BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471469
Length=2641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13160.1 | Symbols: | ARM repeat superfamily protein | chr1... 4189 0.0
AT4G31520.1 | Symbols: | SDA1 family protein | chr4:15278281-1... 732 0.0
> AT1G13160.1 | Symbols: | ARM repeat superfamily protein | chr1:4484584-4488577
FORWARD LENGTH=2654
Length=2654
Score = 4189 bits (2268), Expect = 0.0
Identities = 2511/2627 (96%), Gaps = 21/2627 (1%)
Strand=Plus/Plus
Query 23 CAAAACCTCTGAAAATGGCCGG-ATCTCTAGGTTTAACGCCGGAATCCTTAAAGGCATCT 81
||||||||| || |||| |||| | ||||||||||||||||| ||||||||||||||||
Sbjct 37 CAAAACCTCCGATAATGTCCGGCA-GTCTAGGTTTAACGCCGGCATCCTTAAAGGCATCT 95
Query 82 GGCCGGAGCTCAGAGAATCTCAGCCTTCTTATCCTTCAAGGTAAAATCAAACGTGACCCA 141
||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 96 GGCCGGAGCTCCGAGAATGTCAGTCTTCTTACCCTTCAAGGTAAAATCAAACGTGACCCA 155
Query 142 GAAGGTTACGAAACAGAGCTCCAGTTGATTTACAAACAGTTCAAAACCTCCGTCGATCTC 201
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 156 GAAGGTTACGAAACAGAGCTCCAATTGATTTACAAACAGTTCAAAACCTCCGTCGATCTC 215
Query 202 TTCCA-GCAACAAGCAGCTCTCAGTTTCTCCTCCGTTGGTGGCATTGGATCTGACCCTTC 260
||||| | ||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 216 TTCCATG-AACTAGCAGCTCTCAGTTTCTCCTCCACTGGTGGCATTGGCTCTGACCCTTC 274
Query 261 TGTTTCCAAAGACCTCGGTGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTTTACCC 320
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TGTTTCGAAAGACCTCGGCGACCGTGCCATGTTTCTAGCTCACGTTACTCCCTTTTACCC 334
Query 321 GAAGCAACTCTCGGAGTTTCCAGCTCAATTGACTGACTTACTCCGTACTTCTTGCTTAGC 380
|||||||||| ||| ||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 335 GAAGCAACTCGCGGCGTTTCCAGCTCAATTAACTGGTTTACTCCGTACTTCGTGCTTAGC 394
Query 381 AATGCCCTCGGGTCTTCGAAACCATGTTGCACAAGCTCTGATTCTTCTAATGAATCGAAA 440
||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 395 TATGCCCTCGGGGCTTCGAAACCATATTGCACAAGCTCTGATCCTTCTAATGAATCGAAA 454
Query 441 GAGTCTTGTCATCGAGGATTTGCTGGCTTTATTTCTGGATATTCAGACTCTTGGTGACAA 500
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 455 GAGTCTTGTCATCGAGGATTTGCTGGCTTTGTTTCTGGATATTCAGACTCTTGGTGACAA 514
Query 501 AAACCTGCGAGCTCTTGCTTTTGGTCACATTGTTCAAACCATTCGTAAGATGAGTATCAC 560
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AAACCTGCGAAATCTTGCTTTTGGTCACATTGTTCAAACCATTCGTAAGATGAGTATCAC 574
Query 561 TGATCCCAAGCACAAATCACTTCAGAAGATTGTGATCTCTATGTTAGAGCAAGAAGATGA 620
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 575 CGATCCCAAGCACAAATCACTTCAGAAGATTGTAATCTCTATGTTGGAGCAAGAAGATGA 634
Query 621 AGCAAAGGCTAAGAGAGCACTTGCTACTCTCTGTGCGCTACACAAGAAAAAGATATGGCT 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 635 AGCAAAGGCTAAGAGAGCACTTGCTACTCTCTGTGCGCTACACAAGAAAAAGATCTGGCT 694
