BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471456
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13030.1 | Symbols: | sphere organelles protein-related | c... 2878 0.0
> AT1G13030.1 | Symbols: | sphere organelles protein-related |
chr1:4444043-4447406 REVERSE LENGTH=2196
Length=2196
Score = 2878 bits (1558), Expect = 0.0
Identities = 1893/2048 (92%), Gaps = 49/2048 (2%)
Strand=Plus/Plus
Query 1 TACTTGTCTGAAGTTCGTCTACGATGGAGGAAGAGAAGGTGAGGATTCGTCTGGTGTTTG 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 106 TACTTATCTGAAGTTCGTCTACGATGGAGGAAGAGAAGGTGAGGGTTCGTCTGGTGTTTG 165
Query 61 AAGACCGACGGATTCTGAGTAAGTATCAGAAGAAGCAAGGTTTAACACGGAGCTGGGTTG 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 166 AAGACCGACGGATTCTGAGTAAGTATCAAAAGAAGCAAGGTTTAACACGGAGCTGGGTTG 225
Query 121 TTCTGAATCGTAAACGTCAGCGTACTGTTTCAGAGTTTTCTGATCATCTCTTTCACACAT 180
|||| ||||||||| |||| || ||| | |||||||||||||||||| ||||||||||||
Sbjct 226 TTCTAAATCGTAAATGTCACCGAACTATATCAGAGTTTTCTGATCATATCTTTCACACAT 285
Query 181 TCAGCCTCTGTGAAGCTTGTCCTCTTGGCCTCACTCTATCTATGGAAGGTTTCGTTTTGC 240
| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 286 TTAGCCTCTGTGAAGCGTGTCCTCATGGCCTCTCTCTATCTATGGAAGGTTTCGTTTTGC 345
Query 241 CACCGTTCGAGTCGAGCTGTGTATTGAAGGATAAAGATATCGTTTGTGTTAAGAAGAAGA 300
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CACCTTTCGAGTCCAGCTGTGTATTGAAGGATAAAGATATCGTTTGTGTTAAGAAGAAGA 405
Query 301 AAGAATCTTTGTTGGAGATTGTTGGAGAAGACAGTGAGGAGAATGTTTACAACGCTATTG 360
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 406 AAGAGTCTTTGTTGGAGATTGTTGGGGAAGACAGTGATGAGAATGTTTACAACGCTATTG 465
Query 361 AGGTTGAGGAGAGGCCTCA-ATTTCGTCCTGGTGAAATGCTTCTTGCTAATGAGGAATTC 419
|||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 466 AGGTTGAGGAAAGGCCTCAGA-TTCGTCCTGGTGAAATGCTGCTTGCTAATGAGGAATTC 524
Query 420 CAGAACGAAACTGGAGGATATGAAAGTGAGTCTGAGGAAGATGAGGTTGAAGAGGAAGCA 479
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 525 CAGAAGGAAACTGGAGGATATGAAAGTGAGTCTGAGGAAGATGAGCTTGAAGAGGAAGCA 584
Query 480 GAAGAGTTTGTGCCAGAGAAGAAGACTTCTAAGAAACGTAAAGCTTCCAGCAAAAGCCTA 539
|||||||||||||||||||||||| |||| |||||||||||| |||| ||||||| || |
Sbjct 585 GAAGAGTTTGTGCCAGAGAAGAAGGCTTCGAAGAAACGTAAAACTTCAAGCAAAAACC-A 643
Query 540 -AGCTCCAAGAGGAAGAAGTGTAAGTTAGCTACTACTGAGGAATCTCCCGAGGAAAGAG- 597
||| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 644 GAGCACCAAGAGGAAGAAGTGTAAGTTAGATACTACTGAAGAATCTCCCGACGAAAGAGA 703
Query 598 AAA-ACA-C-------AGC--TGTTGT------GAAGAAGAAGAAGAAATCATTGGATGT 640
||| ||| | ||| |||||| |||||||||||||||||||||||||||
