BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471470
Length=2899
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13170.2 | Symbols: ORP1D | OSBP(oxysterol binding protein)-... 2606 0.0
> AT1G13170.2 | Symbols: ORP1D | OSBP(oxysterol binding protein)-related
protein 1D | chr1:4488533-4492587 REVERSE LENGTH=3116
Length=3116
Score = 2606 bits (1411), Expect = 0.0
Identities = 1640/1745 (94%), Gaps = 38/1745 (2%)
Strand=Plus/Plus
Query 15 tctctctctc-tctctctGC--AGTCTCTGCACACTGCACAAACAC---AAATTTTTACT 68
|||||||||| ||||| ||| |||||||||||||||||||||||| ||| |||||||
Sbjct 31 TCTCTCTCTCTTCTCTATGCAGAGTCTCTGCACACTGCACAAACACAAAAAAATTTTACT 90
Query 69 GACAACTGCCTTAAATTGGATCTGTGAGCCCTCCATTATCTGCTCTCTCTGCTTTTCGtt 128
||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 91 GACAACTGCCTTAAATTGGATCTGTGAGCCCTCCATT-GCTGCTCTCTCTGCTTCTCTTT 149
Query 129 ttttttCTAGTTCAAACTCAACA-CTCTTCGATCTCCATCACCGGATCTCAGATTCTTCA 187
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 150 TTTTTTCTAGTTCAAACTCAACATTTCTTCGATCTCCTTCACCGGATCTCAGATTCTTCA 209
Query 188 GCTGGAGCTT-GATCACCGGTTGGTGTTTTAGGATCTGGCTTCAAATGTTCGATTCGTAG 246
|||||| ||| |||||||||||| ||||||||||||| ||||| |||||||||||| |||
Sbjct 210 GCTGGA-CTTAGATCACCGGTTGTTGTTTTAGGATCTAGCTTC-AATGTTCGATTCTTAG 267
Query 247 TA---G--TTTTGTGATCAATGTTG--TTTGATTCGATTGTTATGAATCCTCTTTGCTGC 299
|| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 268 TAGCTGTTTTTTGTGATCAATGTTGTTTTTGATTCGATTATTATGAATCCTCTTTGCTGC 327
Query 300 ATTGCTCCGGTTTCGATTGATGACCGGACTAATCCCGTCGTAGCCAAATCATCAGGGCTT 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 328 ATTGCTCCGGTTTCGATTGATGACCGGACTAATCCCGTCGTAGCGAAATCAT-----C-- 380
Query 360 GAATC-TC-TTCCGGTAACGAA---A-TCTGG-TAGTAACCACGCTTCTAAGCCGTCGTT 412
||||| || || || |||| | || || |||||| ||||||||||||||||||||
Sbjct 381 GAATCATCATTTAGGGCTCGAAGCTATTCCGGTTAGTAAACACGCTTCTAAGCCGTCGTT 440
Query 413 TTCGACTCAGGCGTCTTGGATCAGCCAAGATCAG-TTAGAGAGACTCTCTTCTGAAGTAG 471
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 441 TTCGACTCAGGCGTCTTGGATCAGCCAAGATCAGCTT-GAGAGACTCTCTTCTGAAGTAG 499
Query 472 TAGATGACGTGAATCTCGAGGGGAAAGATGCGTCTTCTTCTTCTTCTAAAGGATGTTTCT 531
|||| ||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 500 TAGACGACGTCAATCTCGATGGGAAAGATGCTTCTTCTTCTTCTAATAAAGGATGTTTCT 559
Query 532 TCTTTGGGAA-TGGCGTCGGTGCTGGAGCTGGTGTCGCTGGGATCATGTATAAATGGGTG 590
|||||||||| | ||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 560 TCTTTGGGAACT-GCGTCGGTGCTGGAGCTGGAGTTGCTGGGATCATGTATAAGTGGGTG 618
Query 591 AACTATGGGAAAGGGTGGAGAGCTAGATGGTTTGAGCTGGAGGACGGTGTTTTGTCGTAT 650
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 619 AACTATGGGAAAGGATGGAGAGCTAGATGGTTTGAGCTGGAGGATGGTGTTTTGTCGTAT 678