Query 681 TGGTGATAAAAATGAAAGAGTTGCAATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TGGTGATAAAAATGAAAGAGTTGCAATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACC 754
Query 741 TAGGATAATGATCTCTGCTCTTCGATTTCTTCTTGACTATGAGAACATTGACGATGATGA 800
|||||| ||||| || |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 755 TAGGATTATGATTTCCGCTCTTCGGTTTCTTCTTGATTATGAGAACATAGACGATGATGA 814
Query 801 CGATAGTGATGCTGAAAGCGATGATGACGAGGA-TAATAAGAAAATAGATCAGGTTGTGA 859
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 815 CGATAGTGATGCTGAAAGCGATGATGACGAGGAGTCA-AAGAAAATAGATCAGGTTGTGA 873
Query 860 TTAATCGACAGGCTATTTACAAGGCAAACAACAAAGGTACATCCTCTAGCAAGAAGAAAA 919
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TTAATCGACAGGCTGTTTACAAGGCAAACAACAAAGGTACATCCTCTAGCAAGAAGAAAA 933
Query 920 AGCAAGCAAAACTACAGCGTGCAGTGAAAAGTATTAAAAGAAAGCAGCGTTCGTCGTCTG 979
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 AGCAAGCAAAACTTCAGCGTGCAGTGAAAAGTATTAAAAGAAAGCAGCGTTCGTCGTCTG 993
Query 980 AGAACACCACTTCAACATTTTCACCTCTTAATCATTTAAATGATGCGCAGAAATTCGCAG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 AGAACACCACTTCAACATTTTCACCTCTTAATCATTTAAATGATGCGCAGAAATTCGCAG 1053
Query 1040 AGAGATTGTTTTCCCGTCTTCAGACCATCAAGGGCTCTGGTGAACGTGTTGAGACCAGGT 1099
||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1054 AGAAATTGTTTTCCCGTCTTCAGACCATCAAGGGCAGTGGTGAACGTGTTGAGACTAGGT 1113
Query 1100 TGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCATTTGCTAAGTT 1159
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1114 TGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCATTTACTAAGTT 1173
Query 1160 TTTATTCTTTTCTTCAAAACTACGCTATGCCGCATGTAAAGGACATTACACAAATACTTG 1219
| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1174 TCTATCCTTTTCTTCAAAACTATGCTCTGCCGCATGTAAAGGACATTACACAAATACTTG 1233
Query 1220 CAGCAGCAGTTCAATCTTGCCATGATGGGGTTCCTTCTGATGCTGTGGAGCCACTGTTCA 1279
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1234 CAGCAGCAGTTCAATCTTGCCACGATGGGGTTCCTTCTGATGTTGTGGAGCCACTGTTCA 1293
Query 1280 AGCAAATTGTGAATCAGTTTGTACACGACAAGTCACGTCCTGAGGCTATTGCTGTCGGAC 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 AGCAAATTGTGAATCAGTTTGTACACGACAAGTCACGTCCTGAGGCTATTGCTGTCGGAC 1353
Query 1340 TCAATGTGGTACGAGAAATGTGCCTGAGGATTCACGACTTGATGACAGAAGAGTTGCTGC 1399
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1354 TCAATGTGGTGCGAGAAATGTGCCTGAGGGTTCACGACTTGATGACAGAAGAGTTACTGC 1413
Query 1400 AAGATCTTGCTCTGTATAAAAAGTCCCATGAAAAAGCCATCTCAGCAGCAGCTCGTTCCC 1459
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1414 AAGATCTTGCTCTGTATAAAAAGTCCCATGAAAAAGCCATCTCAGCAGCAGCACGTTCCC 1473
Query 1460 TCATAGCATTGTTCAGAGAGATCAACCCTTCGCTTCTGGTGAAAAAAGATCGTGGCCGTC 1519
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1474 TCATAGCATTGTTCAGAGAGATCAACCCTTCGCTTCTGGTTAAAAAAGATCGTGGCCGTC 1533
