BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471430
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleo... 3086 0.0
> AT1G12770.1 | Symbols: ISE1, EMB1586 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr1:4351064-4353685
FORWARD LENGTH=2069
Length=2069
Score = 3086 bits (1671), Expect = 0.0
Identities = 1923/2041 (94%), Gaps = 32/2041 (2%)
Strand=Plus/Plus
Query 1 TAAAGAAAACCGAGAATGTACCGGTTTATCTGCAGACCCGGTTGTTTTGTCCGGTTTGGT 60
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 43 TAAAGAAAACCGAGAATGTACCGGTTTATCTTCAGACCCGGTTG-TTTGTCCGGTTTGGT 101
Query 61 GAAATTAGAGCAGATCC-TTTTATCCAGAAACT-GTG--TGAGAGAAGTAA--AGACGCA 114
|||||||| | | || |||||||||| |||| | | | | |||| || | | | |
Sbjct 102 AAAATTAGAACCTAACCTTTTTATCCAG-AACTGGAGACTTTG-GAAG-AACTATA-G-A 156
Query 115 AGAGTTGTTCTCTTCGTATCG-------T--TCATGGAGACTATTATCAGGCTGTTTTGA 165
|| |||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 157 AGTGTTGTTCTCTTCGTATCGTCCTCAATCCTCATGGAGACTATTATCAGGCTGTTTT-- 214
Query 166 GAGCAAACGCTGTGATAAATAGGCTTTCTTCCTTGTTAGCAAGCACACACGAGTGACATG 225
||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||
Sbjct 215 GAGCAAACGCTGTGATAAAGAGGCTTTCTTTCTTGCTAGCAAGTACACACGAGTGACATG 274
Query 226 GCGGCATCTGCTTCAACCCGATTCCTTGTTCTGCTCAAAGAGTTTTCTGCCTTCAGAAAG 285
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 275 GCGGCATCAACTTCAACCCGATTCCTTGTTCTGCTCAAAGATTTTTCTGCCTTCAGAAAG 334
Query 286 ATATCTTGGACTTCTGCTGCAACTAA-TTTCTACCGCCAATCTCGTTTTTTATGCCATGT 344
||||| ||||||| |||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 335 ATATCATGGACTTGTGCTGCAACTAATTTTC-ACCGCCAATCTCGTTTTTTATGCCATGT 393
Query 345 TGCGAAAGAAGACGGGTCTCTTACTCTTGCAAGCCTTGATTTGGGGAACAAACCTCGTAA 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 394 TGCGAAAGAAGACGGGTCTCTTACTCTTGCAAGCCTTGATTTGGGGAACAAACCACGGAA 453
Query 405 ATTTGGGAAGAGTAAGGCGATGAAGCTTGAGGGAAGTTTTGTTACTGAAATGGGTCAAGG 464
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATTTGGGAAGGGTAAGGCGATGAAGCTTGAGGGAAGTTTTGTTACTGAAATGGGTCAAGG 513
Query 465 TAAGGTAAAAGCGGTAAAGAACGATAAAATGAAAGTAGTCAAGGAAAAGAAA-CCAGCTG 523
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 514 TAAGGTAAGAGCGGTAAAGAACGATAAAATGAAAGTTGTCAAGGAAAA-AAAGCCAGCTG 572
Query 524 AGATTGTGTCGCCTTTGTTTTCTGCAAAATCCTTTGAGGAGCTTGGCCTCCCAGATTCAT 583
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 573 AGATAGTGTCTCCTTTGTTTTCTGCAAAATCCTTTGAGGAGCTTGGCCTCCCGGATTCCT 632
Query 584 TGTTAGACAGCTTGGAAAGAGAAGGTTTCTCTGTTCCAACAGATGTCCAATCCGCAGCTG 643
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 633 TGTTAGACAGTTTGGAAAGAGAAGGTTTCTCTGTCCCAACAGATGTCCAATCAGCAGCTG 692
Query 644 TCCCGGCAATAATCAAAGGTCACGATGCAGTGATTCAGTCTTACACAGGATCTGGCAAAA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TCCCGGCAATAATCAAAGGTCACGATGCAGTGATTCAGTCTTACACAGGATCTGGCAAAA 752
Query 704 CCTTAGCTTATCTACTTCCTATATTATCCGAAATTGGTCCTCTAGCAGAAAAATCTAGAA 763
| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 753 CATTAGCTTATCTGCTTCCAATATTGTCCGAAATTGGTCCTCTAGCAGAAAAATCTAGAA 812
Query 764 GCTCGCACAGTGAAAATGATAAGAGGACAGATATTCAGGCAATGATCGTAGCTCCATCAA 823
| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 813 GTTCGCACAGTGAAAATGATAAGAGGACTGAGATTCAGGCAATGATCGTGGCTCCATCAA 872
Query 824 GAGAACTCGGTATGCAGATAGTAAGAGAGGTAGAGAAACTGCTCGGACCTGTTCACCGTA 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GAGAACTCGGTATGCAGATAGTAAGAGAGGTAGAGAAACTGCTCGGACCTGTTCACCGTA 932
Query 884 GAATGGTTCAGCAGTTGGTTGGAGGTGCGAACCGAATGAGGCAAGAAGAGGCCCTTAAGA 943
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 933 GAATGGTTCAGCAGTTGGTAGGAGGTGCAAACCGAATGAGGCAAGAAGAGGCCCTTAAGA 992
Query 944 AAAATAAACCTGCAATTGTTGTTGGCACTCCCGGGAGAATTGCAGAGATAAGCAAAAGTG 1003
