BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471437
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1134 0.0
> AT1G12830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
39778 Blast hits to 22088 proteins in 1060 species: Archae -
152; Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants
- 2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI
BLink). | chr1:4374250-4375170 REVERSE LENGTH=921
Length=921
Score = 1134 bits (614), Expect = 0.0
Identities = 800/885 (90%), Gaps = 32/885 (4%)
Strand=Plus/Plus
Query 1 TCAAAGCCCTAACTCTGAATCGTCTTCCTCAAACC--AATCGCGAATTCTCTGAAGTAAG 58
|||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||
Sbjct 44 TCAAAGCCCTAACTCTGAATCGTCGTCCTCAAACCAAAATCGCG-AGTCTCTGAAGTAAG 102
Query 59 AAGATTGATTCATCTATGGCGGATGTTGAGAATCAACCGGATTCTTCGTTTCCGGTGAAG 118
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 103 AAGATTGATTCATCTATGGCGGATGTTGAGAATCAACAGGATTCTTCGTTTCCTGTGAAG 162
Query 119 CGGAAATCTGATCTGTTTTGCCAAGAGCAGGATAATGTGGCAAACAAGGCTCAGAAGCTT 178
|| ||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 163 CGAAAATCGGATCTGTTTTGTCAAGACCAGGATAATGTGACAAACAAGGCTCAGAAGCTT 222
Query 179 AATCCTTCATCGAATTCTGTTGAGTCTGAGTCCAAAGACGGAGAAATTAATGGAACTGG- 237
|||||||||| |||||||| ||| |||||||||||||||||||||| |||||||| |||
Sbjct 223 AATCCTTCATTGAATTCTGCTGATTCTGAGTCCAAAGACGGAGAAACTAATGGAAGTGGC 282
Query 238 C--GTCGAGAATCTGAATTCTTCCACCGAGGAAAAGATTGGGGCAGAATCATCGGTTTTA 295
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 283 CAAATCGAGAATCTGAATTCTTCCACCGAGGAAACGATTGGAGCAGAATCATCGGTTTTA 342
Query 296 TCGGAGAAAGCAGCTGAAAAGGTTGAGAATGGCGTAATCGGCGATCTTGCAGCtgaagat 355
|||||||||||||||||| ||||||||| |||||||||||||||| ||| ||||| | |
Sbjct 343 TCGGAGAAAGCAGCTGAAGAGGTTGAGAGTGGCGTAATCGGCGATGTTGGAGCTG-A-A- 399
Query 356 gaggagcaagaagatg--g-agatgaagaagatgaagaggaagaagacgaggaagaagaa 412
||||||||||| |||| | ||||||||| || || || || ||||| || |||||||||
Sbjct 400 GAGGAGCAAGAGGATGAAGAAGATGAAGAGGAAGACGACGAGGAAGAAGAAGAAGAAGAA 459
Query 413 gaagagGTTGATAGGAAAGGTAAAGGGATTTCTCGAGAGGACAAGGGAAAGGGAAAAATG 472
|||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 460 GAAGTTGTTGATAGGAAAGGTAAAGGGATTTCGCGAGAGGATAAGGGAAAGGGAAAAATG 519
Query 473 ATcgaagttgatgaaagtgatgacgaagacgaca--g-tgatgatgaagatgacgaaggt 529
|||||||| || ||||||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 520 ATCGAAGTGGAAGAAAGTGATGATGAAGACGACAGTGATGATGATGAAGATGACGAAGGT 579
Query 530 tttgatgaagacgacgAAAGCGATTTCTCCGATGATCCTTTGGCTGAGGTTGATTTGGAT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTTGATGAAGACGACGAAAGCGATTTCTCCGATGATCCTTTGGCTGAGGTTGATTTGGAT 639
Query 590 AATATCCTCCCGTCGAGGACTAGGAGACGATCGAGCCAGCCTGGAGTTTTCATCTCCAAT 649
|||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 640 AATATCCTTCCGTCGAGGACTAGGAGAAGATCGAGCCAGCCTGGAGTTTTCATCCCCAAT 699
Query 650 GAAATCAGTAACCGTGGTGTCAACGACGAGGATGATGATAGCAGTGAT-G--ATAG-T-- 703
||| |||||||||| ||||||||||||||||||||| ||||||||| | || | |
Sbjct 700 GAATTCAGTAACCGCCATGTCAACGACGAGGATGATGAAAGCAGTGATAGTGAT-GCTTA 758
Query 704 --GA--T--GCTTAAAAGAGGTTAGTGATTAAGAAAAATCAAGAAATTAGTTCCTTTGAT 757
|| | |||| ||||||||||||||||||| || | | ||| ||||||||||||||
Sbjct 759 AAGACCTTAGCTTGTAAGAGGTTAGTGATTAAGATAACTGA-GAA-TTAGTTCCTTTGAT 816
Query 758 TCTAAA-GAGAGTTTGTCTCTGTTCAGTGATTATTCGTTATATCTAATGATGTTTCAAAC 816
|||||| ||||||||||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 817 TCTAAAAGAGAGTTTGTCACTGTTCAGTGATTATTAGTTATATCTATTGATGTTTCAAAC 876
Query 817 GCTTGGACCAAAGTGGGTTATTATATATATCTATGATGTTCTTGC 861
||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 877 GCTTGGACCAAAGTGGGCT-TTATATATATCTATGATGTTCTTGC 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5