BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471429
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 2104 0.0
AT1G63170.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 758 0.0
> AT1G12760.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr1:4348498-4350867 FORWARD LENGTH=1812
Length=1812
Score = 2104 bits (1139), Expect = 0.0
Identities = 1329/1415 (94%), Gaps = 36/1415 (3%)
Strand=Plus/Plus
Query 313 GGAGACAAGGGTTGAGAGAAGCCGCGAGGTTTCTAAGTCGTGCAAGTAGCGGACGTGTGA 372
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||
Sbjct 385 GGAGACAAGGGTTGAGAGAAGCTGCGAGGTTTCTTAGTCGTGCTAGTAGCGGACGCGTGA 444
Query 373 TGCGTGAGCCTTCTATGCTTGTGAGGGAAGCCGCGGCGGAGCAGCTGGAGGAGAGGCAGA 432
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 445 TGCGTGAGCCATCTATGCTTGTGAGAGAAGCCGCGGCGGAGCAGCTCGAGGAGAGGCAGA 504
Query 433 GCGATTGGGCTTATTCGAAGCCTGTGGTGGTGCTTGATATTGTGTGGAATCTGGCTTTTG 492
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 505 GCGATTGGGCTTATTCGAAGCCTGTGGTGGTGCTTGATATCGTTTGGAATCTGGCTTTTG 564
Query 493 TTTCGGTTGCTACGGCTATTTTGGTGATGAGCCGGAATGAACATCCGATTATGCCGCTTA 552
|||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 565 TTTCTGTTGCTACGGCTATTTTGGTGATGAGCAGGAAAGAACATCCGATTATGCCGCTTA 624
Query 553 GAGTTTGGCTTTTGGGGTATGCTTTGCAATGCGTGTTGCATATGGTTTGTGTGTGTGTTG 612
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 625 GAGTTTGGCTTTTGGGGTATGCTTTGCAATGCGTGTTGCATATGGTTTGTGTCTGTGTTG 684
Query 613 AGTATCGGAGGAGGAATAGGAGGAGAACCAATA-G--GACGACGACGA---CTCCACGCT 666
|||||||||||||||| |||||||||||||||| | ||||||||||| ||||||| |
Sbjct 685 AGTATCGGAGGAGGAACAGGAGGAGAACCAATAGGACGACGACGACGACTCCTCCACGGT 744
Query 667 CACGttcttcttcttcctcttcatcttcttcttccttGGAGGAAGATGCTTTGGGTTCCA 726
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 745 CACGTTCTTCTTCTTCCTCTTCATCTTCTTCTTCCTTGGAGGAAGAAGCTTTGGGTTCCA 804
Query 727 GGAGGAATTCAGGTGAGCAGGACTTGTCCCTCGGCCACTTGGATACCGAAAGCAGCAGTG 786
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 805 GGAGGAATTCAGGTGTGCAGGACTTGTCGCTTGGCCACTTGGATACCGAAAGCAGCAGTG 864
Query 787 TTGCAAAACATCTGGAATCTGCCAATACAATGTTTTCCTTTATATGGTGGATCATTGGAT 846
|||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 865 TTGCTAAGCATCTGGAATCTGCCAATACGATGTTTTCTTTTATATGGTGGATCATTGGAT 924
Query 847 TCTACTGGGTATCTGCTGGTGGCCAAGAGTTGGCACAAGAATCCCCTCGGATTTACTGGC 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TCTACTGGGTATCTGCTGGTGGCCAAGAGTTGGCACAAGAATCCCCTCGGATTTACTGGC 984
Query 907 TGTCTATTGTCTTTCTTGGTTTCGAtgtgttttttgttgtcttctgtgttgcgttggcct 966
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 985 TGTCTATTGTCTTTCTTGGTTTCGATGTGTTCTTTGTTGTCTTCTGTGTTGCGTTGGCCT 1044
Query 967 gtgttattggaattgctgtttgctgttgcCTGCCATGCATCATTGCAGTTTTGTACGCTG 1026