Sbjct 704 AAACACAGCTGTTGTTAGCAATGTTGTGAAGAAGAAGAAGAAGAAGAAATCATTGGATGT 763
Query 641 ACAAA-TAGCTGAA-AATGATGAACAGGATAACGGTAACACCAAGCCCATTACCAAATCA 698
||||| | ||| || |||||||||||| |||||| || ||||| ||||| |||||||||
Sbjct 764 ACAAAGT-GCT-AACAATGATGAACAGAATAACGATAGTACCAAACCCATGACCAAATCA 821
Query 699 AAGAGGTCATCGCAACAAGAAGAGAGCAAAGAGCCTAACGATCTGTGCCAACTATCTGGT 758
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 822 AAGAGGTCATCACAACAAGAAGAGAGCAAAGAGCATAACGATCTGTGCCAACTATCTGCT 881
Query 759 GAAACTAAAAAGACACCTAGCAGAAGTGCTCGACGTAAAAAGGCGAAACGGCAATGGTTG 818
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 882 GAAACTAAAAAGACACCTAGCAGAAGTGCCCGACGTAAAAAGGCGAAACGGCAATGGCTG 941
Query 819 AGAGAGAAAACAAAACTAGAGAAGGAAGAGCTTCAACAGAAGCAGTTGGTTGTAGCACCC 878
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 942 AGAGAGAAAACAAAACTAGAGAAGGAAGAGCTTCTACAGACGCAGTTGGTTGTAGCACCC 1001
Query 879 AGTCAAAAACCAGTCATTACTATAGATTACCAAGCAACCGAGGAACATCACTGTGAAGCT 938
|| |||||||||||||| ||||||||| ||||||||||| ||||| | ||||||||| ||
Sbjct 1002 AGCCAAAAACCAGTCATCACTATAGATCACCAAGCAACCAAGGAAAAGCACTGTGAAACT 1061
Query 939 CTTGAAAATCAACAGCCAGATGAACTTAGTGATGGTGTCGGGGATGAAGTGGTTCCTGTG 998
||||||||||||||| |||| ||| ||||||||||| ||||||||||||| || ||||||
Sbjct 1062 CTTGAAAATCAACAGGCAGAAGAAGTTAGTGATGGTTTCGGGGATGAAGTTGTACCTGTG 1121
Query 999 GAAGTGAGGCCAGGCCACATTCGCTTCAAGCCACTCGCTGGAACAGATGAAG-CTCCCCT 1057
|||||||||||||||||||| ||||||||||| ||||||||||||||||||| || | ||
Sbjct 1122 GAAGTGAGGCCAGGCCACATACGCTTCAAGCCTCTCGCTGGAACAGATGAAGCCT-CTCT 1180
Query 1058 TGAAAGTGAACCTCTTGTGGAAAAAT-TCTTGTGGAATGGAAACATGACGAAGAAGAAAG 1116
||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 1181 TGATAGTGAACCTCTTGTGG-AAAATGTCTTGTGGAATGGAAACATGACGAAGAAGAAGG 1239
Query 1117 GACAGAAATGGGGCACAGAGAAGGCAGGATTTTCCAAACGATATGCTCAGGATTTCAATG 1176
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 1240 GACAGAAATGGGGCACAGAGAAGTCAGGGTTTTCCAAACGATATGCTCAGGATTTTAATG 1299
Query 1177 AAGATACTACTTATCAGACACAGCCCGCTGAAGCAGAGACACTTGCTAAGGGTCCGATCG 1236
||| | | | || | ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1300 AAG--A-TGC-TA-C-GACACAGCCCGCTGAAGCAGAGACACTTGCTAATTGTCCGATTG 1353
Query 1237 ATTATGAACAGCTTGTGGCTTACACTGGCTCAGTAAAGAAAGGAGATGTTATTGCATACC 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 ATTATGAACAGCTTGTGGCTTACACTGGCTCAGTAAAGAAAGGAGATGTTATTGCATACC 1413
Query 1297 GCCTCATTGAGCTAACATCATCTTGGACACCAGAGGTTTCCTCTTTTCGGGTTGGGAAGA 1356
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1414 GCCTCATTGAGTTAACATCATCTTGGACACCCGAGGTTTCCTCTTTTCGGGTTGGGAAGA 1473
