BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471447
Length=3319
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12930.1 | Symbols: | ARM repeat superfamily protein | chr1... 5422 0.0
> AT1G12930.1 | Symbols: | ARM repeat superfamily protein | chr1:4398375-4405605
REVERSE LENGTH=3341
Length=3341
Score = 5422 bits (2936), Expect = 0.0
Identities = 3199/3323 (96%), Gaps = 29/3323 (1%)
Strand=Plus/Plus
Query 1 gaagaagaagaagaagaaaaaaaatagagtggaagaagaagagagaaagagaggagagTG 60
|||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct 27 GAAGAAGAAGAAGAAGAAAAAAAATAGAGT-G--GAAGAAGAGAGAAAGAGAAGAGAGTG 83
Query 61 GAATGCAACAAAATAAAAATAGAGTG-GAATGGAGTTACAGAGAAAAGTAGCAGAAGCAA 119
||||||||| ||| | |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 84 GAATGCAAC-AAA-AGAAATTGAGTGAGAATGGAGTTACAGAGAAAAGTAGCAGAAGCAA 141
Query 120 TTCATGTCTTGAATCACGATCCTGAATCTTCCAATAGAGTTGCTGCTAATCAATGGCTTG 179
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 142 TCCATGTCTTGAATCACGATCCTGAATCTTCCAATAGAGTTGCTGCTAACCAATGGCTTG 201
Query 180 TTCAATTCCAGCTTACTCCTTCTGCTTGGGATGTCTCCACTTCTCTCCTCACTTCTCCGA 239
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 202 TTCAATTCCAGCTTACTCCTGCTGCTTGGGACGTCTCCACTTCTCTCCTCACTTCTCCGA 261
Query 240 TTGTTTCTCTATTCGACCTCCAATTCTTCGCTGCTCAGATTCTCCGTCGAAAGATTCAGA 299
|||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 262 TTGTTTCTCTTTTCGACCTCCAATTCTTCGCCGCTCAAATTCTCCGCCGAAAGATTCAGA 321
Query 300 ACGAAGCATCGAATCTTCAATCAACTGCTAAAGATGCTCTTCTTAATGCCCTTCTTCTTG 359
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 322 ACGAAGCATCGAATCTTCAATCTACAGCTAAAGATGCTCTTCTCAATGCCCTTCTTCTTG 381
Query 360 CTGCTAAGAGATATAGCTCCGGTGTTCCTCAGCTTTTGACGCAGATATGTTTAGCTCTCT 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 382 CTGCTAAGAGATATAGCTCCGGTGTTCCTCAGCTATTGACGCAGATATGTTTAGCTCTCT 441
Query 420 CTGCGCTTCTTCTTCACGCGGATCCTTATTCTAAGCCCTTTGATAAGTTAATGTTTGCAC 479
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 442 CTGCGCTTCTTCTTCACTCGGATCCTTATTCAAAGCCCTTTGATAAGTTAATGTTCGCAC 501
Query 480 TCCAGAATCTTCAGGCTCATGATGATGGTAATGTTGTCTTGCTTGAGCTTCTCACTGTGC 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 502 TCCAGAATCTTCAGGCTCATGATGATGGTAATGTCGTCTTGCTTGAGCTTCTCACTGTGC 561
Query 540 TTCCTGAAGAAATATCTGATACTCGCCATGTTTCTCATCACTCTGATCTTCGTCAGGAGC 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 562 TTCCTGAAGAAATATCTGATACTCGCCATTTTTCTCATCACTCTGATCTTCGTCAGGAGC 621
Query 600 TTCTCTCGCATACTTCCATGGTTCTTGATTTCTTACTCCAGCAGTCTGAGAAGCAA-TTC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 622 TTCTCTCGCATACTTCCATGGTTCTTGATTTCTTACTCCAGCAGTCTGAGAACCAATTTG 681
Query 659 TCCTCTCCTCTTTACCCTCATGACAACAATCGCAAAATACTTCGTTGCTTACTGAGTTGG 718
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 682 T-CTCTCCTCTTTACCCGCATGATAACAATCGCAAAATACTTCGTTGCTTACTGAGTTGG 740
Query 719 GTTCGTGCTGGATGTTTCTCTGAGATTCCACAAGGCGCAGTGCCTTCCCACCCCCTTCTT 778
