BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471459
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1 | ... 1195 0.0
AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolase... 913 0.0
> AT1G13060.2 | Symbols: PBE1 | 20S proteasome beta subunit E1
| chr1:4452212-4454876 FORWARD LENGTH=1280
Length=1280
Score = 1195 bits (647), Expect = 0.0
Identities = 713/744 (96%), Gaps = 7/744 (1%)
Strand=Plus/Plus
Query 262 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCGTATATGCTCGGTACGATGGCTG 321
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 493 CCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTG 552
Query 322 GAGGAGCTGCTGACTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 381
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTGCCGTCTACATG 612
Query 382 AGCTGGCAAACAAGAGGAGAATCTCTGTGTCCGGAGCATCAAAACTACTTGCGAACATGC 441
|||||||||||||||||||||||||||| |||||||| || ||||| ||||| |||||||
Sbjct 613 AGCTGGCAAACAAGAGGAGAATCTCTGTTTCCGGAGCTTCGAAACTTCTTGCCAACATGC 672
Query 442 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGGATGGGACGAAA 501
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 673 TCTATTCATACCGTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAA 732
Query 502 CTGGTCCTGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTT 561
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CTGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTT 792
Query 562 CAGTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGGGTACAAATACGATA 621
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 793 CAGTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACAGCGGGTACAAATATGATA 852
Query 622 TGTCAGTTGAAGAAGCTTCGGAGTTAGCAAGGAGATCGATCTACCATGCGACATTCCGTG 681
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 853 TGTCAGTTGAAGAAGCTTCCGAGTTAGCAAGGAGATCAATCTACCATGCGACATTCCGTG 912
Query 682 ATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAAC 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 ATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCCCGAAGGATGGACGAAAC 972
Query 742 TATCAGGAGATGATGTTGGGGAGCTACACTACCACTACTACCCCGTGGCACCAGCTATCG 801
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 973 TATCAGGAGATGATGTTGGGGAGCTACACTACCATTACTACCCCGTGGCACCAGCTACCG 1032
Query 802 CAGAACAAGTGATGGAGGAAGCAACAGCCGAGTAATAAA-CATGTTTCGTTTTCTAATCG 860
|||||||||| |||||||||||||||||||| ||| ||| | ||||| ||||||||||||
Sbjct 1033 CAGAACAAGTCATGGAGGAAGCAACAGCCGAATAA-AAATCCTGTTTAGTTTTCTAATCG 1091
Query 861 TTCACTCCCTTTTCT-GTTGTTGCATTTTGTGGTAGTACATACTGAGTTGTCTCTAGCTG 919
|||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1092 TTCACTCCCTTT-CTTGTTGTTGCATTTTGTGGTAGTATATACTGAGTTGTCTCTAGCTG 1150
Query 920 AAGCTTTGGTATTCTATTTTACTGATCTGAAATGTTGCTCGCA-ACTTATTCTCTATGAG 978
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 1151 AAGCTTTGGTATTCTATTTTACTGATCTGAAATGTTGCTCGCGGA-TTATTCTCTATAAG 1209
Query 979 ATTCTCTTTTTTCTGCAATCACAT 1002
||||||||||| ||||||||||||
Sbjct 1210 ATTCTCTTTTT-CTGCAATCACAT 1232
Score = 451 bits (244), Expect = 5e-126
Identities = 254/259 (98%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 1 GGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTTGAGACTTCCATGCCCATGATTGGAT 60
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 160 GGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTCGAGACTTCCATGCCTATGATTGGAT 219
Query 61 TTGGCTCGAGCAGTGATATGCTTGATGAGCTTTCTTCTGTGCCCTCGTTTGATCTACCCC 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 220 TTGGCTCGAGCAGTGATATGCTTGATGAGCTTTCTTCTGTACCCTCGTTTGATCTACCCC 279
Query 121 GTACAAAAGAGTTTGATGGATTTCAGAAAGAAGCTAAAGACATGTTGAAGCATGCAAAAG 180
