BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471431
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galac... 2287 0.0
AT1G63180.1 | Symbols: UGE3 | UDP-D-glucose/UDP-D-galactose 4-e... 1206 0.0
> AT1G12780.1 | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galactose
4-epimerase 1 | chr1:4355926-4358328 REVERSE LENGTH=1462
Length=1462
Score = 2287 bits (1238), Expect = 0.0
Identities = 1373/1435 (96%), Gaps = 22/1435 (2%)
Strand=Plus/Plus
Query 1 CCACTCtttttttCTATTTTTCGCTTTGCGTGCCTTCTTATCAACTTGTAAACAAAGCTA 60
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCACTCATTTTTCCTATTTTTCGCTTTGCGTGCCTTCTTATCAACTTGTAAACAAAGCTA 60
Query 61 CAAATATATCAATAAATAAGGACCCAACtcttcttc--tt--t-ctatcaatcttcttca 115
| || ||||| |||||||||||||||||||| ||| || | | ||||||||||||||
Sbjct 61 C-AA-ATATCTTTAAATAAGGACCCAACTCTTTTTCAATTCCTCCCATCAATCTTCTTCA 118
Query 116 --t-ttcttctG-T--TGGTGGTGATTTAG-TTTAAAAGAATCGATTTTGCGAAGTGGGT 168
| |||||||| | |||||||||| ||| ||| |||||||||||||||| ||||||||
Sbjct 119 TTTGTTCTTCTGTTGGTGGTGGTGATCTAGTTTTCAAAGAATCGATTTTGCCAAGTGGGT 178
Query 169 TC-TCTTGATAAATCTTTCTTCTTCTTTGAAATGGGTTCTTCTGTGGAGCAGAACATTCT 227
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTTCTTGAT-AACCTTTCTTCTTCTTTGAAATGGGTTCTTCTGTGGAGCAGAACATTCT 237
Query 228 TGTTACTGGTGGTGCTGGATTTATCGGCACGCATACTGTTGTTCAACTTCTGAAAGATGG 287
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 238 TGTTACTGGTGGTGCTGGCTTTATCGGGACGCATACTGTTGTTCAACTTCTCAAAGATGG 297
Query 288 TTTTAAGGTTTCGATCATCGATAATCTTGATAACTCTGTTATCGAAGCTGTCGATAGAGT 347
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 298 TTTTAAGGTTTCGATCATCGATAATTTTGATAACTCTGTTATCGAAGCTGTTGATAGAGT 357
Query 348 TAGGGAGCTTGTTGGTCCTGATCTCTCCAAGAAGCTCGACTTCAATCTGGGTGATCTAAG 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TAGGGAGCTTGTTGGTCCTGATCTCTCCAAGAAGCTCGACTTCAATCTGGGTGATCTAAG 417
Query 408 AAACAAAGGGGACATTGAGAAACTCTTCTCCAAGCAGAGATTTGATGCTGTGATTCATTT 467
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 AAACAAAGGGGACATTGAGAAACTATTCTCCAAGCAGAGATTTGATGCTGTGATTCATTT 477
Query 468 TGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGGAAACCCTCGCCGCTACTTTGACAATAA 527
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TGCGGGTCTTAAAGCTGTGGGTGAGAGTGTTGAAAACCCTCGCCGCTACTTTGACAATAA 537
Query 528 CTTGGTTGGAACAATCAATCTGTATGAGACCATGGCAAAGTACAACTGCAAAAGGATGGT 587
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 538 CTTGGTTGGAACAATCAATCTATATGAGACCATGGCAAAGTACAACTGCAAAATGATGGT 597
Query 588 GTTTTCATCATCTGCAACTGTTTATGGACAACCTGAAACGATTCCATGCATGGAAGACTT 647
||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 GTTTTCATCTTCTGCCACTGTTTATGGACAACCTGAAAAGATTCCATGCATGGAAGACTT 657
Query 648 TGAATTAAAGGCTATGAATCCTTATGGTCGTACTAAGCTCTTTCTTGAAGAAATAGCTAG 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGAATTAAAGGCTATGAATCCTTATGGTCGTACTAAGCTCTTTCTTGAAGAAATAGCTAG 717
Query 708 AGATATTCAAAGGGCAGAACCGGAATGGAGAATTGTTCTGCTGAGGTACTTCAATCCTGT 767
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 AGATATTCAAAAGGCAGAACCGGAATGGAGAATTATTCTGCTGAGGTACTTCAATCCTGT 777