Query 1520 CTGGAGCTACCAT-TGCAAAACCTAAACAATATGGGGAGTCTAATGTCTTCAGCAATGTT 1578
||||||||||| | | || | |||||||| ||||| ||||||||||||||||||||||||
Sbjct 1534 CTGGAGCTACCGTCTTCATA-CCTAAACATTATGGAGAGTCTAATGTCTTCAGCAATGTT 1592
Query 1579 CCCAATGTTGAATTATTGCAAGAAAGTGATAATGAGAGTGGCTCTGATGGTGATCAAGAC 1638
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 CCTAATGTTGAATTATTGCAAGAAAGTGATAATGAGAGTGGCTCTGATGGTGATCAAGAC 1652
Query 1639 GATGATGACGTGGAGTTGCCTATCGGCGATGAAGTTGAGCAGGAGGTGATACCTGATGAT 1698
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 1653 GATGATGGCGTGGAGTTGCCTATCGGCGATGATGTTGAGCAGGAGCTGATACCTGGTGAT 1712
Query 1699 TGTGGAAGCGAGGACGAAGCTGAAGAAGATTCCAATGATGGTGATGATATGAATAACACT 1758
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 TGTGGAAGCGAGGACAAAGCTGAAGAAGATTCCAATGATGGTGATGATATGAATAACACT 1772
Query 1759 GAAGATGATAGTGATATTGATACTTCAATAGGTGGTGATGAAGATGAAGAGGTGAATGAC 1818
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 GAAGACGATAGTGATATAGATACTTCAATAGGTGGTGATGAAGATGAAGAGGTGAATGAC 1832
Query 1819 AGTGATGAAGCTGATACAGATTCGGAAAATGAGGAAATCGAAAGCGAAGAAGACGATGGA 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1833 AGTGATGAAGCTGATACAGATTCGGAAAATGAGGAAATCGAAAGCGAAGAAGAGGATGGA 1892
Query 1879 GAAGCTTCTGATTCTTCTGTAGAGGATAATGGAAACAAAGAGAAAGCTAAGGGCAAGAAG 1938
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1893 GAAGCTTCTGATTCTTCTGTAGAGGATAGTGGAAACAAAGAGAAAGCTAAGGGCAAGAAG 1952
Query 1939 AGGAAGATTGTAGATTTTGATGCGAATCTTCTCTCTGCTGATACAAGCCTCCGAGCACTC 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 AGGAAGATTGTAGATTTTGATGCGAATCTTCTCTCTGCTGATACAAGCCTCCGAGCACTC 2012
Query 1999 AAGAGATAT-GCAGAAGCAAAGAACGAAAAACCATCTTTTGATGAAAGTGATGGCATACT 2057
||||||| | |||||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct 2013 AAGAGAT-TCGCAGAAGCAAAGAACGAAAAGCCTTCTTTTGATGAAGGTGATGGCATACT 2071
Query 2058 TTCGAATGAGGACTTCCGAAAAATCAAAGA-ACTTCAGGCAAAGAAGGAAGCAAAAATTG 2116
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2072 TTCGAATGAGGACTTCCGAAAAATCAAA-ACACTTCAGGCAAAGAAGGAAGCAAAAATTG 2130
Query 2117 CATTGGCTCGAAAAGGATTCAAGGTTCCGGATTCTGATCAGCTAAGCAAGAAGCGGGTCG 2176
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2131 CATTGGCTCGAAAAGGATTCAAGGTTCCGAATTCTGATCAGCTAAGCAAGAAGCGGGTCG 2190
Query 2177 ATCCAGCCAAACTTGAAGCTCACATAAGGCATAAACTAACAAAAGAACAAAGACTGGAAT 2236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2191 ATCCAGCCAAACTTGAAGCTCACATAAGGCATAAACTAACAAAGGAACAAAGACTGGAAT 2250
Query 2237 TAGTTAAAGCGGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGA 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 TAGTTAAAGCGGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGA 2310