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GCGTTATTGGAATTGCGGTTTGCTGTTGCCTGCCATGCATCATTGCAGTTTTGTACGCTG 1104
Query 1027 TTGCAGATCAGGAAGGGGCTTCAAAAGAAGACATTGAGCAGCTCACCAAATTCAAGTTTC 1086
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TTGCTGATCAGGAAGGGGCTTCAAAAGAAGACATTGAGCAGCTCACCAAATTCAAGTTTC 1164
Query 1087 GCAAAGTAGGTGATGCTAACAGACACACTGGTGATGAAGCCCAAGGAACTACCGAGGGAA 1146
||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1165 GCAAACTAGGTGATGCCAACAAACACACTAATGATGAAGCCCAAGGAACTACCGAGGGAA 1224
Query 1147 TAATGACTGAGTGTGGTACAGATTCACCCATTGAACATACTCTATTGCAAGAGGATGCAG 1206
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1225 TAATGACTGAGTGTGGTACAGATTCACCCATTGAACATACTCTTTTGCAAGAAGATGCAG 1284
Query 1207 AATGTTGCATCTGTCTCTCTGCATATGAAGATGGAACAGAGCTAAGGGAACTACCTTGTG 1266
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1285 AATGTTGCATCTGTCTCTCTGCATATGAAGACGGAACAGAGCTAAGGGAACTACCTTGTG 1344
Query 1267 GACACCATTTCCACTGTTCGTGCGTAGACAAATGGCTATACATCAACGCGACTTGCCCAC 1326
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 GACACCATTTCCACTGTTCATGCGTAGACAAATGGCTATACATCAACGCGACTTGCCCAC 1404
Query 1327 TCTGCAAATACAACATCCTCAAGAGTAGCAACTTGGATCGAGAGGAAGTCTAGAAAAAAC 1386
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1405 TCTGCAAATACAACATCCTCAAGAGTAGCAACTTGGATCGAGAGGAAGTCTAGAGGAAAC 1464
Query 1387 AGCTTTACGTGTTCATGACCCACAACATTTGATCAGGAGACTTGGGGTTAAGGTAAAAAA 1446
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1465 AACTTTACGTGTTCATGACCCACGACATTTGATCAGGAGACTTTGGGTTAAGGTAAAAAA 1524
Query 1447 CAAGACTGGTTTGTTTTTT-AGATATGATGCATTGTTTGTGATATGATAATGATATCTAT 1505
||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct 1525 CAAGACTGGTTTGTTTTTTTAGATACGATGCATTGTTTGTGAAATGATAATGATATCTAT 1584
Query 1506 AC----TT-----------GTTT-TTT--G------G-TTTGGAAACTAATCAGGTCTGT 1540
|| || |||| ||| | | ||||||||||||||||||||||
Sbjct 1585 ACGAAATTATTACACTTTTGTTTGTTTTTGATTTTTGGTTTGGAAACTAATCAGGTCTGT 1644
Query 1541 ACATCTATCTGTATCTATCTTCTTTCACTTGAAACCAATGTTTTGTAGTTTGTACTACCT 1600
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1645 ACATCTATCTGTATCTATCTTCTTTTACTTGAAACCAATGTTTTGTAGTTTGTATTACCT 1704
Query 1601 CTTTCT--C--AGTCGACCTCGAATTGTTAGAGATTTTCATCATCTTAGATCTTTAGTTA 1656
|||||| | |||||||||||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1705 CTTTCTTTCTCAGTCGACCTCGAATTGTTAGAGATTTCCATCATCGTAGATCTTTAGTCA 1764
Query 1657 TGTGTCAATGACGATTTTGATTGTTAATTTAAAGT 1691
||| |||||||||||||||||||||| ||||||||
Sbjct 1765 TGTCTCAATGACGATTTTGATTGTTACTTTAAAGT 1799
Score = 383 bits (207), Expect = 3e-105
Identities = 289/327 (88%), Gaps = 11/327 (3%)
Strand=Plus/Plus
Query 1 TATTTTTCTGTTAATTTTCCTTAATCATCATCACCTTCATGATCATCAtctctctctctt 60