Query 651 TATAAGATCCATGGACCTGATAAGATTGTGATGAATCCGTCTAGAGATAAGGGTGTTAGG 710
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 679 TATAAGATCCATGGACCTGATAAGATTGTGATGAATCCGTCTAGAGAGAAAGGTGTTAGA 738
Query 711 GTGATTGGTGAGGAATCTGTGAGGTACATTAGGAAAGCTAGCTGCGGTAGTAGCAACCGC 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GTGATTGGTGAGGAATCTGTGAGGTACATTAGGAAAGCTAGCTGCGGTAGTAGCAACCGA 798
Query 771 CTTGGAGCTTCTGCAGTAGCAGCTTCAAGGCCTTGTAAACCATTCGGAGAAATACATTTG 830
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 CTTGGAGCTTCTGCTGTAGCAGCTTCAAGGCCTTGTAAACCATTCGGAGAAATACATTTG 858
Query 831 AAGGTTTCTTCGATTCGAGCGAGCAAATCTGATGACAAAAGGCTTGCTATATTTACTGGT 890
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 859 AAGGTTTCTTCGATTCGAGCGAGCAAGTCTGATGACAAAAGGCTTGCTATATTTACTGGT 918
Query 891 ACAAAGACTCTTCATTTACGTTGTGTATCGAGAGAGAATAGAGCAGCCTGGGTAGAAGCT 950
|||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||
Sbjct 919 ACAAAGACTCTTCATTTACGTTGTGTTTCGAAAGAGAATAGAGCGGCTTGGGTAGAAGCT 978
Query 951 TTGCAGGTGGCCAAGGATCTTTTTCCTAGAGTGTCCAGCGGCGACATCCTACCCTCAGAA 1010
|| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 979 TTTCAGGTGGCCAAGGATCTTTTTCCTAGAGTGGCCAGTGGCGACATCCTACCCTCAGAA 1038
Query 1011 GATGCGGTTGTTTCGACTGAGAAGTTGCGTGAAAAGTTACTGCAGGAAGGCGTTGGTGAG 1070
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GATGCGGTTGTTTCTACCGAGAAGTTGCGTGAAAAGTTACTGCAGGAAGGCGTTGGTGAG 1098
Query 1071 ACAGTAGTAAAAGATTGTGAAGCCATTATGCTTTCGGAAGTTTCTGTGCTGCAGAACCGG 1130
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1099 ACAGTGGTGAAAGATTGTGAAGCCATTATGCTTTCGGAAGTTTCTGTGTTGCAGAACCGG 1158
Query 1131 TTGAAGGTTCTCACACAGAAACACATTATACTACTGGATACACTGAGACAGTTAGAGACC 1190
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TTGAAGGTTCTCACACATAAACACATTATACTACTGGATACACTGAGACAGTTAGAGACT 1218
Query 1191 GAGAAAATAGAGCTGGAAACTACTGTTGTTGATGAAACAAAGGAGCATGACTCTTGCTGT 1250
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 1219 GAGAAAATAGAGCTGGAAGCTACCGTCGTTGATGAAACAAAGGAGCATGACTCTTGCTGT 1278
Query 1251 GGACAGGGAAGACGATTTAGTGATTTCTATTCAGTGATGTCAGAGGTATCTGCAAGCGAT 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GGACAGGGAAGACGATTTAGTGATTTCTATTCAGTGATGTCAGAGGTATCTGCAAGCGAT 1338
Query 1311 TCTGAGGCAGATAATGAAAGTCAAGATGGAGCAGATGTTGAATCTGAGGAAGATGATGTA 1370
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1339 TCTGAGGCAGATAATGAAAGTCAAGATGGAGCAGATGTTGAATCTGATGAAGATGATGTA 1398
Query 1371 GCTTTCTTTGATACAAATGATATCCTATCAGCCGAAGCACTGAGAAGTGCTTCTTACCGT 1430
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1399 CCTTACTTTGATACAAATGATATCCTATCAGCCGAAGCAATGAGAAGTGCTTCTTACCGT 1458