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 280 GTACTAAAGAGTTTGATGGATTTCAGAAAAAAGCTAAAGACATGTTGAAGCATGCAAAAG 339
Query 181 GAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 GAACAACCACTCTCGCTTTTATCTTCAAAGGTGGTGTTATGGTCGCTGCTGATTCTCGGG 399
Query 241 CTAGCATGGGAGGATATAT 259
|||||||||||||||||||
Sbjct 400 CTAGCATGGGAGGATATAT 418
> AT3G26340.1 | Symbols: | N-terminal nucleophile aminohydrolases
(Ntn hydrolases) superfamily protein | chr3:9650417-9652897
REVERSE LENGTH=1113
Length=1113
Score = 913 bits (494), Expect = 0.0
Identities = 705/809 (87%), Gaps = 6/809 (1%)
Strand=Plus/Plus
Query 12 ATGAAGCTTGATACTAGTGGGTTTGAGACTTCCATGCCCATGATTGGATTTGGCTCGAGC 71
||||||||||| |||||||| || ||||| | ||||| ||||||| ||||| || | |
Sbjct 109 ATGAAGCTTGACACTAGTGGATTGGAGACAACTATGCCTGTGATTGGCTTTGGATCAAAC 168
Query 72 AGTGATATGCTTGATGAGCTTTCTTCTGTGCCCTCGTTTGATCTACCCCGTACAAAAGAG 131
||||| |||||||||| | |||| |||| || ||||||||||| || ||||| | ||
Sbjct 169 AGTGAGATGCTTGATGGGTTTTCGTCTGCACCTTCGTTTGATCTTCCTCGTACCACTGAT 228
Query 132 TTTGATGGATTTCAGAAAGAAGCTAAAGACATGTTGAAGCATGCAAAAGGAACAACCACT 191
|||||||| ||||||||| ||||| || ||| |||||| |||||| || ||||| ||
Sbjct 229 TTTGATGGGTTTCAGAAAAAAGCTGTGGAGATGGTGAAGCCTGCAAAGGGTACAACTACA 288
Query 192 CTCGCTTTTATCTTCAAAGG-TGGTGTTATGGTCGCTGCTGATTCTCGGGCTAGCATGGG 250
|| || |||||||| |||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 289 CTTGCGTTTATCTT-TAAGGAAGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGG 347
Query 251 AGGATATATTTCCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCGTATATGCTCGG 310
||||||||| || || |||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 348 AGGATATATCTCGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGG 407
Query 311 TACGATGGCTGGAGGAGCTGCTGACTGCCAATTCTGGCACAGAAATCTTGGAATTAAGTG 370
||| |||||||| || |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 408 TACAATGGCTGGTGGTGCTGCTGATTGTCAATTCTGGCACAGAAATCTGGGAATTAAGTG 467
Query 371 CCGTCTACATGAGCTGGCAAACAAGAGGAGAATCTCTGTGTCCGGAGCATCAAAACTACT 430
|||||||||||||||||||||||| |||||||||||||| || ||||| ||||| || ||
Sbjct 468 CCGTCTACATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCT 527
Query 431 TGCGAACATGCTCTATTCATACCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGG 490
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 528 TGCTAACATGCTCTATTCATATCGTGGAATGGGACTTTCTGTTGGCACAATGATTGCTGG 587
Query 491 ATGGGACGAAACTGGTCCTGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGG 550
|||||| ||||| || |||||| | |||||||| |||||||||||||||||||| |||||
Sbjct 588 ATGGGATGAAACAGGCCCTGGATTGTACTATGTTGACAACGAAGGAGGACGGCTTAAGGG 647
Query 551 AGACAGGTTTTCAGTCGGTTCTGGTTCACCATACGCTTACGGTGTACTGGACAGCGGGTA 610
|||||| || || |||||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 648 AGACAGATTCTCTGTCGGTTCAGGTTCACCATACGCTTATGGTGTTCTGGACAGCGGATA 707
Query 611 CAAATACGATATGTCAGTTGAAGAAGCTTCGGAGTTAGCAAGGAGATCGATCTACCATGC 670
||||| ||||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 708 CAAATTCGATATGTCGGTTGAAGAAGCCTCAGAGTTAGCAAGGAGATCCATCTACCATGC 767
Query 671 GACATTCCGTGATGGAGCCAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGTCC-CGAAG 729
||||||||||||||||| |||||||||||||||||||||||||||||||| || | |||
Sbjct 768 TACATTCCGTGATGGAGCTAGTGGTGGAGTTGCTAGCGTGTACCACGTTGGGCCGC-AAG 826
Query 730 GATGGACGAAACTATCAGGAGATGATGTTGGGGAGCTACACTACCACTACTACCCCGTGG 789
||||||||||||| || ||||| || ||||| |||||||| ||||| || ||||||||||
Sbjct 827 GATGGACGAAACTCTCTGGAGACGACGTTGGCGAGCTACATTACCATTATTACCCCGTGG 886
Query 790 CACCAG-CTATCGCAGAACAAGTGATGGA 817
| ||| | | ||| ||||| ||||||||
Sbjct 887 CTCCAATC-ACCGCGGAACATGTGATGGA 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50033210412
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5