BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471434

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12805.1 | Symbols:  | nucleotide binding | chr1:4366597-436...   436    5e-122


> AT1G12805.1 | Symbols:  | nucleotide binding | chr1:4366597-4367119 
FORWARD LENGTH=523
Length=523

 Score =  436 bits (236),  Expect = 5e-122
 Identities = 326/367 (89%), Gaps = 15/367 (4%)
 Strand=Plus/Plus

Query  32   TTTATTCAAATGGATGTCTTTATATCGGAAGAGTATGTCAACCGCCGGAGAATGGAGAAA  91
            |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  124  TTTA-TCAAATGGATGTCTTTATATCGGAAGAGTATATCAACCGCCGGAGATTGGAGAAA  182

Query  92   AAAGCTGCCGCCGTTGCCGGAAAAAGCATGAGGTTAGGCTCTGCTTCAAGCAAGAGACCA  151
            ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct  183  AAAGCTGCCACCGTTGCCGGAAAAAGCATGAGGTTTGGCTCAGCTTCAAGCAAGACACCA  242

Query  152  GAGAAGAGAAATAGTTATCCTTGTATGTCGGAATCTCCGCCGGATAATGAGTTCCGGGTC  211
            ||||||||||||||||| ||| | || |||||||||||||| ||||||||||||||||||
Sbjct  243  GAGAAGAGAAATAGTTACCCTCGGATATCGGAATCTCCGCCAGATAATGAGTTCCGGGTC  302

Query  212  TCCGGCGGGGGTGTTTATGAGAG---T---TTTGTGTTCCACTGCTTCTCGCCGT--AAA  263
             | ||||||||||||||||| ||   |   |||||||||||||||||||||||||  |||
Sbjct  303  ACTGGCGGGGGTGTTTATGATAGCTTTGCCTTTGTGTTCCACTGCTTCTCGCCGTAAAAA  362

Query  264  AAACAAAGCGTTTGTGTTTAGCGATCAAAATGCATGCGCAGTAGTGTATGCATGGGCTTT  323
            |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||   |
Sbjct  363  AAACAAAGCGTTTGTGTTTAGCGATCAAAATGCATGCGCAATAGTATATGCATGGGAACT  422

Query  324  TATATATTAGTTGTGGCTAAAGGGTTTTC-AACATTTACTT-AAAAAATAATTTTTCTTA  381
            | ||| | |||||| |||   |  ||||| ||||||||||| ||||||||||| ||||||
Sbjct  423  T-TAT-T-AGTTGTAGCTCTCGT-TTTTCTAACATTTACTTGAAAAAATAATTCTTCTTA  478

Query  382  ACATTGT  388
            ||| |||
Sbjct  479  ACACTGT  485



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5