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 993 AAAATAAACCTGCAATTGTTGTTGGCACTCCCGGGAGAATTGCAGAGATAAGCAAAGGTG 1052
Query 1004 GGAAATTGCACACTCATGGTTGTAGATTCTTGGTGCTAGATGAAGTCGATGAGCTTTTAT 1063
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1053 GAAAATTGCACACTCATGGGTGTAGATTCTTGGTGCTAGACGAAGTCGATGAGCTTTTAT 1112
Query 1064 CGTTTAATTTCCGAGAAGATATCCATCGAATACTTGAACATGTAGGAAAGAGATCTGGGG 1123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1113 CGTTTAATTTCCGAGAAGATATCCATCGAATACTAGAACATGTAGGAAAGAGATCTGGGG 1172
Query 1124 CTGGTCCTAAAGGGGAAGTGGATGAACGTGCTAACCGGCAGACAATTCTAGTCTCTGCAA 1183
||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 1173 CTGGTCCTAAAGGAGAAGTCGATGAACGGGCTAACCGGCAGACCATTCTAGTCTCTGCAA 1232
Query 1184 CTGTGCCATTCTCTGTTATCCGAGCAGCTAAGAGCTGGAGTCACGAGCCCGTTCTTGTCC 1243
||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1233 CTGTGCCATTCTCGGTTATCCGAGCAGCTAAAAGCTGGAGTCACGAGCCGGTTCTTGTCC 1292
Query 1244 AAGCCAACAAAGTCACGCCTCTTGATACCGTTCAACCATCTGCACCAGTAATAAGCTTAA 1303
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1293 AAGCCAACAAAGTCACTCCTCTTGATACCGTTCAACCATCTGCACCGGTAATGAGCTTGA 1352
Query 1304 CTCCCACAACTTCTGAGGCTAATGGCCAGATTCAGACTACTATTCAGAGCTTACCTCCAG 1363
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1353 CTCCCACAACTTCTGAAGCTGATGGCCAGATTCAGACTACTATTCAGAGCTTACCTCCAG 1412
Query 1364 CTTTAAAACACTATTACTGCATCTCAAAACATCAACACAAAGTCGACACGTTAAGGAGAT 1423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1413 CTTTAAAACACTATTACTGCATCTCAAAGCATCAACACAAAGTCGACACGTTAAGGAGAT 1472
Query 1424 GCGTTCACGCCCTCGACGCCCAATCGGTTATAGCTTTCATGAATCACTCAAGGCAGCTCA 1483
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1473 GCGTTCACGCCCTCGATGCCCAATCGGTTATAGCTTTCATGAACCACTCAAGGCAGCTCA 1532
Query 1484 AAGACGTGGTCTACAAACTCGAAGCTCGTGGTATGAATTCAGCGGAGATGCACGGAGATC 1543
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1533 AAGATGTGGTCTACAAACTCGAAGCTCGTGGTATGAATTCAGCTGAGATGCACGGAGATC 1592
Query 1544 TCGGGAAGCTAGGGAGATCAACAGTTCTAAAGAAGTTCAAGAACGGGGAAATCAAGGTGC 1603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1593 TCGGGAAGCTAGGGAGATCAACAGTTCTAAAGAAGTTCAAGAACGGGGAAATCAAGGTAC 1652
Query 1604 TCGTGACTAACGAGCTCTCTGCTCGGGGTCTTGATGTTGCAGAATGTGATCTGGTGGTGA 1663
| ||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1653 TTGTGACAAACGAGCTCTCTGCCCGGGGTCTGGATGTTGCGGAATGTGATCTGGTGGTGA 1712
Query 1664 ATCTTGAGCTTCCAACTGATGCGGTTCACTATGCTCATCGAGCTGGGAGAACAGGGAGGC 1723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 ATCTTGAGCTTCCAACTGATGCGGTTCACTATGCTCATCGAGCTGGGAGAACAGGGAGGC 1772
Query 1724 TGGGAAGGAAAGGGACGGTGGTAACAGTGTGTGAGGAATCACAAGTGTTCATAGTGAAGA 1783
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1773 TGGGAAGGAAAGGGACGGTGGTAACAGTGTGCGAGGAATCACAAGTGTTTATAGTGAAGA 1832
Query 1784 AGATGGAGAAGCAGCTTGGTTTGCCTTTCTTGTATTGTGAGTTTGTTGATGGAGAGCTTG 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1833 AGATGGAGAAGCAGCTTGGTTTGCCTTTCTTGTATTGTGAGTTTGTTGATGGAGAGCTTG 1892
Query 1844 TTGTCACTGAGGAAGATAAAGCTATTATAAGGTGAAGATCTAAAGATGTAATTTTCAGAT 1903
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1893 TTGTCACTGAGGAAGATAAAGCTATTATAAGGTGAAAATCTAAAGATGTAATTTTCAGAT 1952
Query 1904 ACTATTATTACTAATTTAAA-TTCAGAGTTTTGTCCCTTTTTCATATATATCATAAACAT 1962
||||||||||||| || ||| |||||||| ||||||||||||| ||||||| |||||||
Sbjct 1953 ACTATTATTACTA-TTGAAAATTCAGAGTCTTGTCCCTTTTTCTTATATATTGTAAACAT 2011
Query 1963 ATTTGTACTAGACGAAGAACAACTTAAACCAGTGTTGTTGAATTTGCTCTAGTTTTGACC 2022
|||| ||| |||||||||||| || |||||||||| | ||||| ||| ||||||||||
Sbjct 2012 ATTTTTACCAGACGAAGAACATCTAAAACCAGTGTCG---AATTTACTCCAGTTTTGACC 2068
Query 2023 G 2023
|
Sbjct 2069 G 2069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5