BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471451
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12970.1 | Symbols: PIRL3 | plant intracellular ras group-re... 2185 0.0
> AT1G12970.1 | Symbols: PIRL3 | plant intracellular ras group-related
LRR 3 | chr1:4423640-4425789 FORWARD LENGTH=1639
Length=1639
Score = 2185 bits (1183), Expect = 0.0
Identities = 1378/1471 (94%), Gaps = 18/1471 (1%)
Strand=Plus/Plus
Query 1 TCTCAAAAGCTCTCATCTTCAATCTCGTAGA-ACATGGATCATGATCTAGAGATCTTCCC 59
|||||||||||||||||||||||||| | || | |||||||||||||| |||||||||||
Sbjct 55 TCTCAAAAGCTCTCATCTTCAATCTCATTGAGA-ATGGATCATGATCTCGAGATCTTCCC 113
Query 60 TTTGCTCTCCTACGTCCTCCACCATTCCGATCCTGCTTCTCACGCGCCACCGTCTCCGA- 118
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 114 TTTACTCTCCTACGTCCTCCACCATTCCGATCCCGCTTCTCACGCGCCACCGTCT-CTAG 172
Query 119 CGATTCAGCAATCTCTAGCGAATCGTTATCCCCTTCTCACCAATCCATATGTAATCTCCT 178
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 173 CGATTCAGCAATCTCTTGCGAATCGTTATCCCCTTCTCACCAATCCTTATGTAATCTCCT 232
Query 179 CGTTGATTGAATCAATTCCCAGTACAATCACGCAGACCCTTTACGTATTCGGCTCTCTTG 238
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 233 CGTTGATTGAATCAATTCCCAGTACAATCACGCAGACCCTTTTCGTATTTGGCTCTCTTG 292
Query 239 GGCCACGACCTGATCCTTTAGCTGTCTCTTCTGCTCGGTCCAAGAT-CGCTGAGATCCGA 297
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |
Sbjct 293 GGCCACGACCTGATCCTTTAGCTGTCTCTTCTGCTCGGTCTAAGATCCG-AGAGATCAAA 351
Query 298 GAGAATGATTCGTTGTCTCCGGAGGATGCGGCTAAGGAAGAGCAGGTTTACGTTACGGTG 357
||||||||||| || || ||||| |||||||||||||||||||||||||||| | ||||
Sbjct 352 GAGAATGATTCTTTATCGCCGGAAGATGCGGCTAAGGAAGAGCAGGTTTACGCTGCGGTT 411
Query 358 GTGAGGTTAGAGGAAGTTCATGAAGGATACGAGAAGCAATTGAGGGATTTGGAGGAGGAG 417
||||| ||||||||||||||||||||||| |||||||| || || |||||||||||||||
Sbjct 412 GTGAGTTTAGAGGAAGTTCATGAAGGATATGAGAAGCAGTTAAGAGATTTGGAGGAGGAG 471
Query 418 -CTGTGTAGGGTTTATGCTTCGGCGGTTGAATCCTTGAGCGGTGGCGATGAAGTGAATGA 476
|| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 472 ATTG-GTAGGGTTTATGCTTCGGCGGTTGAATCATTGAGCGGTGGTGATGAAGTGAATGA 530
Query 477 GGAGGTTTTAGCGGTGATTAAGGAAGCTGAAGATGGTGGAGTCGTTGAGAGGATTGATCT 536
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 531 GGAGGTTTTAGCGGTGATTAAAGACGCTGAAGATGGTGGAGTCGTTGAAAGGATTGATCT 590
Query 537 CTCTGATCGTGAGCTTAAGCTTCTTCCTGATGCTTTAGGGAAAATCGTTGCTTTGGTTTC 596
||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 591 TTCTGATCATGAGCTTAAGCTTCTTCCTGATGCTTTAGGGAAAATCGTCGGTTTGGTTTC 650
Query 597 ACTGAATCTTTCTCGTAACAATCTCAAGTTCCTACCTGATACAATCTCAGGACTTGAGAA 656
||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 651 ACTGAATGTCTCTCGTAACAATCTCAGGTTTCTACCTGATACAATCTCAGGACTTGAGAA 710
Query 657 ACTGGAGGAGCTAGATTTATCTTCAAACCGTCTAGTGTCTCTTCCCGACTCTATCGGACT 716