||||||||||||||||| ||||||||||||||| | || | |||||||||||||||||||
Sbjct 11 TATTTTTCTGTTAATTTCCCTTAATCATCATCATCGTCTTCATCATCATCTCTCTCTCTT 70
Query 61 ctcGTCGTTCCTCTTTCTTTACACGCTTGAAACCCTAGCAGTTCCAATTTCGTTTTCTCT 120
||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 71 CTCTTCGTTCCTCTTTCTTTACACGCTTGAAACCCTAGCAATTTCAATTTCGTTTCCTCT 130
Query 121 GATTA-AATCTTC-TCCTTTTTATGGCGTAACGCCACACGAATTTCAACAATTTAG-TTT 177
|| | ||||||| || |||||||||||||||| |||||||||||||| |||||| |||
Sbjct 131 AAT-AGAATCTTCATC-TTTTTATGGCGTAACGTTACACGAATTTCAACGATTTAGGTTT 188
Query 178 CtttttttGGTT---GAAGAATCAAACGCAAGGATAGAAACAATGTCAACGGAGACTACT 234
||||||| || |||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 189 TTTTTTTTTTTTTTTGAAGAATCAAACACAAAGATAGAAACAATGTCAACGGAGACTACC 248
Query 235 ACGGGGAATTCCTCATCGATTCCAGCATCATCATCATC---ATCCTCCGACGCCATCGAT 291
||||| |||||||| | |||||||||||||||||||| |||||||||||| ||||||
Sbjct 249 ACGGGAAATTCCTCGTTAATTCCAGCATCATCATCATCGTCATCCTCCGACGCAATCGAT 308
Query 292 CCAGCACCGTTGCTTTTTAATGGAGAC 318
||||| |||||||||||||| || |||
Sbjct 309 CCAGCTCCGTTGCTTTTTAACGGCGAC 335
> AT1G63170.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr1:23425352-23427311 FORWARD LENGTH=1606
Length=1606
Score = 758 bits (410), Expect = 0.0
Identities = 879/1099 (80%), Gaps = 58/1099 (5%)
Strand=Plus/Plus
Query 315 AGACAAGGGTTGAGAGAAGCCGCGAGGTTTCTAAGTCGTGCAAGTAGC-GGACG--TG-T 370
||||||||||| |||||||| |||||||| ||||| | |||||||||| ||| | || |
Sbjct 298 AGACAAGGGTTAAGAGAAGCGGCGAGGTTACTAAGACATGCAAGTAGCGGGA-GAATGAT 356
Query 371 GATGCGTGAGCCTTCTATGCTTGTGAGGGAAGCCGCGGCGGAGCAGCTGGAGGAGAGGCA 430
|||| | ||||| || |||||||| | ||||| ||||| |||||||| || ||||| ||
Sbjct 357 GATGAGAGAGCCATCGATGCTTGTTCGTGAAGCTGCGGCTGAGCAGCTTGAAGAGAGACA 416
Query 431 GAGCGATTGGGCTTATTCGAAGCCTGTGGTGGTGCTT-GATATT-GTGTGGAATCTGGCT 488
|||||||||||||||||||| ||||| ||||| || ||| || || |||||||| |||
Sbjct 417 AAGCGATTGGGCTTATTCGAAACCTGTAGTGGT-TTTGGAT-TTCGTTTGGAATCTTGCT 474
Query 489 TTTGTTTCG--GTTGCTACGGCTATTTTGGTGA-TGAGCCG-GAATGA-ACATCCGATTA 543
|||| ||| |||||||| ||| ||||||| | | ||| | | |||| | |||||| ||
Sbjct 475 TTTG--TCGTTGTTGCTACAGCTGTTTTGGT-ACTTAGCAGCG-ATGAGA-ATCCGAATA 529
Query 544 TGCCGCTTAGAGTTTGGCTT-TTGGGGTATGCTTTGCAATGCGTGTTGCATATGGTTTGT 602
|||| ||||| |||||| || || ||||||| |||||||| || ||||||||||||||
Sbjct 530 TGCCTCTTAGGGTTTGGATTATT-GGGTATGGGTTGCAATGTATGATGCATATGGTTTGT 588
Query 603 GTGTGTGTTGAGTATCGGAGGAGGAATAGGAGGAGAACCAATAGGACGACGACGACTCCA 662
|| |||||||||||||| ||||||||||| || |||| | | || || || ||||
Sbjct 589 GTTTGTGTTGAGTATCGTAGGAGGAATAGTAGAAGAA--GA-A-GA-GA-TTTGAGTCCA 642
Query 663 CGCTC-ACGttcttcttcttcctcttcatcttcttct-tccttGGAGGAAGATGCTTTGG 720
