BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471441
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12880.1 | Symbols: atnudt12, NUDT12 | nudix hydrolase homol... 1295 0.0
AT3G26690.1 | Symbols: ATNUDT13, ATNUDX13, NUDX13 | nudix hydro... 525 3e-148
> AT1G12880.1 | Symbols: atnudt12, NUDT12 | nudix hydrolase homolog
12 | chr1:4389751-4391151 FORWARD LENGTH=1002
Length=1002
Score = 1295 bits (701), Expect = 0.0
Identities = 879/959 (92%), Gaps = 35/959 (4%)
Strand=Plus/Plus
Query 1 CTCGTTGGTACAACTCCTCATTCGTCTCCGCAAAAATAGCAAGTTCTTAAACAAGaaaaa 60
||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||
Sbjct 7 CTCGTTGGTACAACTCCTCATTCTTCTCCGCAAAAATAGCAAGTTATTTAAC------AA 60
Query 61 aaaaaaaaaCTCATATTAACGATTTTA-TTTCTCGTGAGTTTGAGAGATTCGTTAATTCT 119
| ||||||| |||||| |||||||||| ||| | |||| ||| ||||||||||||||||
Sbjct 61 ACAAAAAAATTCATATAAACGATTTTATTTTTTTGTGACTTT-TGAGATTCGTTAATTCT 119
Query 120 GGAAAGTTTGTTTATTTTCAAAAGAAGAAGA-AGA-T-G-GAT------TCGTC-ATG-- 166
||||| ||||||||||||||||| ||||| | || | | || | | | |||
Sbjct 120 GGAAAATTTGTTTATTTTCAAAACAAGAATATGGATTCGTCATAAAAGCTAGGCTATGAT 179
Query 167 -AA-A-G---C-T---AACAAGAACAGGGCTTTTCAAGAACGTAGCATTCTCTGTTTC-- 214
|| | | | | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CAACATGTTTCATACAAACAAGAACAGGGCTTTTCAAGAAAGTAGCATTCTCTGTTTCTG 239
Query 215 -TGTCTCAATCCCTTTTGA-tttttttGTGTTCGCAGATTCATCAAATGTCGGTTCTTTC 272
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 240 TTGTCTCAATCCCTTTTGATTTTTTTTGTGTTGGCAGATTCATCAAATGTCGGTTCTTTC 299
Query 273 TTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCCGTCTCGTTTCTGGATG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCCGTCTCGTTTCTGGATG 359
Query 333 TATTCCTTATAGGCTGATTAAAGCTGACGAAATTGAAGAAGACTCAAGTGTTGACTTTGT 392
||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||
Sbjct 360 CATTCCTTATAGGCTGATGAAAGCTGACGAAACTGAAGAAGACTCAGGTGTTGACTTTGT 419
Query 393 TAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTCATGATCTTGTCTTCCCAAA 452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTCATGATCTTGTCTTCCCAAA 479
Query 453 GGGAGGGTGGGAAGATGATGAGACTGTTCTTGAAGCTGCTTCTCGTGAAGCAATTGAAGA 512
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GGGAGGATGGGAAGATGATGAGACTGTTCTTGAAGCTGCTTCTCGTGAAGCCATTGAAGA 539
Query 513 AGCAGGTGTTAAAGGAATACTTAGAGAAGTTCCTTTAGGAGTTTGGGAATTTAGAAGCAA 572
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 AGCAGGAGTTAAAGGAATACTTAGAGAACTTCCTTTAGGAGTTTGGGAATTTAGAAGCAA 599
Query 573 AAGTAGCACAGTGGAGGATGAATGTTTAGGTGGATGCAAAGGATATATGTTTGCATTAGA 632
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 600 AAGTAGCACAGTGGAGGATGAATGTTTAGGTGGATGTAAAGGATATATGTTTGCATTAAA 659
Query 633 GGTTACCGAAGAACTCGAGGATTGGCCAGAGCGAAAGAACCGCCAGCGGAGATGGTTGAA 692
|||||||||||||||||||||||||||||||||||||| || | || ||||||||||
Sbjct 660 AGTTACCGAAGAACTCGAGGATTGGCCAGAGCGAAAGAATCGTGAACGAAGATGGTTGAC 719
