BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471442 Length=671 Score E Sequences producing significant alignments: (Bits) Value AT1G12890.1 | Symbols: | Integrase-type DNA-binding superfamil... 857 0.0 > AT1G12890.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:4391734-4392393 FORWARD LENGTH=660 Length=660 Score = 857 bits (464), Expect = 0.0 Identities = 611/678 (90%), Gaps = 26/678 (4%) Strand=Plus/Plus Query 1 ATGTTGAAATCAAGAAACAAGAGCAAAAGCAAACAAGAGAAGAAGTCACAAGAAGGGAAG 60 |||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||| Sbjct 1 ATGTTGAAATCAAGTAACAAGAGAAAAAGCAAAGAAGAGAAGAAGTTACAAGAAGGGAAG 60 Query 61 TACCTTGGAGTAAGGAGGCGTCCATGGGGAAGATATGCAGCTGAAATCAGAAACCCTTTT 120 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TACCTTGGAGTGAGGAGACGTCCATGGGGAAGATATGCAGCTGAAATCAGAAACCCTTTT 120 Query 121 ACGAAAGAACGACATTGGCTTGGAACGTTTGATACAGCCGAAGAAGCTGCTTTTGCCTAC 180 || |||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 ACTAAAGAAAGACATTGGCTTGGAACGTTTGATACAGCCGAAGAAGCTGCTTTTGCATAT 180 Query 181 GATGTTGCTGCTCGATCCATCAGCGGCTCTCTAGCTACAACCAACTTCTTCTACACTGAA 240 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 GACGTTGCTGCTCGATCCATCAGCGGCTCTCTAGCTACAACAAACTTCTTCTACACTGAA 240 Query 241 AACACCTCTTTAAAAACACAACCACAACAGTTGTTACAGTCTTTAGG-GCCTGATATGAC 299 |||||||||||| ||| ||| |||||||||| | | || || |||| ||||||| Sbjct 241 AACACCTCTTTAGAAAGACATCCACAACAGT-----C--T-TT--GGAGCCTCATATGAC 290 Query 300 TTGGGGATCTTCTAGTGTCTCTCTTCTTCATGATCAGCCTTTTGAAAACAACCATTTTGT 359 |||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 291 TTGGGGATCTTCTAGTCTCTGTCTTCTTCAAGATCAGCCTTTTGAAAACAACCATTTTGT 350 Query 360 TTCTGATCCTATCTCTTCTT-TTT--CTCAAGAACAAGAGTCTTCTGCCAATCTCACTAA 416 | |||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||| Sbjct 351 TGCTGATCCTATCTCTTCTTCTTTTTCTCAAAAACAAGAGTCTTCTACCAATCTCACTAA 410 Query 417 CTCTTTCTCACATTGTTATGACGATG---ATCATGTTGGTCAAAACAAAGAGATTTCTTT 473 | ||||||||||||||||| | |||| |||||||||| |||| ||||||||||||||| Sbjct 411 CACTTTCTCACATTGTTATAATGATGGTGATCATGTTGGCCAAAGCAAAGAGATTTCTTT 470 Query 474 GCCTTCTTTGCCTAATGATATGTCAAACAGTCTATTCTGTAATCAGGACAAAGCCGGTGA 533 ||| |||||||||||||||||| ||||| || |||||||||||| |||||| Sbjct 471 ACCT---------AATGATATGTCAAACAGTTTATTCGGTCATCAGGACAAAGTCGGTGA 521 Query 534 AGATGACAATGCAGACCATATGAAGATTGGCTCAGTTCTCGGCGATGAACCTCACTGCTT 593 | ||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||| Sbjct 522 ACATGACAATGCAGACCATATGAAGTTTGGCTCAGTTCTCAGCGACGAACCTCTCTGCTT 581 Query 594 CGAGTATGACTACATTGGGAATTATCTTCAGAGTTTTCTCAAAGATGTCAACGGTGATGC 653 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 582 TGAGTATGACTACATTGGGAATTATCTTCAGAGTTTTCTCAAAGATGTCAACGACGATGC 641 Query 654 TCCTCAGTTTCTTATGTG 671 ||| |||||||||||||| Sbjct 642 TCCACAGTTTCTTATGTG 659 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32451258962 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5