Query 2297 AGAAGACGGGAGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTG 2356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2311 AGAAGACTGGAGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTG 2370
Query 2357 CAATAAGATCAAAGGCTGGGAAATCAAAGCGAACTAAGAAGATGAAGAATAGCATCAGCG 2416
||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||
Sbjct 2371 CAATAAGATCAAAGGCTGGTAAATCAAAACGAATTAAGAAGATGAAGAATAGCATCAGCG 2430
Query 2417 GAAGCCAGTTTAGAGGAAGGAAAGCTTGGAAGTGAAAAAATGACCTACA-CTCTTAATTC 2475
||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||
Sbjct 2431 GAAGCCAGTTTAGAGGAAGGAAAGCTTGGAAGTGAAAAAATGACCAA-ATCTCTCAATTC 2489
Query 2476 TTCGGTCTCAAAACTGA-ACACAGTTTTGTTTTGGTTCATTTTTTGCATAATTATGTTTT 2534
||| ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2490 TTCCGTCTCAAAACT-ATACACAGTTTTGTTTTGGTTCAGTTTTTGCATAATTATGTTTT 2548
Query 2535 GTCCTATGCCTGCTGCAGTTTTGATATTGAGGTCTCAGCACAAAACGTTGTCCTTTTTCC 2594
|| || || | ||||||||||||||||||||| || ||| |||| ||||| |||||||
Sbjct 2549 GTTCTTTG--T-CTGCAGTTTTGATATTGAGGTATCGGCATAAAA--TTGTCGTTTTTCC 2603
Query 2595 TGTCATCATACGTTTTATTTACAGTGGGAGTAATAAATTCCTGTTTT 2641
||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 2604 TGTCATCATACGTTTTATTTACAGTGGGATTAATAAATTACTATTTT 2650
> AT4G31520.1 | Symbols: | SDA1 family protein | chr4:15278281-15281739
REVERSE LENGTH=2097
Length=2097
Score = 732 bits (396), Expect = 0.0
Identities = 639/749 (85%), Gaps = 46/749 (6%)
Strand=Plus/Plus
Query 1708 GAGGACGAAGCTGAAGAAGATTCCAATGATGGTGATGATATGAATAACACTGAAGATGAT 1767
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1390 GAGGACGAGGCTGAAGAAGATTCTAATGATGGTGATGATATGAATAACACTGAAGATGAT 1449
Query 1768 AGTGATATTGATACTTCAATAGGTGGTGATGAAGATGAAGAGGTGAATGACAGTGATGAA 1827
| | ||| | || |||| |||||||| |||||| ||||||||||||||||
Sbjct 1450 A---CT-TTG----GT---TA-GTGGAGATGAAGAGGAAGAGAAGAATGACAGTGATGAA 1497
Query 1828 GCTGATACAGATTCGGAAAATGAGGAAATCGAAAGCGAAGAAGACGATGGAGAAGCTTCT 1887
|| || || |||| || || ||| || || ||||| || | ||||||||||||
Sbjct 1498 GCCGAGACTGATT-GG-----GA--AAA-CG-AA--GAAGATGA--A-GGAGAAGCTTCT 1542
Query 1888 GATTCTTCTGTAGAGGATAATGGAAACAAAGAGAAAGCTAAGGGCAAGAAGAGGAAGATT 1947
| || |||| || |||||||| ||||||||| ||||| ||||| |||||| ||
Sbjct 1543 G-------TG--GAGGGTAGTGGAAACAGAGAGAAAGCAAAGGGGAAGAAAAGGAAG-TT 1592
Query 1948 -GTAGATTTTGATGCGAATCTTCTCTCTGCTGATACAAGCCTCCGAGCACTCAAGAGATA 2006
|||||||||||||||| ||| ||| |||||||||||||||| |||||||| |||||||
Sbjct 1593 AGTAGATTTTGATGCGAGTCTCCTCGCTGCTGATACAAGCCTACGAGCACTAAAGAGATG 1652
Query 2007 TGCAGAAGCAAAGAACGAA-AAACCATCTTTTG-ATGAAAGTGATGGCATACTTTCGAAT 2064
||||| ||| ||| ||| | | ||||||||| | ||||| |||||||||||||| |||
Sbjct 1653 CGCAGAGGCAGAGAGGGAACAGA-CATCTTTTGCA-GAAAGAGATGGCATACTTTCCAAT 1710
Query 2065 GAGGACTTCCGAAAAATCAAAGAACTTCAGGCAAAGAAGGAAGCAAAAATTGCATTGGCT 2124
