BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471438
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12840.1 | Symbols: DET3, ATVHA-C | vacuolar ATP synthase su... 2370 0.0
> AT1G12840.1 | Symbols: DET3, ATVHA-C | vacuolar ATP synthase
subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump
C subunit (DET3) | chr1:4375515-4378514 FORWARD LENGTH=1491
Length=1491
Score = 2370 bits (1283), Expect = 0.0
Identities = 1431/1499 (95%), Gaps = 23/1499 (2%)
Strand=Plus/Plus
Query 1 agagaagaagatttgattgaagtacagatccatcggagaagaagacagagagattgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AGAGAAGAAGATTTGATTGAAGTACAGATCCATCGGAGAAGAAGACAGAGAGATTGAAGA 66
Query 61 tCAATGACTTCGAGGTACTGGGTTGTTTCTCTTCCAGTGAAAGACTCTGCTTCTACGTTA 120
|||||||||||||| || ||||| || ||||||||||||||||||||||||||| |||||
Sbjct 67 TCAATGACTTCGAGATATTGGGTGGTGTCTCTTCCAGTGAAAGACTCTGCTTCTTCGTTA 126
Query 121 TGGAATCGATTACAGGAGCAGATCTCCAAGCATTCCTTTGATACTCCAGTTTATCGGTTT 180
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 127 TGGAATCGATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGGTTT 186
Query 181 AACATTCCTAATCTTCGTGTTGGAACTTTAGATTCTCTACTCGCTCTCGGCGATGATCTG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 187 AACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTG 246
Query 241 CTTAAGTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAAGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CTTAAGTCGAACAGCTTTGTGGAAGGAGTTTCGCAAAAGATCAGGAGACAGATCGAAGAA 306
Query 301 TTGGAGAGGATTTCTGGTGTTGAGAGCAACGCTCTAACAGTTGATGGAGTTCCTGTTGAT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 307 TTGGAGAGGATTTCTGGTGTTGAGAGCAACGCTCTTACAGTTGATGGAGTTCCTGTTGAT 366
Query 361 TCTTATCTCACCAGGTTTGTGTGGGATGAAGCTAAGTACCCAACGATGTCACCTCTGAAG 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 367 TCTTATCTCACCAGGTTTGTGTGGGATGAAGCTAAGTACCCAACAATGTCACCTCTGAAG 426
Query 421 GAGGTTGTTGACAATATTCAGTCTCAGGTTGCAAAGATTGAGGATGATCTCAAGGTTCGT 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 427 GAGGTTGTGGACAATATTCAGTCTCAGGTTGCAAAAATTGAGGATGATCTCAAGGTTCGT 486
Query 481 GTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTTGCTGAATATAACAATATCCGTGGTCAACTCAATGCCATTAACCGAAAGCAAAGTGGA 546
Query 541 AGCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGCGTCAGAA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 547 AGCTTAGCTGTTCGTGACCTCTCAAACTTGGTTAAGCCAGAAGATATTGTCGAGTCCGAA 606
Query 601 CATCTTGTGACTCTCCTTGCAGTTGTTCCAAAGTATTCCCAAAAAGACTGGCTGGCATGT 660
||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 607 CATCTCGTAACTCTCCTTGCAGTTGTTCCGAAGTATTCCCAAAAAGACTGGCTAGCATGT 666
Query 661 TATGAGACATTGACCGAATATGTGGTTCCTAGGTCCTCGAAGAAGTTGTTTGAGGATAAT 720
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 667 TATGAGACTTTGACCGATTATGTGGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAAT 726
Query 721 GAGTATGCTCTTTACACCGTCACTCTCTTTACTCGTGTTGCAGATAATTTCAGGATTAG- 779
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 727 GAGTATGCCCTTTACACCGTCACTCTCTTTACTCGTGTCGCAGATAATTTCAGGATT-GC 785
Query 780 TGCTCGTGAGAAGGGGTTCCAAGTCCGTGATTTTGAACATAGTGTTGAAGCACAAGAGAC 839
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 786 TGCTCGTGAGAAAGGATTCCAAGTCCGTGATTTTGAACAAAGTGTTGAAGCACAAGAGAC 845
Query 840 TCGTAAACAAGAGCTAGAAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTT 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TCGTAAACAAGAGCTAGCAAAGTTGGTTCAGGATCAGGAAAGTTTGAGAAGCTCTCTTTT 905
Query 900 GCAGTGGTGCTACACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTCTGTGCTGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GCAGTGGTGCTACACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCATTTCTGTGCTGT 965
Query 960 GCGTGTATTCGCTGAGAGCATTATGAGATATGGTTTACCTCCAGCGTTCTTGGCATGTGT 1019
|||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 966 GCGTACATTCGCTGAGAGCATTATGAGATACGGTTTACCTCCGGCGTTCTTGGCATGTGT 1025
Query 1020 CTTATCTCCGGCTGTGAAAAGTGAAAAGAAAGTACGCTCCATTCTTGAACGCATGTGTGA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1026 CTTATCTCCGGCTGTGAAAAGTGAAAAGAAAGTACGCTCCATTCTTGAACGCTTGTGTGA 1085
Query 1080 TTCTACCAACAGTTTGTACTGGAAAAGCGAGGAGGATGCAGGAGCTGGAGGAGCCATGGC 1139
||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1086 TTCTACCAACAGTTTATACTGGAAAAGCGAGGAGGATGCAGGAGC--------C-ATGGC 1136
Query 1140 TGGTTTAGCCGGTGACTCAGAGACACATCCTTATGTCTCCTTCACTATCAACCTTGCTTA 1199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGTTTAGCTGGTGACTCAGAGACACATCCTTATGTCTCCTTCACTATCAACCTTGCTTA 1196
Query 1200 AAA-TATTGATGAGAGATGCTTTTGATGCTACTTCTCCTC-GTCTCTGTCTTCATCTGTT 1257
||| ||| ||||||||||||||||||||| |||||||||| | ||| ||| ||||||||
Sbjct 1197 AAAATAT-GATGAGAGATGCTTTTGATGCCACTTCTCCTCTGG-TCT-TCT-CATCTGTT 1252
Query 1258 ATATTTGTTTGTGTTCTATAGATTTCACATTTATTTTTCGTAATATATTATGATTTTCA- 1316
||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1253 ATATTTGTTTGTGGTCTATAGATTTCACATTTATTTTTCGTAACATATTTTGATTTTCAT 1312
Query 1317 AAATAAGGTGGCACTCAAGAGAGATGTTGCTGTAATTTATATTTGGCCGGAGTCTTTTAG 1376
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1313 AAATAAGGTGGAACTCAAGAGAGATGTTGCTGTAATTT-TATTTGGCCGGAGTCTTTTAG 1371
Query 1377 ATTCCGGTGAGTTTCAGACACTTGTGGAAGACAAAAGG-TTATACAGTTGTTAAAGCCTT 1435
||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1372 ATTCCGGCGAGTTTCAGACACTTGTGGAAGACAGAAGGGTTATACAGTTGTTAAAGCCTT 1431
Query 1436 TTTGTCATTTTGTGACCTGGTTGATTTATCTATATCA-C--TCTGTTTCGTTTCTGTCT 1491
|||||||||||||||| |||||||||||| ||||||| | |||||||||||| |||||
Sbjct 1432 TTTGTCATTTTGTGACATGGTTGATTTATTTATATCATCACTCTGTTTCGTTTTTGTCT 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5