Query 768 AGGAGCACATGAGAGTGGCAGTATTGGTGAGGATCCAAAAGGCATCCCCAATAATCTCAT 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 778 AGGAGCACATGAGAGTGGCAGTATTGGTGAGGATCCAAAAGGCATCCCCAATAACCTCAT 837
Query 828 GCCTTACATCCAACAAGTGGCCGTTGGACGTTTACCAGAACTCAATGTCTATGGACATGA 887
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 GCCTTACATCCAACAAGTGGCCGTTGGACGTTTACCGGAACTCAATGTCTATGGACATGA 897
Query 888 CTATCCCACCAAGGATGGTAGTGCGGTAAGAGACTACATCCATGTGATGGATTTAGCGGA 947
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 CTATCCCACCGAGGATGGTAGTGCGGTAAGAGACTACATCCATGTGATGGATTTAGCAGA 957
Query 948 TGGCCATATCGCTGCGCTCAGGAAGCTATTTGCTGATCCAAAGATTGGTTGTACTGCTTA 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGGCCATATCGCTGCGCTCAGGAAGCTATTTGCTGATCCAAAGATTGGTTGTACTGCTTA 1017
Query 1008 CAATCTAGGCACTGGTCAAGGAACGTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGC 1067
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAATCTAGGGACTGGTCAAGGAACGTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGC 1077
Query 1068 TTCCGGCAAGAAAATCCCGATCAAGCTCTGTCCGAGAAGGTCAGGAGATGCAACAGCAGT 1127
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTCCGGCAAGAAAATCCCGATTAAGCTCTGTCCGAGAAGGTCAGGAGATGCAACAGCAGT 1137
Query 1128 TTATGCTTCAACAGAGAAGGCTGAGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTATGCTTCAACAGAGAAGGCTGAGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGA 1197
Query 1188 TGAGATGTGCAGAGATCAGTGGAATTGGGCAAACAACAATCCATGGGGTTACCAGAAGAA 1247
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1198 TGAGATGTGCAGAGATCAGTGGAAATGGGCAAACAATAATCCATGGGGTTACCAGAATAA 1257
Query 1248 GCTTTGAATTTACTTCCtttttttttGGAGTTGCCATTTCTGATTACTCAAATCTAAAAG 1307
|||||||||||||||| |||| ||| |||||| |||||||| ||||||||||||||||||
Sbjct 1258 GCTTTGAATTTACTTC-TTTTGTTT-GGAGTTACCATTTCTAATTACTCAAATCTAAAAG 1315
Query 1308 AAAGAA-T-TA--TACATATGATGATATAGTTGTGCTTTATATTCCACATGTATCGAACT 1363
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAAGAAATATACATACATATGATGATATAGTTGTGCTTTATATTCCACATGTATCGAACT 1375
Query 1364 GGTCTCTTACTTTGATGAATAAAATGGAAAGTTGATTTTATTGAATTTTCAGTTT 1418
| |||||||||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1376 GATCTCTTACTTCGATGAATAAAATGGAAAGTTGATTTGATTGAATTTTTAGTTT 1430
> AT1G63180.1 | Symbols: UGE3 | UDP-D-glucose/UDP-D-galactose 4-epimerase
3 | chr1:23427409-23429603 REVERSE LENGTH=1425
Length=1425
Score = 1206 bits (653), Expect = 0.0
Identities = 930/1065 (87%), Gaps = 14/1065 (1%)
Strand=Plus/Plus
Query 197 AAATGGGTTCTTCTGTGGAGCAGAACATTCTT-GTTACTGGTGGTGCTGGATTTATCGGC 255
||||||||||||||||||| ||||||||| || || ||||||||||||||||| || ||
Sbjct 218 AAATGGGTTCTTCTGTGGAACAGAACATT-TTGGTGACTGGTGGTGCTGGATTCATTGGA 276
Query 256 ACGCATACTGTTGTTCAACTTCTGAAAGATGGTTTTAAGGTTTCGATCATCGATAATCTT 315
|| |||||||||||||| ||| |||| | |||||||||||| ||||||| |||||||||
Sbjct 277 ACACATACTGTTGTTCAGCTTTTGAATCAGGGTTTTAAGGTTACGATCATTGATAATCTT 336
Query 316 GATAACTCTGTTATCGAAGCTG-TCGATAGAGTTAGGGAGCTTGTTGGTCCTGATCTCTC 374
||||||||||| | ||||||| || |||| |||||||| ||||||||||||||||||||
Sbjct 337 GATAACTCTGTCGTTGAAGCTGTTC-ATAGGGTTAGGGAACTTGTTGGTCCTGATCTCTC 395
Query 375 CAAGAAGCTCGACTTCAATCTGGGTGATCTAAGAAACAAAGGGGACATTGAGAAACTCTT 434