Query 693 TGTTAAAGAAGCGTTGGAGCTTTGTCGGTATGAGTGGATGCAGAGAGCACTTGAAGAGTT 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTTAAAGAAGCGTTGGAGCTTTGTCGGTATGAGTGGATGCAGAGAGCACTTGAAGAGTT 779
Query 753 TTTGAGAGTAATGGAAGATGAAGGAAGATTGAGAACAGAGGAAGAGACAGTGCAGGATTC 812
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 780 TTTGAGAGTAATGGAAGATGAAAGAAGATTGAGAACAGAGGAAGAGACAGTGCATGATTC 839
Query 813 TTCAAAGCTAGAGGAGGAGTGTCAAATAGATCCTTGGTACTGTTTTGTAGTTAATTAGTT 872
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 840 TTCAAAGCTAGAGGAGGAGAGTCAAATAGATCCTTGGTACTGTTTTGTAGTTAACTAGTT 899
Query 873 TTTCATATTCTTTAGCTAATGTaaaaaaaTTGAAAACATGAGAAGTAAAGTGACTTCAA 931
||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||
Sbjct 900 TTTCATATTCTTTAGCTAACGTAAACAAATTGAAAAAATGAGAAGTAAAGTGACTGCAA 958
> AT3G26690.1 | Symbols: ATNUDT13, ATNUDX13, NUDX13 | nudix hydrolase
homolog 13 | chr3:9804253-9805715 REVERSE LENGTH=1027
Length=1027
Score = 525 bits (284), Expect = 3e-148
Identities = 456/536 (85%), Gaps = 23/536 (4%)
Strand=Plus/Plus
Query 257 AAATGTCGGTTCTTTCTTCTCGGACAGGACGAGATCGTCAACGTTACGACAACAACTTCC 316
|||||||| ||||||| | | ||||||||||| | ||||||||| |||||||||||||
Sbjct 252 AAATGTCGAATCTTTCTGCAAGAACAGGACGAGACCATCAACGTTATGACAACAACTTCC 311
Query 317 GTCTCGTTTCTGGATGTATTCCTTATAGGCTGATTAAAGCTGACGAAATTGAAGAAGACT 376
|||| ||||||||||| ||||| ||||||||| | ||| || | || ||||| ||||
Sbjct 312 GTCTTGTTTCTGGATGCATTCCGTATAGGCTGGTGAAA---GATG-AA--GAAGAGGACT 365
Query 377 ---CAAGTGTTGACTTTGTTAACAAACTTGAAGTTCTTATGGTTTCATCTCCTAATCGTC 433
||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 366 CAACAAGTGTTGACTTTGAAAACAAGCTTCAAGTTCTTATGATTTCATCTCCTAATCGTC 425
Query 434 ATGATCTTGTCTTCCCAAAGGGAGGGTGGGAAGATGATGAGACTGTTCTTGAAGCTGCTT 493
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 426 ACGATCTTGTCTTCCCAAAGGGAGGATGGGAAGATGATGAAACTGTTCTTGAAGCTGCTT 485
Query 494 CTCGTGAAGCAATTGAAGAAGCAGGTGTTAAAGGAATACTTAGAGAAGTTCCTTTAGGAG 553
|||||||||| || ||||||||||| |||||||||||||| ||||||| ||| |||||||
Sbjct 486 CTCGTGAAGCTATGGAAGAAGCAGGAGTTAAAGGAATACTAAGAGAAGATCCATTAGGAG 545
Query 554 TTTGGGAATTTAGAAGCAAAAGTAGCACAGTGGAGGATGAATG-T--TTAGGTGG---AT 607
|||||||||||||||| || ||||||| ||||| | ||| || | |||||||| ||
Sbjct 546 TTTGGGAATTTAGAAGTAAGAGTAGCAGTGTGGAAGCTGATTGCTGCTTAGGTGGTGGAT 605
Query 608 GCAAAGGATATATGTTTGCATTAGAGGTTACCGAAGAACTCGAGGAT-TGGCCAGAGCGA 666
||||||| ||||||||||| |||||||| | |||||||| | | || ||||| |||| |
Sbjct 606 GCAAAGGTTATATGTTTGCGTTAGAGGTGAAGGAAGAACTTGCG-ATATGGCCTGAGC-A 663
Query 667 A-A-GAACCGCCAGCGGAGATGGTTGAATGTTAAAGAAGCGTTGGAGCTTTGTCGGTATG 724
| | || |||| || | |||||| ||||||| |||||||| |||||||| ||||||||||
Sbjct 664 AGATGA-CCGCGAGAGAAGATGGCTGAATGTAAAAGAAGCCTTGGAGCTGTGTCGGTATG 722
Query 725 AGTGGATGCAGAGAGCACTTGAAGAGTTTTTGA-GAGTAATGGAAGATGAAGGAAG 779
||||||||||||| || |||||||||||| | | ||||||||| ||| ||||||||
Sbjct 723 AGTGGATGCAGAGCGCTCTTGAAGAGTTTCT-ACGAGTAATGGCAGAAGAAGGAAG 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5