BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471442
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12890.1 | Symbols: | Integrase-type DNA-binding superfamil... 857 0.0
> AT1G12890.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:4391734-4392393 FORWARD LENGTH=660
Length=660
Score = 857 bits (464), Expect = 0.0
Identities = 611/678 (90%), Gaps = 26/678 (4%)
Strand=Plus/Plus
Query 1 ATGTTGAAATCAAGAAACAAGAGCAAAAGCAAACAAGAGAAGAAGTCACAAGAAGGGAAG 60
|||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct 1 ATGTTGAAATCAAGTAACAAGAGAAAAAGCAAAGAAGAGAAGAAGTTACAAGAAGGGAAG 60
Query 61 TACCTTGGAGTAAGGAGGCGTCCATGGGGAAGATATGCAGCTGAAATCAGAAACCCTTTT 120
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TACCTTGGAGTGAGGAGACGTCCATGGGGAAGATATGCAGCTGAAATCAGAAACCCTTTT 120
Query 121 ACGAAAGAACGACATTGGCTTGGAACGTTTGATACAGCCGAAGAAGCTGCTTTTGCCTAC 180
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 ACTAAAGAAAGACATTGGCTTGGAACGTTTGATACAGCCGAAGAAGCTGCTTTTGCATAT 180
Query 181 GATGTTGCTGCTCGATCCATCAGCGGCTCTCTAGCTACAACCAACTTCTTCTACACTGAA 240
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GACGTTGCTGCTCGATCCATCAGCGGCTCTCTAGCTACAACAAACTTCTTCTACACTGAA 240
Query 241 AACACCTCTTTAAAAACACAACCACAACAGTTGTTACAGTCTTTAGG-GCCTGATATGAC 299
|||||||||||| ||| ||| |||||||||| | | || || |||| |||||||
Sbjct 241 AACACCTCTTTAGAAAGACATCCACAACAGT-----C--T-TT--GGAGCCTCATATGAC 290
Query 300 TTGGGGATCTTCTAGTGTCTCTCTTCTTCATGATCAGCCTTTTGAAAACAACCATTTTGT 359
|||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 291 TTGGGGATCTTCTAGTCTCTGTCTTCTTCAAGATCAGCCTTTTGAAAACAACCATTTTGT 350
Query 360 TTCTGATCCTATCTCTTCTT-TTT--CTCAAGAACAAGAGTCTTCTGCCAATCTCACTAA 416
| |||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||
Sbjct 351 TGCTGATCCTATCTCTTCTTCTTTTTCTCAAAAACAAGAGTCTTCTACCAATCTCACTAA 410
Query 417 CTCTTTCTCACATTGTTATGACGATG---ATCATGTTGGTCAAAACAAAGAGATTTCTTT 473
| ||||||||||||||||| | |||| |||||||||| |||| |||||||||||||||
Sbjct 411 CACTTTCTCACATTGTTATAATGATGGTGATCATGTTGGCCAAAGCAAAGAGATTTCTTT 470
Query 474 GCCTTCTTTGCCTAATGATATGTCAAACAGTCTATTCTGTAATCAGGACAAAGCCGGTGA 533
||| |||||||||||||||||| ||||| || |||||||||||| ||||||
Sbjct 471 ACCT---------AATGATATGTCAAACAGTTTATTCGGTCATCAGGACAAAGTCGGTGA 521
Query 534 AGATGACAATGCAGACCATATGAAGATTGGCTCAGTTCTCGGCGATGAACCTCACTGCTT 593
| ||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||
Sbjct 522 ACATGACAATGCAGACCATATGAAGTTTGGCTCAGTTCTCAGCGACGAACCTCTCTGCTT 581
Query 594 CGAGTATGACTACATTGGGAATTATCTTCAGAGTTTTCTCAAAGATGTCAACGGTGATGC 653
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 582 TGAGTATGACTACATTGGGAATTATCTTCAGAGTTTTCTCAAAGATGTCAACGACGATGC 641
Query 654 TCCTCAGTTTCTTATGTG 671
||| ||||||||||||||
Sbjct 642 TCCACAGTTTCTTATGTG 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5