Query 1357 TAAGCTACTATGATCCAGACTCCAAGAAGGTGACTTTGATGCCTGTTCAAGAATTTCCAA 1416
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1474 TAAGCTACTATGATCCAGACTCCAAGATGGTGACTTTGATGCCTGTTCAAGAATTTCCAA 1533
Query 1417 TCGAGAAAAAGACAGAAGAGGGCGACGATTTCTCCATGGAACCTGATACATCTCTTTATA 1476
||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1534 TCGAGAAAAAGACAGAAGAGGACGACGATTTCTGTATGCAACCTGATACATCTCTTTATA 1593
Query 1477 AAGAAGACGGATCCTTGGAGATAGAATTTTCTGCTCTGCTCGATGTCCGCAGTATCAAAA 1536
||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1594 AAGAAGATGGATCCCTGGAGATAGAATTTTCTGCTCTGCTCGATGTTCGCAGTGTCAAAA 1653
Query 1537 CTAGGTGCTCAGATTCCACAGAAGTCGCCAAGTCAGCACCGCCCGAGCCTGACCAGTCAG 1596
|||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1654 CTAGCAGCTCAGATTCTGCAGAAGTCGCCAAGTCAGCACTGCCCGAGCCTGACCAGTCAG 1713
Query 1597 CTACAAAGCTAAAGCTAAGCGCAAACAAAGATTTGCAAACCCCTATAAAAGAAAATGGAA 1656
||| ||||| ||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1714 CTAAAAAGCCAAAGCTAAGCGCAAACAAAGAATTGCAAACCCCTGCAAAAGAAAATGGAG 1773
Query 1657 AAGTGAACCCTTGGGAAGAACTAAGTGAAGCTTTAAGTGCGAAA-AAAGCAGAATTGTCT 1715
|||||| ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 1774 AAGTGAGCCCTTGGGAAGAACTAAGTGAAGCTTTAAGTGC-AAAGAAAGCAGCGTTGTCT 1832
Query 1716 CAGGCCAACAATGGGTGGAACAAGAAAGGGAGTTCAAGTGGAGGAGGCTCATGGTCTTAC 1775
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1833 CAGGCCAACAATGGGTGGAACAAGAAAGGGAGTTCAAGT---GGAGGCTCATGGTCTTAC 1889
Query 1776 AAGGCACTGCGAGGCAGTGCTATGGGTCCTGTAATGAACTATCTCAGATCTCAGAAAGAG 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 AAGGCACTGCGAGGCAGTGCTATGGGTCCTGTAATGAACTATCTCAGATCTCAGAAAGAG 1949
Query 1836 ATTTGAGAAA-TCAGGACACATCTCT--AGAAGAAACTCTGATGCTTTTTTCTTCATTTT 1892
|||||||||| | ||| ||||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 1950 ATTTGAGAAACT-AGGTCACATCTCTCTAGAAGAAACTCTGCTGCTTTTGTCTTCATTTT 2008
Query 1893 GGATTATGAAAAACTCAGACAAAGAGTAGAGAAAGCCATTTTGTTTT-GATGCTGTGAAA 1951
|||| ||||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 2009 GGAT-ATGAAAAACTCAGACAAAGGGTAGAGAAAGCCATTTTGTTTTTGATGCTGT-AAA 2066
Query 1952 -GCACTGCTGAGCTTTCTAAGGGTAAAGGTTTATGTATAGAGAAAAACGACGCATGTGTA 2010
|||| | | |||||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 2067 CGCACAGTTTAGCTTTCTAAGGTTAAAGGTTTATGTATAGAGAAAAACGATGAATGTGTA 2126
Query 2011 CTACTCTC 2018
|||||||
Sbjct 2127 ATACTCTC 2134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100049686185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5