BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471466
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13130.1 | Symbols: | Cellulase (glycosyl hydrolase family ... 2669 0.0
> AT1G13130.1 | Symbols: | Cellulase (glycosyl hydrolase family
5) protein | chr1:4474720-4477941 FORWARD LENGTH=1786
Length=1786
Score = 2669 bits (1445), Expect = 0.0
Identities = 1606/1686 (95%), Gaps = 2/1686 (0%)
Strand=Plus/Plus
Query 1 CAAGAAATGACATCAAAAGAGCCAAAACACATGTTTTGCGTTTTCCCATTCTTCTGTTTC 60
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1 CAAGAAATGACATCAAAAGAGCCAAAACACATGTTTTTCATTTTCCCATTCTTCTGTTTC 60
Query 61 TTCTTCTCATTCATTGCACAACACACCGTCCCAAACATGGCTTATCCTCTCTCCACAAGC 120
|||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TTCTTCTCCTTCATTGCACAAAACACCGTCCCAAACATGTCTTATCCTCTCTCCACAAGC 120
Query 121 TCCCGTTGGATCGTCGACGAGAATGGTCAACTGGTGAAGCTTATGTGTGCGAACTGGCCA 180
||||||||||||||||||||||| |||| || ||| ||||| |||||||||||||||||
Sbjct 121 TCCCGTTGGATCGTCGACGAGAACGGTCTACGGGTAAAGCTCGTGTGTGCGAACTGGCCA 180
Query 181 TCGCACCTCCAACCAGTTGTAGCGGAAGGGCTGAGCAAGCAACCAGCGGACGCAGTGGCC 240
|| |||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 181 TCACACCTCCAGCCCGTTGTAGCGGAAGGGCTGAGCAAACAACCAGTGGACGCAGTGGCC 240
Query 241 AAGAAAATAGTAGAAATGGGTTTCAATTGTGTTAGGTTAACTTGGCCGTTGGATTTGATG 300
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGAAGATAGTGGAAATGGGTTTCAATTGTGTTAGGTTAACTTGGCCGTTGGATTTGATG 300
Query 301 ACTAATGAGACATTAGCTAATAATGTCACAGTGAGACAATCTTTTCAAAGCCTTGGTCTT 360
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 ACTAATGAGACATTGGCTAATAATGTCACAGTAAGACAATCTTTTCAAAGCCTTGGTCTT 360
Query 361 AATGATGACATTGTTGGCTTCCAAACTAACAACCCTTCCATTATTGATCTCTCCCTCATT 420
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 361 AATGATGACATTGTTGGCTTCCAAACTAACAACCCCTCCATTATTGATCTCCCCCTCATT 420
Query 421 GAAGCTTATAAGATGGTAGTTACTACATTAGGAAACAACGACGTGATGGTGATATTAGAC 480
|||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GAAGCTTACAAGACGGTAGTTACTACATTAGGAAACAACGATGTGATGGTGATATTAGAC 480
Query 481 AACCACCTAACCAAACCAGGGTGGTGTTGCGCCAACGACGATGGTAACGGTTTCTTCGGT 540
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AACCACCTAACTAAACCAGGGTGGTGCTGCGCCAACGACGATGGTAACGGTTTCTTCGGT 540
Query 541 GACCAGTTTTTCGATCCTACCGTATGGGTTGCCGCTTTAAAGAAAATGGCGGCGACTTTC 600
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 541 GACCAGTTCTTCGATCCTACCGTATGGGTTGCCGCTTTAAAGAAAATGGCTGCGACCTTC 600
Query 601 GACGGTGTCTCTAATGTCGTTGGCATGAGTCTAAGGAATGAACTTAGAGGGCCTAAACAA 660
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACGGTGTCTCTAATGTTGTTGGCATGAGTCTAAGGAATGAACTTAGAGGGCCTAAACAA 660
Query 661 AACGTTAACGATTGGTTCAAGTATATGCAACAAGGAGCGGAAGCAGTTCATTCATCAAAC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 AACGTTAACGATTGGTTCAAGTATATGCAACAAGGAGCGGAAGCAGTTCATTCAGCAAAC 720
Query 721 AAGAAGGTACTTGTAATCCTCTCCGGTCTCAGCTTCGACGCCGATCTCTCCTTCGTTAGG 780
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 721 AACAAGGTACTTGTAATCCTCTCCGGTCTCAGCTTCGACGCTGATCTCTCCTTTGTTAGG 780
Query 781 TCTCGACCCGTAAACCTATCCTTCACCGGAAAACTTGTCTTCGAGCTCCATTGGTATTCT 840