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 741 GTCCGTGCTGGATGTTTCTCCGAGATTCCACAAGGCGCAGTGCCTTCTCACCCCCTTCTT 800
Query 779 AACTATGTATTTAATGCCCTGCAGGGGACTACTTTTGATCTCGCCATTGAGGTACTTGTC 838
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 801 AACTATGTATTTAATGCCCTGCAGGGTACTACTTTTGATCTTGCCATTGAGGTGCTTGTT 860
Query 839 GAACTTGTGACTCGGCATGAGGATCTTCCTCAGGTTTTATTGTACAAAGTACAGTTTCTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GAACTTGTGACTCGGCATGAGGATCTTCCTCAGGTTTTATTGTACAAAGTACAGTTTCTC 920
Query 899 AGAGATACACTTCTAAAACCAGCTCTTATAAATGCTGATCTACAAATCATCTCTGGCCTG 958
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 921 AGAGATACACTTCTAAAACCAGCTCTTATAAATGCTGATCTAAAAATTATCTCTGGCCTG 980
Query 959 GCATGCTTGATGTCTGAAATCGGACAAGCTGCACCATGCTTGATTGTTGAAGCAAGTTCT 1018
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 981 GCATGCTTGATGTCTGAAATCGGACAAGCTGCACCATGCTTGATAGTTGAAGCTAGTTCT 1040
Query 1019 GAAGCGCTTATTTTGACTGATGCAATTTTGAGCTGTGTGACATTTCCAAGTGAAGACTGG 1078
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1041 GAAGCGCTTATTTTGACTGATGCGATTTTGAGCTGTGTGACATTTCCAAGTGAAGACTGG 1100
Query 1079 GAGATTGCAGACTCAACTGTACAATTTTGGTCAACTTTTGCGACATATATACTTAGCCTA 1138
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1101 GAGATTGCAGACTCTACTGTACAGTTTTGGTCAACTTTTGCGACATATATACTTAGCCTA 1160
Query 1139 GGTGGAAACAGACA-AAGTGACAGAAATCGTGTGAAAGATACATTTCTACCAGTTTTCTC 1197
|||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1161 GGTGGAAACAGACAGAA-TGACAGAACTCGTGTGAAAGATACATTTCTACCAGTTTTCTC 1219
Query 1198 AGCTTTAGTTGATGCTCTTGTGCTACGTGCTCAGGTTGATGAGTTTACCTCCAGTGATGA 1257
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1220 AGCTTTAGTTGATGCCCTTGTGCTGCGTGCTCAGGTTGATGAGTTTACCTCCAGTGATGA 1279
Query 1258 GAGTCCAGGGCTTGACCTTCCTGATGGCCTGTTGCATTTTAGAAATAATCTTCTTGAGCT 1317
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 GAGTCCGGGGCTTGACCTTCCTGATGGCCTGTTGCATTTTAGAAATAATCTTCTTGAGCT 1339
Query 1318 CTTGGTAGATATTTGTCAGCTACTCCATCCTACAACATTTGTGAGTAAGTTATTTTTTGG 1377
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1340 CTTGGTAGATATTTGTCAGCTACTTCATCCTACAACATTTGTGAGTAAGTTATTTTTTGG 1399
Query 1378 TGGTGTGCCTTCTTCAAATATTTCGATGCCCTTGAGGGAGATTGAGGCGAAGTTGTTTGC 1437
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TGGTGTGCCTTCTTCAAGTGTTTCGATGCCCTTGAGGGAGATTGAGGCGAAGTTGTTTGC 1459
Query 1438 TCTTACTGCGGTTTCTGAAATTATTTTGCAAGAGGGAGAGGCCTTTGATTTTTCATTGAT 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1460 TCTTACTGCGGTTTCTGAAATTATTTTGCAAGAGGGAGAGGCCTTTGATTTTGCATTGAT 1519
Query 1498 CATGCAATTGGTTTCTGCTTTTTCCGTTAGACCATCCAGCGAGCTCAAGGGGTTTATATG 1557
|||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1520 CATGCAATTGGTTTCTGCATTTTCCGTTAGGCCGTCCAGCGAGCTCAAGGGGTTTATATC 1579
Query 1558 TGTTGTATACAGATCACTGGCAGATGTTGTTGGCTCCTATTCAAGATGGATCTCTGTTTT 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 TGTTGTATACAGATCACTGGCAGATGTTGTTGGCTCCTATTCAAGATGGATCTCTGTTTT 1639
Query 1618 TCCAAGTAACGCCAGACCCTTGCTATTATTTCTCGCAGGAGGGATTTCTGAACCTATTTG 1677