Query 1431 AGCAGAGAAGCTGAAGGAAATGGATCTATCTACGATAAAGACCCCTTCTTTTCTGACCG- 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1459 AGCAGAGAAGCTGAAGGAAATGGATCTATCTACGATAAAGACCCCTTCTTTTCAGACCGT 1518
Query 1490 CTTGCAAGTTCCCGCTAGAATTCCACAGTATCCATATGTCAGAAGAAGGGATAACCTACC 1549
|| |||| |||||||||| || || ||||||||||||||||||||||||||||| ||||
Sbjct 1519 CT-GCAAATTCCCGCTAGGATCCCGCAGTATCCATATGTCAGAAGAAGGGATAATTTACC 1577
Query 1550 GGAACCAAAGGAGAAGGAAAAGCCAGTTGGATTATGGTCAATCATCAAAGAAAACATTGG 1609
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 GGAGCCAAAGGAGAAGGAAAAGCCAGTTGGATTATGGTCAATCATCAAAGAAAACATTGG 1637
Query 1610 CAAAGACTTGTCTGGAGTTTGTCTCCCCGTATATTTTAATGAGCCTCTCTCTTCTCTGCA 1669
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1638 CAAAGACTTGTCTGGAGTTTGTCTCCCTGTATATTTTAATGAGCCTCTCTCTTCTCTGCA 1697
Query 1670 GAAGTGCTTTGAGGATTTGGAGTACTCATACTTGATAGACAGAGCACTTGAGTGGGGGAA 1729
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 GAAGTGCTTTGAAGATTTGGAGTACTCATACTTGATAGACAGAGCACTTGAGTGGGGGAA 1757
Query 1730 GCAGG 1734
|||||
Sbjct 1758 GCAGG 1762
Score = 1954 bits (1058), Expect = 0.0
Identities = 1137/1174 (97%), Gaps = 10/1174 (1%)
Strand=Plus/Plus
Query 1734 GGTAATGAATTGATGAGGATTCTAAACATAGCAGCGTTTGCCGTATCTGGCTATGCGTCC 1793
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1825 GGTAATGAATTGATGAGGATTCTAAACATAGCAGCGTTTGCTGTATCTGGCTATGCGTCC 1884
Query 1794 ACGGAAGGCAGGCAATGCAAACCTTTCAATCCTCTACTTGGGGAGACCTATGAAGCTGAG 1853
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1885 ACGGAAGGCAGGCAATGCAAACCTTTCAACCCTCTACTTGGTGAGACCTATGAAGCTGAT 1944
Query 1854 TATCCAGATAAAGGACTTCGTTTCTTCTCTGAGAAGGTGAGTCATCATCCTATGATTGTT 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 TATCCAGATAAAGGACTTCGTTTCTTCTCTGAGAAGGTGAGTCATCATCCTATGATTGTT 2004
Query 1914 GCTTGCCATTGTGAGGGACAAGGTTGGAATTTCTGGGGAGACTCAAATATCAAAGGAAAA 1973
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2005 GCTTGCCATTGTGAGGGACAAGGGTGGAATTTCTGGGGAGACTCAAATATCAAAGGAAAA 2064
Query 1974 TTTTGGGGACGGTCAATCCAGCTTGACCCAGTGGGTGTCTTGACATTAAAATTTGATGAT 2033
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2065 TTTTGGGGACGGTCAATCCAGCTTGACCCAGTGGGTGTCTTAACATTAAAATTTGATGAT 2124
Query 2034 GGTGAGATATATCAATGGAGCAAGGTTACCACTTCCATATACAACATCATCCTTGGTAAA 2093
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2125 GGTGAGATATATCAATGGAGCAAGGTTACCACTTCTATATACAACATCATCCTTGGTAAA 2184
Query 2094 CTTTACTGCGATCATTATGGAACCATGCGCATCAAAGGCGGTAGCAATTATTCCTGCCGG 2153
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2185 CTTTACTGCGACCATTATGGAACCATGCGTATCAAAGGCGGTAGCAATTATTCCTGCCGG 2244