|||||||||||||||||||||||| || ||| ||||||||| || ||| |||||||||||
Sbjct 1711 GAGGACTTCCGAAAAATCAAAGAAGTTAAGGGAAAGAAGGATGCGAAACTTGCATTGGCT 1770
Query 2125 CGAAAAGGATTCAAGGTTCCGGATTCTGATCAGCTAAGCAAGAAGCGGGTCGATCCAGCC 2184
||||||||||| || ||||||||||||||| ||||||| ||||||| |||| ||||||||
Sbjct 1771 CGAAAAGGATTGAAAGTTCCGGATTCTGATAAGCTAAGTAAGAAGCTGGTCAATCCAGCC 1830
Query 2185 AAACTTGAAGCTCACATAAGGCATAAACTAACAAAAGAACAAAGACTGGAATTAGTTAAA 2244
||||||||||||||||||||||| ||||||| ||||||| |||| ||||| |||||||||
Sbjct 1831 AAACTTGAAGCTCACATAAGGCAGAAACTAATAAAAGAAGAAAGGCTGGAGTTAGTTAAA 1890
Query 2245 GCGGGTAGGGAGGACAGAGGGAAATACAAATCCAAGGCTGCCGTCAAACAGAAGAAGACG 2304
||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||
Sbjct 1891 GCGGGTAGGGAGGACCGAGGGAAATACAAATCCAAGACTGCCATCAAGCAGAAGAAGACC 1950
Query 2305 GGAGGATCAAGCAATAAACAGAAGGAGCACAGGAAGAATATGCCTCTTGCTGCAATAAGA 2364
|||||||| ||||||| ||||||||| |||| ||||||||||||||| |||||| |||||
Sbjct 1951 GGAGGATCGAGCAATAGACAGAAGGAACACAAGAAGAATATGCCTCTCGCTGCAGTAAGA 2010
Query 2365 TCAAAGGCTGGGAAATCAAAGCGAA-CTAAGAAGATGAAGAATAGC-ATCAGCGGAAGCC 2422
||||||||||||||| |||||||| | ||||| |||||||||||| | |||||||||||
Sbjct 2011 TCAAAGGCTGGGAAAGCAAAGCGAGTC-AAGAAAATGAAGAATAGCCA-CAGCGGAAGCC 2068
Query 2423 AGTTTAGAGGAAGGAAAGCTTGGAAGTGA 2451
|||| ||||||||||||||||||||||||
Sbjct 2069 AGTTCAGAGGAAGGAAAGCTTGGAAGTGA 2097
Score = 555 bits (300), Expect = 1e-156
Identities = 451/525 (86%), Gaps = 6/525 (1%)
Strand=Plus/Plus
Query 289 ATGTTTCTAGCTCACGTTACTCCCTTTTACCCGAAGCAACTCTCGGAGTTTCCAGCTCAA 348
|||||||| ||||| || ||||| ||||| ||||| || ||| | | ||||||||||||
Sbjct 1 ATGTTTCTCGCTCATGTCACTCCGTTTTATCCGAACCAGCTCGCCGCTTTTCCAGCTCAA 60
Query 349 TTGACTGACTTACTCCGTACTTCTTGCTTAGCAATGCCCTCGGGTCTTCGAAACCATGTT 408
|||||||| ||||||||||| || ||| | |||||||| ||||| ||||| |||| |||
Sbjct 61 TTGACTGATTTACTCCGTACCTCATGCCTGGCAATGCCGTCGGGGCTTCGGTACCAAGTT 120
Query 409 GCACAAGCTCTGATTCTTCTAATGAATCGAAAGAGTCTTGTCATCGAGGATTTGCTGGCT 468
|| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 121 GCGCAATCTCTGATTCTTCTTATGAATCGAAAGAGTCTTGTCATCGAGGATTTGTTAGCT 180
Query 469 TTATTTCTGGATATTCAGACTCTTGGTGACAAAAACCTGCGAGCTCTTGCTTT-TGGTCA 527
| ||||| |||||||| ||||||||||| |||||| ||||| |||||||| | |||
Sbjct 181 CTGTTTCTAGATATTCAAACTCTTGGTGATAAAAACTTGCGAAAGCTTGCTTTCTC-TCA 239
Query 528 CATTGTTCAAACCATTCGTAAGATGAGTATCACTGATCCCAAG-CACAAATCACTTCAGA 586
|||||||||||||||||||| ||||||||||||||||| ||| |||||||| ||||| |
Sbjct 240 TATTGTTCAAACCATTCGTAAAATGAGTATCACTGATCC-AAGGCACAAATCTCTTCACA 298
Query 587 AGATTGTGATCTCTATGTTAGAGCAAGAAGATGAAGCAAAGGCTAAGAGAGCACTTGCTA 646
||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||| ||
Sbjct 299 AGATTGTTTTCTCTATGTTGGAGCAAGAAGATGAAACCAAGGCTAAGAGAGCACTTGTTA 358
Query 647 CTCTCTGTGCGCTACACAAGAAAAA-GATATGGCTTGGTGATAAAAATGAAAGAGTTGCA 705