| ||||| || ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 396 TACCAAGCTTGAATTCAATCTGGGTGATCTAAGAAACAAAGGAGATATTGAGAAACTCTT 455
Query 435 CTCCAAGCAGAGATTTGATGCTGTGATTCATTTTGCGGGTCTTAAAGCTGTGGGTGAGAG 494
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 456 TTCCAATCAGAGATTTGATGCTGTGATTCACTTTGCTGGTCTTAAAGCTGTGGGAGAAAG 515
Query 495 TGTTGGAAACCCTCGCCGCTACTTTGACAATAACTTGGTTGGAACAATCAATCTGTATGA 554
||||||||||||||| || |||||||| |||||||| |||||||| |||||||| |||||
Sbjct 516 TGTTGGAAACCCTCGTCGTTACTTTGATAATAACTTAGTTGGAACTATCAATCTATATGA 575
Query 555 GACCATGGCAAAGTACAACTGCAAAAGGATGGTGTTTTCATCATCTGCAACTGTTTATGG 614
|||||||||||| ||||||||||||| |||||||||||| || |||||||| ||||||||
Sbjct 576 GACCATGGCAAAATACAACTGCAAAATGATGGTGTTTTCGTCGTCTGCAACAGTTTATGG 635
Query 615 ACAACCTGAAACGA-TTCCATGCATGGAAGACTTTGAATTAAAGGCTATGAATCCTTATG 673
|||||||||| | | ||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 636 TCAACCTGAAA-TAGTCCCATGTGTGGAAGACTTTGAGTTACAGGCTATGAATCCTTATG 694
Query 674 GTCGTACTAAGCTCTTTCTTGAAGAAATAGCTAGAGATATTCAAAGG-GCAGAACCGGAA 732
||||||||||||| ||||||||||| ||||||||||| ||||| | || ||||| |||
Sbjct 695 GTCGTACTAAGCTGTTTCTTGAAGAGATAGCTAGAGACATTCAC-GCTGCGGAACCAGAA 753
Query 733 TGGA-GAATTGTTCTGCTGAGGTACTTCAATCCTGTAGGAGCACATGAGAGTGGCAGTAT 791
|||| || | |||| ||||||||||||||||| || ||||| || |||||||| || ||
Sbjct 754 TGGAAGA-TAATTCTTCTGAGGTACTTCAATCCGGTTGGAGCTCACGAGAGTGGAAGAAT 812
Query 792 TGGTGAGGATCCAAAAGGCATCCCCAATAATCTCATGCCTTACATCCAACAAGTGGCCGT 851
||| || |||||||| ||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 813 TGGAGAAGATCCAAAGGGCATACCGAATAATCTCATGCCTTATATCCAACAAGTGGCGGT 872
Query 852 TGGACGTTTACCAGAACTCAATGTCTATGGACATGACTATCCCACCAAGGATGGTAGTGC 911
|||| | ||||| ||||||||||| | ||||||||| ||||| |||| ||||||||| ||
Sbjct 873 TGGAAGATTACCTGAACTCAATGTATTTGGACATGATTATCCTACCATGGATGGTAGCGC 932
Query 912 GGTAAGAGACTACATCCATGTGATGGATTTAGCGGATGGCCATATCGCTGCGCTCAGGAA 971
||| ||||||||||||||||| ||||||||||| ||||||||| | |||||| | | ||
Sbjct 933 GGTTAGAGACTACATCCATGTAATGGATTTAGCAGATGGCCATGTGGCTGCGTTAAACAA 992
Query 972 GCTATTTGCTGA-TCCAAAGATTGGTTGTACTGCTTACAATCTAGGCACTGGTCAAGGAA 1030
| ||| | || || ||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 993 ATTGTTTTCAGACTC-AAAGATTGGCTGTACTGCTTATAATCTTGGCACTGGTCAAGGAA 1051
Query 1031 CGTCTGTGTTAGAAATGGTTGCAGCTTTTGAAAAAGCTTCCGGCAAGAAAATCCCGATCA 1090
| ||||| |||||||||||| | |||||||||||||||| ||||||||||| || ||||
Sbjct 1052 CTTCTGTCTTAGAAATGGTTTCTTCTTTTGAAAAAGCTTCTGGCAAGAAAATACCTATCA 1111
Query 1091 AGCTCTGTCCGAGAAG-GTCAGGAGATGCAACAGCAGTTTATGCTTCAACAGAGAAGGCT 1149
|||| ||||| ||||| | | |||||||||||||| |||||||||||||| |||| |||
Sbjct 1112 AGCTATGTCCAAGAAGAG-CTGGAGATGCAACAGCTGTTTATGCTTCAACTCAGAAAGCT 1170
Query 1150 GAGAAAGAACTTGGCTGGAAGGCAAAATATGGAGTGGATGAGATGTGCAGAGATCAGTGG 1209
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1171 GAGAAGGAACTTGGCTGGAAGGCAAAATATGGAGTTGATGAGATGTGCAGAGATCAATGG 1230
Query 1210 AATTGGGCAAACAACAATCCATGGGGTTACCAGAAGAAGCTTTGA 1254
|| |||||||| || ||||||||||||| ||||||||||| ||||
Sbjct 1231 AACTGGGCAAATAAGAATCCATGGGGTTTCCAGAAGAAGCCTTGA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5