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1640 TCCAAGTAACGCCAGACCGTTGCTATTATTTCTCGCAGGAGGGATTTCCGAACCTATTTG 1699
Query 1678 TTCGCATGCTTGTGCTTCTGCTCTGCGTAAAATTTGTGAAGATGCTCCTGCTGTAATCCA 1737
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1700 TTCACATGCTTGTGCTTCTGCTCTGCGTAAAATTTGTGAGGATGCTCCTGCTGTAATCCA 1759
Query 1738 GGAAACATCAAATTTAGATATCTTAATGTGGATAGGAGAGTGTTTGGAGCAGTGGAATTT 1797
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1760 GGAAACATCGAATTTAGATATCTTAATGTGGATAGGAGAGTGTTTGGAGCAGTGGGATTT 1819
Query 1798 GGCCTTGGAAGATGAGGAAGAAGTCATTACCGCTATCACTGTGATCCTTGGCTCTGTTGC 1857
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 GACCTTGGAAGATGAAGAAGAAGTCATTACCGCTATCACTGTGATCCTTGGCTCTGTTGC 1879
Query 1858 TAACAAAGAGCTACAAAATAAATTATTAACTCAATTGCTTTCTTCAAGTTATGGAGTTCT 1917
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1880 TAATAAAGAGCTACAAAATAAATTATTAACTCAATTGCTTTCGTCAAGTTATGGAGTTCT 1939
Query 1918 TTCGAAACTTGTAGATGAAGACGCTGAGTCTTCTGGTAGACAAAGTCCAGCCACGTATAC 1977
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1940 TTCGAAACTTGTAGATGAAGACGCTGAGTCTTCTGGTAGACAAAGTCCAGCCACTTATAC 1999
Query 1978 ACGAATGCTGAGCTCTGTTACAAGAGGTCTTTACAGGATAGGAACTGTATTCAGTCACCT 2037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2000 ACGAATGCTGAGCTCTGTTACAAGAGGTCTTTACAGGATAGGAACTGTATTCAGTCACCT 2059
Query 2038 TGCAACGTCTCTGTCATCTGTCCCTGTGGCTGATGGTCCAATCCTTTCTTTGTTGACTGT 2097
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 2060 TGCAACGTCTCTGCCATCTGTTCCTGTGGCAGATGGTCCAATCCTTTCTTTGTTGACTGT 2119
Query 2098 TTTCTGGCCCATTTTGGAGAAGCTATTTAGGTCTGAACACATGGAGAGTGGTAGTTTAGC 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2120 TTTCTGGCCCATTTTGGAGAAGCTATTTAGGTCTGAACACATGGAGAGTGGTAGTTTAGC 2179
Query 2158 TGCAGCAGCATGCCGTGCCCTTTCAGTGGCAGTTCAGTCGTCAGGTGAGCACTTTATGCT 2217
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2180 TGCAGCAGCATGCCGTGCTCTTTCAGTGGCAGTTCAGTCGTCAGGTGAGCACTTTATGCT 2239
Query 2218 ACTACTACCTAGTGTACTGGATTGTCTATCGAGAAACTTTCTGTCATTCCAAAGCCAAGA 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 GTTACTACCTAGTGTACTGGATTGTCTATCGAGAAACTTTCTGTCATTCCAAAGCCAAGA 2299
Query 2278 ATGTTACATAAGAACAGCCTGTGTAATCGCCGAAGAATTTTGTCATAAGGAGGAATACGG 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2300 ATGTTACATAAGAACAGCCTGTGTAATCGCCGAAGAATTTTGTCATAAGGAGGAATATGG 2359
Query 2338 GTCCTTGTTTATCACTACGTTTGAGAGATTTACTCAAGCATCATCACTGATGGGCATAAA 2397
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2360 GTCCTTATTTATCACTACGTTTGAAAGATTTACTCAAGCATCATCACTGATGGGCATAAA 2419
Query 2398 TTCGTCATATATATGCGACCAAGAACCCGATTTGGTGGAAGCGTATGTGAATTTCGCATC 2457
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2420 TTCTTCATATATATGCGACCAAGAACCCGATTTGGTGGAAGCGTATGTGAATTTCGCATC 2479
Query 2458 AGCACTTATCCGTGGTTGTCATAAGGAGTTGTTGGGTACTTCTGGAACACTTCTGGAAAT 2517
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2480 AGCACTTATCCGTAGTTGTCATAAGGAGTTGTTGGGTACTTCTGGAACACTTCTTGAAAT 2539