Query 2154 TTGAAGTTCAAGGAGCAGTCAGTCATAGATCGAAACCCTCGTCAGGTTCATGGGTTTGTG 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 TTGAAGTTCAAGGAGCAGTCAGTCATAGATCGAAACCCTCGTCAGGTTCATGGGTTTGTG 2304
Query 2214 CAAGACAACAGAACCGGGGAGAAAGTAGCTATACTGATAGGCAAATGGGATGAAGCAATG 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2305 CAAGACAACAGAACCGGGGAGAAAGTAGCTATACTGATAGGCAAATGGGATGAAGCAATG 2364
Query 2274 TACTATGTACTGGGAGATCCGACAACAAAACCAAAGGGATATGATCCAATGACAGAAGCA 2333
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2365 TACTATGTATTGGGAGATCCGACAACAAAACCAAAGGGGTATGATCCAATGACAGAAGCA 2424
Query 2334 GTGTTACTGTGGGAAAGAGACAAATCTCCTACAAAAACAAGATACAATCTCTCCCCTTTT 2393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2425 GTGTTACTGTGGGAAAGAGACAAATCTCCTACAAAAACAAGATACAATCTCTCCCCTTTT 2484
Query 2394 GCGATCTCTCTCAATGAGATAACTCCTGGGATGATAGACAAATTGCCTCCAACAGATTCA 2453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2485 GCGATCTCTCTCAATGAGATAACTCCTGGGATGATAGACAAATTGCCTCCAACAGATTCA 2544
Query 2454 AGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAG 2513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2545 AGACTGAGACCAGACCAAAGACACTTAGAAAACGGTGAATATGAGTCAGCAAATGCCGAG 2604
Query 2514 AAACTGAGACTTGAACAGCTACAGAGACAGGCAAGGAGGCTGCAGGAGAAAGGATGGAAA 2573
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2605 AAACTGAGACTTGAACAGTTACAGAGACAGGCAAGGAGGCTGCAGGAGAAAGGATGGAAA 2664
Query 2574 CCGAGATGGTTCGAAAAGGATGAAGAAGGGAATTATCGGTATCTAGGAGGTTACTGGGAA 2633
|| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2665 CCAAGATGGTTTGAAAAAGATGAAGAAGGAAATTATCGGTATCTAGGAGGTTACTGGGAA 2724
Query 2634 GCAAGAGAGAAGAAAGATTGGGATAGAATCACTGACATTTTCAAGAAGCAGCAACAGCGG 2693
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2725 GCAAGAGAGAAGAAAGATTGGGATAGAATCACTGACATTTTCAAGAAGCAACAACAGCGT 2784
Query 2694 --C-C-CTC--ATCTTCTTCATCGTCTACCTTTCTTTAATCATCAATCATTCCATGtttt 2747
| | ||| |||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2785 AACTCGCTCTCATCTTCTTCATCGTCTACCTTTCTTTAATCATCAATTATCCCATGTTTT 2844
Query 2748 tttttt-tACTTTGATAATATAATACATATAGAAAGA-TCTTCACCATTCCCTCATTGTG 2805
|||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2845 TTTTTTGTGCTTTGATAATTTAATACATATAGAAAGAATCTTCACCATTCCCTCATTGTG 2904
Query 2806 CTTCTGTGAAAATTTGGCCGGAACCTATGTTGGTGTGTGTGTTCATCTGTAGATGTCATA 2865
|||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
Sbjct 2905 CTTCTGTGAAAATTTGGCCGGAACCTTTGTTGGTGTGCGTGT--ATCTGTAGATGTCAAA 2962
Query 2866 GAGACTTATTATTGGAAATGATGATTTTTTCCTT 2899
|||||| ||||||||||||||||| |||||||||
Sbjct 2963 GAGACTAATTATTGGAAATGATGAATTTTTCCTT 2996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144079460296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5