| || | | ||||||||||| ||||| ||||||||| | | || ||||| | |||||
Sbjct 643 AGATCTA-GCTCTTCTTCTTCTTCTTCTTCTTCTTCTATGGAT-GAAGAAGAAGGTTTGG 700
Query 721 GTTCCAGGAGGAATTCAGGTGAGCAG-GACTTGTCCCTCGGCCACTTGGATACCGAAAGC 779
||| || || || |||| ||| | | ||||| || || || || || | |||| |
Sbjct 701 GTTTGAGTAGAAACTCAGATGAAC-GTTACTTGGAGCTAGGTCAATTAGAGAATGAAAAC 759
Query 780 AGCAGTGTTGCAAAACATCTGGAATCTGCCAATACAATGTTTTCCTTTATATGGTGGATC 839
| ||| |||| || ||||| |||||||| ||||| ||| | || |||||||||||| |
Sbjct 760 AATAGTTTTGCTAAGCATCTAGAATCTGCAAATACGATGATCTCATTTATATGGTGGGTT 819
Query 840 ATTGGATTCTACTGGGTATCTGCTGGTGGCCAAGAGTTGGCACAAGAATCCCCTCGGATT 899
|||||||| || ||||||||| ||||||| |||||||| ||||||| |||||| | | ||
Sbjct 820 ATTGGATTTTATTGGGTATCTTCTGGTGGTCAAGAGTTAGCACAAGGATCCCCACAGCTT 879
Query 900 TACTGGCTGTCTATTGTCTTTCTTGGTTTCGAtgtgttttttgttgtcttctgtgttgcg 959
|| ||| ||| ||| ||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 880 TATTGGTTGTGTATAGTCTTTCTTGGTTTCGATGTGTTCTTTGTTGTTTTCTGCGTTGCA 939
Query 960 ttggcctgtgttattggaattgctgtttgctgttgcCTGCCATGCATCATTGCAGTTTTG 1019
||||| |||||||| || |||||||||||||| ||| |||| ||||||||||||||| |
Sbjct 940 TTGGCTTGTGTTATCGGCATTGCTGTTTGCTGCTGCTTGCCTTGCATCATTGCAGTTCTA 999
Query 1020 TACGCTGTTGCAGATCAGGAAGGGGCTTCAAAAGAAGACATTGAGCAGCTCACCAAATTC 1079
||||| || ||||| |||||||| ||||| |||||||||||||| || || || ||||||
Sbjct 1000 TACGCCGTAGCAGAACAGGAAGGAGCTTCGAAAGAAGACATTGACCAACTTACTAAATTC 1059
Query 1080 AAGTTTCGCAAA-GTAGGTGATGCTAACAGACACACTGGTGATGAAG--C----CCAAGG 1132
|| || || ||| || |||||| ||| | |||||||| |||||||| | |||||
Sbjct 1060 AAATTCCG-AAAGGTTGGTGATACTATGAAACACACTGTTGATGAAGAACAAGGACAAGG 1118
Query 1133 A-ACTAC-CGAGGGAATAATGACTGAGTGTGGTACAGATTCACCCATTGAACATACTC-T 1189
| | | | || ||| | |||||||| |||||||||||||||||| |||||||| ||| |
Sbjct 1119 AGA-TTCTGGA-GGAGTGATGACTGAATGTGGTACAGATTCACCCGTTGAACATGCTCTT 1176
Query 1190 ATTGCAAGAGGATGCAGAATGTTGCATCTGTCTCTCTGCATATGAAGATGGA-ACAGAGC 1248
| || |||||||||||||| ||||| ||||| || || |||||||| || |||||||
Sbjct 1177 CCT-CATGAGGATGCAGAATGCTGCATTTGTCTTTCCGCTTATGAAGA-CGAGACAGAGC 1234
Query 1249 TAAGGGAACTACCTTGTGGACACCATTTCCACTGTTC-G-TGCGTAGACAAATGGCTATA 1306
|||| ||||| |||||||| ||||||||||| | | | | || || || |||||||| ||
Sbjct 1235 TAAGAGAACTTCCTTGTGGCCACCATTTCCA-T-TGCGGTTGTGTGGATAAATGGCTTTA 1292
Query 1307 CATCAACGCGACTTG-CCCACTCTGCAAATACAACATCCTCAAGAGTAGCAACTT-G--G 1362
||| || || ||||| ||| |||||||||||||||||||||||||||||||||| | |
Sbjct 1293 CATAAATGCTACTTGTCCC-CTCTGCAAATACAACATCCTCAAGAGTAGCAACTACGAAG 1351
Query 1363 ATCGAGAGGAAGTCTAGAA 1381
| | ||||||||||||||
Sbjct 1352 AAGGCGAGGAAGTCTAGAA 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83583907425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5