Query 2518 TTCTTTCCACAAAGCAGCTATCTGTTGTACAGCTATGCACCGAGGTGCAGCTTTAGCTGC 2577
||||||||||||||| ||||| |||||||||||||||||| |||| || |||||||||||
Sbjct 2540 TTCTTTCCACAAAGCGGCTATATGTTGTACAGCTATGCACAGAGGCGCTGCTTTAGCTGC 2599
Query 2578 AATGTCATACTTGTCAGGTTTCTTGGAGGTTTCACTTTCATCCATGATCGAAACCGTGAA 2637
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2600 AATGTCATACTTATCAGGTTTCTTGGAGGTTTCACTTTCTTCCATGATCGAAACCGTGAA 2659
Query 2638 TAGCATATCAGAGGGATCATTCAGCGTGGTCTCTGTCCAGGTCGTATCTCACTGTGGAGA 2697
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2660 TAGCATATCAGATGGATCATTCAGCGTGGTCTCTGTCCAGGTCGTATCTCACTGTGGAGA 2719
Query 2698 GGGACTTTTGTCTAATCTGGTCTATGCTCTACTTGGAGTTGCAGCTATGTCAAGGGTCCA 2757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2720 GGGACTTTTGTCTAATCTGGTCTATGCTCTACTTGGAGTTGCAGCTATGTCAAGGGTCCA 2779
Query 2758 CAAGTGTTCAACGATACTGCAACAATTAGCTGCAATCTGCAGTTTATGTGAGAGGACTTC 2817
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2780 TAAGTGTTCAACGATACTGCAACAATTAGCTGCAATCTGCAGTTTATGTGAGAGGACTTC 2839
Query 2818 ATGGAAAGGAATGTTGTGTTGGAAATCTCTCCAAGGATGGCTAAACTCAGCGGTTTGGGC 2877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2840 ATGGAAAGGAATGTTGTGTTGGAAATCTCTCCAAGGATGGCTAAACTCAGCGGTTTGGGC 2899
Query 2878 ACTTCCGAGTGAGTATCTAAAGCAAGGAGAAGCAGAAAGCATAGTGAGGGAATGGTCAGA 2937
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2900 ACTTCCGAGCGAGTATCTAAAGCAAGGAGAAGCAGAAAGCATAGTGAGGGAATGGTCAGA 2959
Query 2938 AGCTCTAGGAGGTGCAGGGATCGATTACCTTGAGAACAAAAGCTGCAATTTTGGAAGCAA 2997
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2960 AGCTCTAGGAGGTGCAGGGATCGATTATCTTGAGAACAAAAGCTGCAATTTTGGAAGCAA 3019
Query 2998 TAACAACAGTTCAGGAGGAGGACATATGCAAGGGAAACACGGTCGAACATTGAAGCGATT 3057
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3020 TAACA---GTTCAGGAGGA---CATATGCAAGGGAAACACGGTCGAACATTGAAGCGATT 3073
Query 3058 AGTGAGAGATTTTGCGGATTCTCATCGAAACGATCCAAATCCAAACATCATATGAATCAA 3117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3074 AGTGAGAGATTTTGCGGATTCTCATCGAAACGATCCAAATCCAAACATCATATGAAT-AA 3132
Query 3118 CCAATCAATCCATCAACtttttttctttgttttatgttcattttattttGTTGCCTTAAT 3177
| |||||| || |||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 3133 --A-TCAATCGATAAACTTTTTTTTTTTGTA--ATGTTTATTTTATTTTGTTGCCTTAAT 3187
Query 3178 AATGAGGGCAATGATCCATCATCTTCTTCTTCTTCATTTCTGTCACTTCTCTGTTTCTAA 3237
||||||||||||||||||||||||||||| | ||| | || | | | ||||||||||||
Sbjct 3188 AATGAGGGCAATGATCCATCATCTTCTTCAT-TTC-TGTC-G--A-TGCTCTGTTTCTAA 3241
Query 3238 TGTACAGTAGGAGGGGAAA-GAAACCTCATGAAGAATCTTAAGCCATTTCTTTTAGATTC 3296
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 3242 TGTACAGTAGGAGAGGAAAAGAAACCTCATGAAGAATCTTGAGCCATTTCTTTTAGATTC 3301
Query 3297 ATCTGATGAGAAGAATAATAATA 3319
||||||||||||| |||||||||
Sbjct 3302 ATCTGATGAGAAGGATAATAATA 3324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165149576356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5