 1030 GAAGAGTTCCGCAACTCTTCTCAGTACGGTGCCCGTGCTAGATCAAAATATAACCCGTGC 1089
Query 1033 CAGTACTTGTTGTTCTTTATTGCCGCTGTTTTGGTCGTCGCCGGTTTAACAATTGGGTTG 1092
|||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1090 CAGTACGTGTTGTTCTTTGTTGCCGCTGTTTTGGTTGTCGCCGGTTTAACAGTTGGGTTG 1149
Query 1093 GTGATGCTGTTCAAAGGAGAGAATGGGAACAAACATTGCAAATGGTGTCATCGCCTAGAC 1152
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1150 GTGATGCTGTTCGACGGAGAGAATGGGAACAAGCATTGCAAATGGTGTCATCGCCTAGAC 1209
Query 1153 TGTTATCCTACTTCTAAATGGTCTTGTTGATATTTCAATCATTTTTACTGTA 1204
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1210 TGTTATCCTACTTCTAAATGGTCTTGTTGATATTTCAATCATCATTACTGTA 1261
> AT1G63120.1 | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23408876-23410815
REVERSE LENGTH=1222
Length=1222
Score = 468 bits (253), Expect = 6e-131
Identities = 683/885 (77%), Gaps = 51/885 (6%)
Strand=Plus/Plus
Query 310 TGGACGTCGTGGCTGACTCCAACAATTGTCGTGGCTAATGTCACCATCTTCATCG-TGGT 368
||||| || ||||||| ||| | ||||| ||||| ||| || | |||| |||| | ||
Sbjct 181 TGGACTTCATGGCTGATTCCGGCGATTGTAGTGGCAAATCTCGCTGTCTTTATCGCT-GT 239
Query 369 CATGTTCATCAACGACTGCCCTAAGACAACCAGGGGAGCTAACGAAGATTGCGTGGCAAA 428
|||||| | || || || ||||||| || || ||| ||||| |||| || || || |
Sbjct 240 TATGTTCGTTAATGATTGTCCTAAGAAAATCACCGGACCTAACAAAGAGTGTGTTGC-TA 298
Query 429 G-TTTCTCGGCAGGTTCTCGTTTCAGCCGCTCAGAGAGAACCCTCTCTTGGGTCCATCTT 487
| || ||||| || ||||||||||| || || | |||||| |||||||| ||||| ||||
Sbjct 299 GATTCCTCGGAAGATTCTCGTTTCAACCACTTAAAGAGAATCCTCTCTTTGGTCCTTCTT 358
Query 488 CTTCAACATTGGAGAAAATGGGAGCTTTGGATTGGAGGAAAGTTGTGCAAGGAA-ATGAA 546
||||||||||||||||||||||||| ||||| ||||||||||| || || | || || ||
Sbjct 359 CTTCAACATTGGAGAAAATGGGAGCATTGGAATGGAGGAAAGTAGTACATG-AACATCAA 417
Query 547 AAATGGAGGCT-CATCACT-GCAATGTGGCTCCATGCTGGTATCTTTCACCTTTTTACTA 604
|||||| || | || || | | ||||||| || ||||||||| |||| ||| |||| |
Sbjct 418 GGATGGAGACTTC-TCTCTTGTA-TGTGGCTTCACGCTGGTATCATTCATCTTCTTACAA 475
Query 605 ATATGTTTAATGTGATCAT-ATTCGGTATCCGCCTTGAGCAGCAGTTTGGCTTCCTAAGA 663
| ||||| | | ||||| | ||| |||||||||||||||||||| ||||||||| |||||
Sbjct 476 ACATGTTGAGTTTGATCTTCATT-GGTATCCGCCTTGAGCAGCAATTTGGCTTCATAAGA 534
Query 664 ATTGGGCTCATCTACTTGATATCGGGATTT-GGCGGAAGCATTCTCTCAG-CTCTCTACC 721
| ||| | || ||||| |||||||| | | || |||||||| || || | | || | ||
Sbjct 535 GTCGGGTTGATATACTTAATATCGGG-TCTCGGTGGAAGCATACTTTC-GTCGCTTTTCC 592
Query 722 TTCAA-AATAGCATCTCTGTTGGTGCCTCGGGTGCTCTCCTTGGACT-CATTGGAGCAAT 779
||||| || || |||||||||||||| |||||||||||| ||||||| | ||||||||||
Sbjct 593 TTCAAGAA-AGTATCTCTGTTGGTGCTTCGGGTGCTCTCTTTGGACTTC-TTGGAGCAAT 650
Query 780 GTTATCCGAGCTGGTCATCAACTGGACTATCTACGAGAGCAAG-CTATGTGCTTTGTTCA 838
|||||| || || | | ||| ||||||||||| | | |||| | |||| || |||
Sbjct 651 GTTATCTGAACTTCTTACCAATTGGACTATCTATGCCAACAAGGCGGC-TGCTCTGATCA 709
Query 839 CGA-T-CTTGTTCATCATCGCACTCGATTTAGCAATAGGTTTGCTTCCTTGGGTTGACAA 896
| | | || ||||||||||||| || | |||||| |||| |||||||| ||||||||||
Sbjct 710 C-ACTTCT-GTTCATCATCGCAATCAACTTAGCATTAGGCATGCTTCCTCGGGTTGACAA 767
Query 897 CTTTGCTCACATTGGGGGGCTCTTGACTGGATTTTTCCTTGGGTTTATCCTACT-GATCC 955
|||||| |||||||| ||| | || || ||||| | ||| |||||| |||| || | |||
Sbjct 768 CTTTGCACACATTGGAGGGTTTTTAACCGGATTCTGCCTCGGGTTTGTCCTCCTTG-TCC 826
Query 956 -AGCCTCAGGTGGGGT-GGGAAGAGTCCCGCAACTCTTCTCAGTACGGTGCACGTGCCAA 1013
| |||||| | ||| |||||| ||||||| | | | | | || | || | ||
Sbjct 827 GA-CCTCAG-TACGGTTGGGAAGCTTCCCGCA-C-CAACACT-T-CGC-GAAC---C-AA 875
Query 1014 ATC-AAAGTATAACCCGTGCCAGTACTTGTTGTTCTTTA-TTGCCGCTGTTT-TGGTCGT 1070
| | |||||||| | || ||||||| || |||| | || || | | || | | | ||
Sbjct 876 A-CGAAAGTATAGCATGTACCAGTACGTGCTGTT-TGTAGTTTCAG-TGGTGCTACTTGT 932
Query 1071 CGCCGGTTTAACAATTGGGTTGGTGATGCTGTTCAAAGGAGAGAATGGGAACAAACATTG 1130
| || |||| ||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 933 GGTTGGGCTAACGGTTGCATTAGTGATGCTTTTCAAAGGAGAGAATGGGAACAAACATTG 992
Query 1131 CAAATGGTGTCATCGCCT-AGACTGTTATCCTA-CTTCTAAATGG 1173
||||||||||||| ||| || ||||| ||| | |||||||||||
Sbjct 993 CAAATGGTGTCATTACCTTAG-CTGTT-TCCCAACTTCTAAATGG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5