BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471458
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1574 0.0
> AT1G13050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G26350.1);
Has 538 Blast hits to 510 proteins in 88 species: Archae -
0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses
- 8; Other Eukaryotes - 29 (source: NCBI BLink). | chr1:4450382-4451742
FORWARD LENGTH=1361
Length=1361
Score = 1574 bits (852), Expect = 0.0
Identities = 921/955 (96%), Gaps = 2/955 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCACAACCACTATGAAACCAACCCTCATTTCGTTCAGTTTTCCTTGCAGGATCAA 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 187 ATGTCTCACCACCACTATGAAACCAACCCTCATTTCGTTCAATTTTCCTTGCAGGATCAA 246
Query 61 CATCCCGGTGGTCCTTCTAGCTCATGGAACTCTCCGCACCATCATCAGATCCCACAGGCT 120
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 247 CATCAAGGTGGTCCTTCTAGCTCATGGAACTCTCCGCACCATCACCAGATCCCACAGGCT 306
Query 121 CACTCAGTTGCTCCACCAAGGGTGAAAATAAAAACTCGGGGACGCCACCAGACTGAGCCA 180
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 307 CACTCAGTTGCTCCACCCAGGGTGAAAATAAAGACTCGGGGACGCCACCAGACTGAGCCA 366
Query 181 CCTGAAACAATCCATGAATCGCCTTCCTCAAGACCCTTGCCACTGAGACCGGAGGAACCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CCTGAAACAATCCATGAATCGCCTTCCTCAAGACCCTTGCCACTGAGACCGGAGGAACCA 426
Query 241 TTACCACCACGCCATAATCCAAACTCTGCCAGGCCATTGCAATTGAGCCCTGAGGAGCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TTACCACCACGCCATAATCCAAACTCTGCCAGGCCATTGCAATTGAGCCCTGAGGAGCAA 486
Query 301 CGACCTCCACACCGTGGCTATGGATCTGAACCAACTCCATGGAGAACAGCTCCAAGACGA 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 487 CGACCTCCACACCGTGGCTATGGATCTGAACCAACTCCATGGAGAAGAGCTCCAACACGA 546
Query 361 CCAG-TGCATCAACCTGGTCCAAAGAGGACCAAACCCATGACATTGCCAGCCACAATCTG 419
|||| | |||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CCAGCTT-ATCAGCAAGGCCCAAAGAGGACCAAACCCATGACATTGCCAGCCACAATCTG 605
Query 420 CTGTGCAATTCTCCTGATCGTCCTAATTTTATCCGGTCTCATTCTCCTCTTAGTCTACCT 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 606 CTGTGCAATTCTCCTGATCGTCCTAATTTTATCAGGTCTCATTCTCCTCTTAGTCTACCT 665
Query 480 CGCCAACCGTCCACGCTCACCATACTTCGACATCTCAGCAGCAACCCTAAACACCGCCAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CGCCAACCGTCCACGCTCACCATACTTCGACATCTCAGCAGCAACCCTAAACACCGCCAA 725
Query 540 TCTGGACATGGGATATGTTCTAAATGGAGATCTCGCTGTTGTGGTAAACTTCACAAACCC 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 726 TCTGGACATGGGATATGTTCTAAATGGAGATCTCGCGGTTGTGGTAAACTTCACAAATCC 785
Query 600 AAGCAAGAAAAGCAGTGTGGACTTCAGCTACGTGATGTTCGAACTCTACTTCTACAACAC 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 786 AAGCAAGAAAAGCAGTGTGGACTTCAGCTACGTGATGTTCGAGCTCTACTTCTACAACAC 845
Query 660 ACTCATAGCCACCGAACACATTGAGCCATTCATTGTACCAAAGGGAATGTCAATGTTCAC 719
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 846 ACTCATAGCGACTGAACACATCGAGCCATTCATTGTACCAAAGGGAATGTCAATGTTCAC 905
Query 720 AAGCTTCCATCTCGTCAGCAGTCAGGTACAAATTCAGATGATTCAGAGCCAGGACTTGCA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 906 AAGCTTCCATCTCGTCAGCAGTCAGGTACAAATTCAGATGATTCAGAGTCAGGACTTGCA 965
Query 780 GCTGGAGCTCGGAACCGGTCCAGTGTTGTTGAACTTGAGAGGAACGTTTCACGCTCGCTC 839
|||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 966 GCTGCAGCTCGGAACTGGTCCAGTGTTGTTGAATTTGAGAGGAACGTTTCACGCTCGCTC 1025
Query 840 GAACCTCGGGTCGTTGATGAGATACTCTTATTGGTTGCACACACAGTGCAGCATCTCGTT 899
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1026 GAACCTTGGGTCGTTGATGAGATACTCTTATTGGTTGCACACACAGTGCAGCATCTCTTT 1085
Query 900 GAATACCCCTCCTTTAGGGACCTTGCGAGCAAGAAGATGCAGTACAAAACGCTAG 954
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 1086 AAATACCCCTCCTGCAGGGACCATGCGAGCAAGAAGATGCAATACAAAACGCTAG 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5