| || |||| ||| ||||||||||| | | ||| ||||||||||| |||| ||||| |||
Sbjct 359 CCCTTTGTGAGCTTCACAAGAAAAAAG-TCTGGTTTGGTGATAAACATGACAGAGTAGCA 417
Query 706 ATTGCGATTTGTGAAGCCTGCTTTCATTCTTCACCTAGGATAATGATCTCTGCTCTTCGA 765
||||| ||||||||||||||||||||| ||||||||||||| | ||| ||| | |||||
Sbjct 418 ATTGCCATTTGTGAAGCCTGCTTTCATACTTCACCTAGGATCAGGATATCTTCCCTTCGG 477
Query 766 TTTCTTCTTGACTATGAGAACATTGACGATGATGACGATAGTGAT 810
|||||||||||||| || |||||| ||||||| || |||||||||
Sbjct 478 TTTCTTCTTGACTACGACAACATTAACGATGAGGATGATAGTGAT 522
Score = 542 bits (293), Expect = 8e-153
Identities = 474/556 (85%), Gaps = 33/556 (6%)
Strand=Plus/Plus
Query 1090 GAGACCAGGTTGATGATGATTAAAGTTATTGCTCGCACAATTGGTCTTCACAAGTTGCAT 1149
||||||||||||||||| || ||||||||||| || |||||||||||||||||||||| |
Sbjct 802 GAGACCAGGTTGATGATTATAAAAGTTATTGCACGAACAATTGGTCTTCACAAGTTGCTT 861
Query 1150 TTGCT-AAGTTTTTATTCTTTTCTTCAAAAC-TACGCT-ATGCCGCATGTAAAGGACATT 1206
|| | || |||||| ||| ||||| || | || ||| | | | |||||||||||||
Sbjct 862 TTATTCAA-ATTTTATACTTATCTTC-AAGCGTATGCTAAGGATG-GTGTAAAGGACATT 918
Query 1207 ACACAAATACTTGCAGCAGCAGTTCAATCTTGCCATGATGGGGTTCCTTCTGATGCTGTG 1266
|||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||
Sbjct 919 ACACAAATACTTGCAGCAGCAGTTCAGGCTTGCCATGATGGGGTACCTTCGGATGCCGTG 978
Query 1267 GAGCCACTGTTCAAGCAAATTGTGAATCAGTTTGTACACGA-CAAGTCACGTCCTGAGGC 1325
|||||||||||||||||||| |||||| ||||| ||||||| | ||| |||| |||||
Sbjct 979 GAGCCACTGTTCAAGCAAATAGTGAATAAGTTTTTACACGATCGC-TCAAGTCCGGAGGC 1037
Query 1326 TATTGCTGTCGGACTCAATGTGGTACGAGAAATGTGCCTGAGGATTCACGACTTGATGAC 1385
|||| |||||| ||||||||||||||||||||||| ||| ||||||| ||| ||||||||
Sbjct 1038 TATTCCTGTCGCACTCAATGTGGTACGAGAAATGTTCCTTAGGATTCCCGAGTTGATGAC 1097
Query 1386 AGAAGAGTTGCTGCAAGATCTTGCTCTGTATAAAA---A------GT-CC---C--AT-G 1429
|||||| |||||||| |||||||||| |||||||| | || || | || |
Sbjct 1098 AGAAGACTTGCTGCATGATCTTGCTCAGTATAAAACGGATAAAAAGTACCGTACCCATAG 1157
Query 1430 AAAAAGCCATCTCAGCAGCAGCT-CGTTCCCTCATAGCATTGTTCAGAGAGATCAACCCT 1488
|||| ||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1158 AAAA-GCCATCTCAGCAGCATCTGC-TTCCCTCATAGCATTGTTCAGAGAGATCAACCCT 1215
Query 1489 TCGCTTCTGGTGAAAAAAGATCGTGGCCGTCCTGGAGCTACCATTGCAAAACCTAAACAA 1548
| ||| || ||||||||||| |||||||||||||||| | ||||||| | ||||||| ||
Sbjct 1216 TTGCTACTAGTGAAAAAAGACCGTGGCCGTCCTGGAGGTCCCATTGCCAGACCTAAA-AA 1274
Query 1549 -TATGGGGA-GTCTAATGTCTTCAGCAATGTTCCCAATGTTGAATTATTGCAAGAAAGTG 1606
||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1275 GTATGGAGAAGTC-AATGTCTTCAGCAATGTTCCCAATGTTGATTTATTGCAAGAAAGTG 1333
Query 1607 ATAATGA-GA-GTGGC 1620
|| |||| || |||||
Sbjct 1334 ATGATGATGAAGTGGC 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131136389002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5