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 TCTCGACCCGTAAAGCTATCCTTCACCGGAAAACTCGTCTTCGAGCTCCATTGGTATTCT 840
Query 841 TTCAGTGACGGAAACTCGTGGGCGGCCAATAACCCTAACGATATATGTGGTCGGGTTCTA 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 841 TTCAGTGACGGAAACTCGTGGGCTGCCAATAACCCTAACGATATATGTGGTCGAGTTCTA 900
Query 901 AACCGGATTGGAAACGGTGGCGGTTATCTCCTTAACCAAGGCTTTCCGTTGTTCCTCAGC 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 AACCGGATTGGAAACGGTGGCGGTTATCTCCTTAACCAAGGCTTTCCGTTGTTCCTAAGC 960
Query 961 GAATTCGGTATAGATGAAAGAGGAGTAAACACCAATGATAACCGGTATTTCGGGTGTGTA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 961 GAATTCGGTATAGATGAAAGAGGAGTAAACACCAATGATAACCGGTATTTTGGGTGTTTA 1020
Query 1021 ACCGGTTGGGCCGCGGAAAATGACGTCGATTGGTCGCTTTGGGCCCTTACTGGAAGCTAT 1080
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1021 ACCGGTTGGGCCGCGGAAAATGACGTTGATTGGTCGCTATGGGCTCTTACTGGAAGCTAT 1080
Query 1081 TACTTAAGACAAGGCGTGGTCGGGATGATTGAGTATTATGGTGTGTTGGATTCGGATTGG 1140
||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||
Sbjct 1081 TACTTAAGACAAGGCAAAGTCGGTATGAATGAGTATTACGGTGTGTTGGATTCGGATTGG 1140
Query 1141 ATAAGTGTTCGGAATTCGAGTTTCTTGCAAAAGATCTCTTTTCTTCAATCTCCGCTTCAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ATAAGTGTTCGGAATTCGAGTTTCTTGCAAAAGATCTCTTTTCTTCAATCTCCGCTTCAA 1200
Query 1201 GGACCGGGACCTCGAACTGATGCTTACAATCTGGTTTTCCATCCCTTAACCGGACTCTGC 1260
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 GGACCGGGCCCTCGAACTGATGCTTACAATCTGGTTTTTCATCCCTTAACCGGACTCTGC 1260
Query 1261 ATAGTACGATCTCTTGATGACCCAAAAATGCTTACTCTTGGTCCATGCAATAGCTCTGAA 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1261 ATAGTACGATCTCTTGATGACCCAAAAATGCTTACTCTTGGTCCATGCAATAGCTCCGAA 1320
Query 1321 CCATGGAGCTACACaaaaaaaGCACT-AAGAATTAAAGACCAGCATTTGTGTTTACAGAG 1379
||||||||||| || || ||||| || |||||| ||||||||||| ||||||||||||||
Sbjct 1321 CCATGGAGCTATACTAAGAAAGC-CTTAAGAATCAAAGACCAGCAATTGTGTTTACAGAG 1379
Query 1380 CAACGGACCAAAAAACCCGGTTACGATGACTAGGACGAGTTGTTCGACATCTGGATCAAA 1439
||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 1380 CAACGGACCAAAAAACCCGGTTACGATGACTCGGACTAGTTGTTCGACATCCGGATCAAA 1439
Query 1440 ATGGCAGACCATCTCGGCCTCTAGAATGCACTTATCTTCGACAACAAGTAACAAGACTTC 1499
||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 1440 ATGGCAGACCATCTCGGCCTCAAGGATGCACTTGGCTTCGACAACAAGTAACAAGACTTC 1499
Query 1500 TCTTTGCCTTGACGTAGACACAGCCAACAATATCGTTGCTAATGCTTGCAAATGTCTGAG 1559
||||||||||||||| |||||||| |||||| |||| |||||||||||||| ||||||||
Sbjct 1500 TCTTTGCCTTGACGTGGACACAGCGAACAATGTCGTGGCTAATGCTTGCAAGTGTCTGAG 1559
Query 1560 CAAAGACAGCTCGTGTGAGCCAATGAGCCAATGGTTTAAGATTATTAAAGCTACAAGGCC 1619
|||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1560 CAAAGACAAATCGTGTGAGCCAATGAGCCAATGGTTTAAGATTATCAAAGCCACAAGGCC 1619
Query 1620 ATTGAAGAGCTCGAGATTGCATAAAGAGATCTCGTCTATGTTGTAAAGCTTTTTGACTTG 1679
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1620 ATTGAAGAGCTCGAGATTGTATAAAGAGATCTCGTCTATGCTGTAAAGCTTTTTGACTTG 1679
Query 1680 CTATAA 1685
||||||
Sbjct 1680 CTATAA 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83282704155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5