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||
Sbjct 711 ACTGGAGGAGCTAGATTTATCTTCAAACCGTCTCGTGTTTCTTCCCGACTCTATTGGACT 770
Query 717 GTTACTTAATCTGAGGATCTTAAATGTGACGGGCAACAAGCTAACTTCACTCCCAGAAAG 776
|||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 771 GTTACTTAATTTGAGGATCTTAAATGTGACGGGGAACAAGCTAACTTTACTCCCAGAAAG 830
Query 777 CATTGCGCAGTGCAGGTCATTAGTTGAGTTAGATGCCAGCTTCAACAACTTGACTTCTTT 836
||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 831 CATTGCGCAATGCAGGTCACTGGTAGAGTTAGATGCCAGCTTCAACAACTTGACTTCTTT 890
Query 837 GCCTGCAAACATCGGATACGGATTACTCAATCTCGAAAGGCTATCAATCCAGCTGAACAA 896
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 891 GCCTGCAAACTTCGGATACGGATTACTCAATCTCGAAAGGCTATCGATCCAGCTGAACAA 950
Query 897 AATCCGTTTCTTCCCCAATTCCATGTGTGAGATGCGTTCTCTAAGGTATATAGACGCACA 956
|||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 951 AATCCGTTTCTTCCCCAATTCCATATGTGAGATGCGTTCTCTAAGGTATCTCGACGCACA 1010
Query 957 CATGAACGAAATCCACGGCCTTCCAATCGCTATAGGGAGACTCACAAGCCTTGAAGTAAT 1016
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1011 CATGAACGAAATCCACGGCCTTCCAATCGCTATAGGGAGACTCACAAACCTTGAAGTCAT 1070
Query 1017 GAACTTGAGCAGCAACTTCAGCGACTTGACCGAACTTCCTGACACAATCTCTGATTTAGC 1076
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1071 GAACTTGAGCAGCAACTTCAGCGACTTGATTGAACTTCCTGACACAATCTCTGATTTAGC 1130
Query 1077 TAACTTGAGGGAGCTAGATCTCAGCAACAACCAGATCAGAGTCTTGCCTAACTCGTTTTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1131 TAACTTGAGGGAGCTAGATCTCAGCAACAACCAGATCAGAGTCTTGCCTGACTCGTTTTT 1190
Query 1137 CAGATTGGAGAAGCTGGAGAAACTGAACTTGGACCAGAACCCATTGGAGTTTCCTCCACA 1196
||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct 1191 CAGGCTGGAGAAGCTGGAGAAACTGAACTTGGACCAGAACCCTTTGGAGTATCCCCCACA 1250
Query 1197 AGAGATGGTTAACCAAAGCGCTGAAGCGGTTCGAGAGTTCATGAGGAAGAGATGGGAAGA 1256
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1251 AGAGATGGTTAACCAAAGCGCTGAAGCAGTTCGAGAGTTCATGAGGAAGAGGTGGGAAGA 1310
Query 1257 GATGGTGGAGGAAGAGCAATTGAGGAGTGTGATAGAAGCTGAGAAGCAAC--G-AGGAGC 1313
||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 1311 GATGGTGGAGGAAGAGCAATTGAGGAGTGTGATTGAAGCTGAGAAGCAACAAGGAGGAGC 1370
Query 1314 AACAGGTTGGCTCTCATGGGGAAGCTCCATTGTTACTAGCCTTTTTTCTGGAGGTGCTCA 1373
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1371 AACAGGTTGGCTCTCATGGGGGAGCTCCATTGTTACTAGCCTTTTCTCTGGAGGTACTCA 1430
Query 1374 TGTTGGTGCAGCTAAGAAGCCTAAAGACTCATTTTTGGATGAACAACTCTGAATTTTTTA 1433
|| |||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||
Sbjct 1431 TGGTGGTGCAGCTAAGAAGCCTAAAAACTCATTTTTGGATGAACAGCTCTGA-TTTTTT- 1488
Query 1434 AATTCTTTTGTTGGCTTTGCTATATCTAGCT 1464
|| |||| | |||||| ||||||||||||
Sbjct 1489 --TT-TTTT-T-GGCTTTACTATATCTAGCT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5