BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471435
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12810.2 | Symbols: | proline-rich family protein | chr1:43... 510 6e-144
> AT1G12810.2 | Symbols: | proline-rich family protein | chr1:4367256-4368804
FORWARD LENGTH=849
Length=849
Score = 510 bits (276), Expect = 6e-144
Identities = 333/359 (93%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 4 aaaaaaaaaaTGAGCTACGACAAAGTCCCACCGGAATCATATCCTCCTCCAGGATACCAA 63
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 68 AAAAAAAAAATGAGCTACGACAGAGTCCCACCGGAATCGTATCCTCCTCCAGGATACCAA 127
Query 64 TCTCACTATCCACCTCCGGGTTATCCATCAGCACCGCCGCCGCCGGGATATCCTTCTCCT 123
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 128 TCTCACTATCCACCTCCGGGTTATCCATCAGCACCGCCACCGCCGGGATATCCTTCTCCT 187
Query 124 CCATCGCATCACGAAGGATATCCTCCGCCTCAGCCTCACGGAGGATATCAACCGTATCCA 183
|| ||||||||||||||||||||||| ||||||||| |||||||||||| | | |||
Sbjct 188 CCGTCGCATCACGAAGGATATCCTCCACCTCAGCCTTACGGAGGATATC--C---A-CCA 241
Query 184 CCACCGTCTTCACGTCCTTACGAAGGCGGTTATCAAGGTTACTTCGCCGGAGGAGGTTAT 243
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 242 CC---GTCTTCACGTCCTTACGAAGGCGGTTATCAAGGCTACTTCGCCGGAGGAGGTTAT 298
Query 244 CCTCATCAACATCACGGACCACCGCCTCCTCCTCCGCCGCAAAATTACAATCACTGTCAT 303
|||||||| |||||||||||||| |||||||||||||||||||||||| | ||||| |||
Sbjct 299 CCTCATCAGCATCACGGACCACCACCTCCTCCTCCGCCGCAAAATTACGACCACTGCCAT 358
Query 304 CACGATCATTACCATAACCAAGGTTCTGACTCTGGTTGCTTCTCTTTCGTCCGTGGCTG 362
|| |||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 359 CATGATCATCACCATTACCAAGATTCTGACTCTGGTTGCTTCTCTTTCATCCGTGGCTG 417
Score = 405 bits (219), Expect = 3e-112
Identities = 307/346 (89%), Gaps = 19/346 (5%)
Strand=Plus/Plus
Query 363 TCTTGCTGCTCTCTGCTGTTGCTGTTTGTTGGAGGAATGCTGCTTCTAAGAATG-C-CC- 419
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 517 TCTTGCTGCTCTTTGCTGTTGCTGTTTGTTGGAGGAATGCTGCTTCTGAGAATGCCGCCA 576
Query 420 GTCTCTGCGGATCTTGTCATTTACTGTCAGCATTATGTGTCTAATCGAAGACATATGCCA 479
||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GTCTCTGTGGATCTCGTCGTTTACTGTCAGCATTATGTGTCTAATCGAAGACATATGCCA 636
Query 480 TAACTCTCTATGTCTTATGTACTATCTATCGTGTTTAATTGTCTGTTGATGTTCACCTCT 539
|||| ||||||||||| ||||||||| | |||| ||| ||||||| ||||| ||||||
Sbjct 637 TAACACTCTATGTCTTGTGTACTATCG-T-GTGTC-AAT-GTCTGTTAATGTTTACCTCT 692
Query 540 TTGTTTGAGAGTGCACTCATCCAGAGCATGGATTTGACAAGTAGGTTTCTTGTGGATGTT 599
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 693 TTGTTTGAGAGTGCACTCATCCAGAGCATGGATTAGACAAGTAGGTTTCTTGTGGATGT- 751
Query 600 C-TCTGTAATTTTTATGTATTATTTGGAAAACATGTTTGTTATTCTACCCAAATTT-TAG 657
| | |||||||| |||||||||||||||| || ||| |||| |||| |||||| | |
Sbjct 752 CAT-TGTAATTT----GTATTATTTGGAAAACGTGATTGGTATTTTACCTAAATTTAT-G 805
Query 658 TTCTTTCAAAGGCTGAATTATGGT-ATAATAAAATGCAACATTTGT 702
|| || ||| |||||||||| ||| |||||||||||| ||||||||
Sbjct 806 TT-TT-CAATGGCTGAATTACGGTGATAATAAAATGCGACATTTGT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5