BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471432
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12790.1 | Symbols: | CONTAINS InterPro DOMAIN/s: RuvA doma... 1635 0.0
> AT1G12790.1 | Symbols: | CONTAINS InterPro DOMAIN/s: RuvA domain
2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins
in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0;
Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:4359151-4361272 REVERSE LENGTH=1172
Length=1172
Score = 1635 bits (885), Expect = 0.0
Identities = 1060/1141 (93%), Gaps = 26/1141 (2%)
Strand=Plus/Plus
Query 2 CATCCGCCAATATTTTCGAATTTCAAAAACTCTCGGAGGTTCGTCGATGGCGACGGCGGG 61
|||||||||| ||||||||||||| | |||||| ||||||||||| ||||||||||||||
Sbjct 5 CATCCGCCAAGATTTTCGAATTTCTATAACTCTAGGAGGTTCGTCAATGGCGACGGCGGG 64
Query 62 ATCAAGCTACAGTGTCTCAACAGATCATCAAGTTCCGTCATCTCTCGTGAATCTAGGAAA 121
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 65 ATCAAGCTACAGTGTCTCAACAGATCATCAAGTTTCGTCACCTCTCGTGAATCTAGGAAA 124
Query 122 TGGTGCTGGTGTTTGTATAATGAGCAATGCATGGAAAGATGAACAAGAACCTTCACTTAT 181
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 125 TGTTGCTGGTGTTTGTATAATGAGCAATGCATGGAAAGTTGAACAAGAACCTTCACTGAT 184
Query 182 CAGTTTCATTTCTGCCTTTCTTACCGCAAACTCTTTCCGGCTAAACTTTGTCTCAATCCC 241
|| |||||| ||||| ||||||| ||||||||||||||| || ||||||||||| |||||
Sbjct 185 CAATTTCATATCTGCGTTTCTTAGCGCAAACTCTTTCCGCCTTAACTTTGTCTCTATCCC 244
Query 242 CCCGGATCTGATCTTCAATTGTGGAGGTGTTTCTATTGCTTTTGTTTTTGTTACTAAATG 301
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 245 CCCTGATCTCATCTTCAATTGTGGAGGTGTTTCTATTGCTTTTGTTTTTGTGACTAAATG 304
Query 302 GGATTGTTCCACTGTTGCTTCCATCTTCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGC 361
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 GGATTTTTCCAATGTTGCTTCCATCTTCAGCAGAGTAAAGAGGCTGAAAGGGCAATTTGC 364
Query 362 GCAACTTTATGTTGTTGTC-ACACTTTCAACTAAAGCGCAGAGTGATTCTTTCATGCGAT 420
||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||||||
Sbjct 365 GCAACTTTATGTTGTTG-CTACACTTTCAACTAAAGAGCAGAGTGATTCTTTTATGCGAT 423
Query 421 CTTACTTCCAATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCATTGATGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 424 CTTACTTCCAATATGAGATGGAGTTTGGGAAACCTGCGTTTGTACAAGTCACTGATGCTG 483
Query 481 AGATGGGATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTGTGCAAGCAACAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 AGATGGGATTTGAGAAGATTGTTAAGATTGCTCACTCTCGTGGAGTGTGCAAGCAACAGA 543
Query 541 AGGTGGCATCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCA 600
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AGGTGGCCTCTAAGCTCAAGGTTGAGAGAAAGCGAACTGTGCAGGATACAAACATCTTCA 603
Query 601 TCAGATTTGTCACATCCATACCCAACATTAACAAACATGATGCAAACACGCTATACCAAG 660
||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
Sbjct 604 TCAGATTTGTCACATCCATACCCAATATTAACAAACATGATGCGAACACGCTGTACCAGG 663
Query 661 CTATTGGTTCAATCGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAAACACAG 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTATTGGTTCAATTGAAGCAATCGCTAAAGCATCCAAAGAAGACATTTTAGCAAACACAG 723
Query 721 ATCTCTCTTCTGAAAAGGCTGAGACACTCACCAGGTTCTTCCAAGATCCTGAGTTCTACC 780
||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 724 ATCTCTCTTCTAAAAAGGCTGATACACTCACCAGGTTTTTCCAAGATCCTGAGTTCTACC 783
Query 781 TCAGTCCCAAATTCAACTGATGACTGCAGAACAAAGTTTTTCTAAAGGTAACACTCAAAG 840
|||||||||||||||||||| |||||||||| | |||||||||||||||| |||||||||
Sbjct 784 TCAGTCCCAAATTCAACTGACGACTGCAGAA-ATAGTTTTTCTAAAGGTACCACTCAAAG 842
Query 841 ACTTTTCCTAGTCCTTTGCTATGGCTACAA---TACA-TACA--C-C-TATAGGAGCCAG 892
||||||| |||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct 843 ACTTTTCGTAGTCCTTTGCTATGGCTACAAGACTACAATACATACACCTATAGGAGCCAG 902
Query 893 TACCGGGTAAGTAAAATGACTCACTTCTTTACCTTTTTGCTAGCTCTGTCTGACTA-TCA 951
|||||||||||||||||| ||||||| |||| |||| ||||||||||||||| || | |
Sbjct 903 TACCGGGTAAGTAAAATGGCTCACTTTTTTATCTTT--GCTAGCTCTGTCTGAATACT-A 959
Query 952 GTACTTTTCTTACATTCC-TTCCT-TAAAATGATGTTTA-CTATTTGAACTT-AATCAAT 1007
|||||||| |||||| || ||||| | ||| | |||||| | || ||||||| |||||||
Sbjct 960 GTACTTTTATTACAT-CCGTTCCTGTTAAA-G-TGTTTAGC-ATCTGAACTTTAATCAAT 1015
Query 1008 AAAGATCTGTACCAAAAAATTT---GATGTTTGCAGTAACACCAAACTAAATCATGAAAA 1064
||||||| ||||||| | ||| ||||||||||||||||||||||| ||| ||||||
Sbjct 1016 AAAGATCGGTACCAAGACTTTTTTTGATGTTTGCAGTAACACCAAACTGCATCGTGAAAA 1075
Query 1065 CGTTTGGTAGATTGATTGATAAGTTTGATAGTTAAGCACAATAAATGACCGCACTTGTTT 1124
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1076 CGTTTGGTAGATTGATTGATAAGTTTGAGGGTTAAGCACAATAAATGACCACACTTGTTT 1135
Query 1125 T 1125
|
Sbjct 1136 T 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5