BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471471 Length=1837 Score E Sequences producing significant alignments: (Bits) Value AT1G13180.1 | Symbols: DIS1, ARP3, ATARP3 | Actin-like ATPase s... 2656 0.0 > AT1G13180.1 | Symbols: DIS1, ARP3, ATARP3 | Actin-like ATPase superfamily protein | chr1:4495028-4498469 FORWARD LENGTH=1915 Length=1915 Score = 2656 bits (1438), Expect = 0.0 Identities = 1625/1710 (95%), Gaps = 33/1710 (2%) Strand=Plus/Plus Query 1 ATCGGAAAAATCTCCCACGATGAAGTACAAATCGACGACGGCGACTTTGTCTATGATCTG 60 |||||||||||||| |||||| |||||| | ||||||||||||||||| ||||||||||| Sbjct 1 ATCGGAAAAATCTCACACGATAAAGTACCAGTCGACGACGGCGACTTTCTCTATGATCTG 60 Query 61 A--G-TTCGTTGAATTTCACGGGAATCTCTAATTTTCCGGGAAAATCAA--TTCTGT--T 113 | | |||| ||||| ||||| |||||||| |||||||||||||||||| |||| | | Sbjct 61 ACCGTTTCGCTGAATCTCACGTGAATCTCTGATTTTCCGGGAAAATCAATTTTCTCTCAT 120 Query 114 T-TCTCTC-CCCTTACATTGTTTCTCATAGCCTACGAGTGAGAAATTACGCGGTAGCTTG 171 | |||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 121 TGTCTCTCTCCC-TACATTGTTTCTCATAGCCTAC----GAGAAATTACGTGGTAGCTTG 175 Query 172 TCGGAAACTCAACTTCCGTTGACGGAAGGTGCGAGAAATAAGCAAGCTTAGGTTCGATCG 231 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 176 TCGGAAACTCAACTTCCGTTGACGGAAGGCGCGAGAAAGAAGCAAGCTTAGGTTCGATCG 235 Query 232 G--------AGGGTTTTCTAGTGTTTTAAGGGTAGAGATAATCGATCTTTGATTGGATAC 283 | |||||| |||||||||| || |||||||||||||||||| | || |||||| Sbjct 236 GAAAATTCTAGGGTTCTCTAGTGTTTAAACGGTAGAGATAATCGATCTCTAATCGGATAC 295 Query 284 TGTTTTGGATCTCCAGTCGCAGATCCTTCACCCTCTGGTGATCTGCTTTTGCTTTAGAGA 343 ||||||||||||||| | | | ||||||||||||| ||| |||||||||||||| Sbjct 296 TGTTTTGGATCTCCA-T------T-C-ACACCCTCTGGTGAGCTGATTTTGCTTTAGAGA 346 Query 344 TCGCCGGCGTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTGTTGTCATCGACAATG 403 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 347 TCGCCGGCTTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTATTGTCATCGACAATG 406 Query 404 GAACCGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGCTTTATTC-TACCA 462 |||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||| Sbjct 407 GAACTGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTA-TCTTACCA 465 Query 463 ACAGTAGTTGCAGTTAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 522 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 ACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 525 Query 523 TGGCAAACTCAACACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATCGGAGATGAA 582 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 526 TGGCAAACTCAGCACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATTGGAGATGAA 585 Query 583 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 645 Query 643 CAAGTTGAGGATTGGGATGCTATGGAAAGATATTGGCAGCAGTGTATATTTAACTATTTG 702 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 646 CAAGTTGAGGATTGGGATGCTATGGAGAGATATTGGCAGCAGTGTATATTTAACTATTTG 705 Query 703 AGATGTGATCCAGAGGATCACTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 762 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 706 AGATGTGATCCTGAGGATCATTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 765 Query 763 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTCAATGTTCCCGGGCTTTACATT 822 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 766 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTTAATGTTCCTGGGCTTTACATT 825 Query 823 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGGTACACAACATCAAAGTGTGAGATGACA 882 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 826 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGCTACACAACATCAAAGTGTGAGATGACA 885 Query 883 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 886 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 945 Query 943 GTTATTGGGAGCTGTATCAAATCGATCCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1002 || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 946 GTCATCGGGAGCTGTATCAAATCGATTCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1005 Query 1003 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1006 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1065 Query 1063 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1066 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1125 Query 1123 CACGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACAGGT 1182 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1126 CATGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACTGGT 1185 Query 1183 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTATTCTTTAAT 1242 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1186 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTGTTCTTTAAT 1245 Query 1243 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1305 Query 1303 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1306 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1365 Query 1363 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGAGATCTCAAGAAGATTGTTGAT 1422 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1366 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGGGACCTCAAGAAGATTGTTGAT 1425 Query 1423 GCTCGTGTTCTTGCAAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1482 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1426 GCTCGTGTTCTTGCTAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1485 Query 1483 GTTAATGTCGTGAGCCATCCAGTCCAGCGGTTTGCAGTTTGGTTTGGAGGCTCAGTCCTT 1542 |||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||| Sbjct 1486 GTTAATGTCGTGAGCCATCCTGTCCAGAGGTTTGCAGTTTGGTTTGGAGGCTCTGTGCTT 1545 Query 1543 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1605 Query 1603 GCAGGCATATGCCGCACAAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1662 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1606 GCAAGCATATGCCGCACGAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1665 Query 1663 AATTCATCAGCAGATCCTGTGAATGTTTGT 1692 |||||| |||||||| |||||||||||||| Sbjct 1666 AATTCACCAGCAGATTCTGTGAATGTTTGT 1695 Score = 115 bits (62), Expect = 1e-24 Identities = 67/69 (97%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 1692 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGGCATATTATT-T 1750 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1723 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGTCATATTATTAT 1782 Query 1751 TCAGACAAA 1759 ||||||||| Sbjct 1783 TCAGACAAA 1791 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90913186995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5