BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471471
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13180.1 | Symbols: DIS1, ARP3, ATARP3 | Actin-like ATPase s... 2656 0.0
> AT1G13180.1 | Symbols: DIS1, ARP3, ATARP3 | Actin-like ATPase
superfamily protein | chr1:4495028-4498469 FORWARD LENGTH=1915
Length=1915
Score = 2656 bits (1438), Expect = 0.0
Identities = 1625/1710 (95%), Gaps = 33/1710 (2%)
Strand=Plus/Plus
Query 1 ATCGGAAAAATCTCCCACGATGAAGTACAAATCGACGACGGCGACTTTGTCTATGATCTG 60
|||||||||||||| |||||| |||||| | ||||||||||||||||| |||||||||||
Sbjct 1 ATCGGAAAAATCTCACACGATAAAGTACCAGTCGACGACGGCGACTTTCTCTATGATCTG 60
Query 61 A--G-TTCGTTGAATTTCACGGGAATCTCTAATTTTCCGGGAAAATCAA--TTCTGT--T 113
| | |||| ||||| ||||| |||||||| |||||||||||||||||| |||| | |
Sbjct 61 ACCGTTTCGCTGAATCTCACGTGAATCTCTGATTTTCCGGGAAAATCAATTTTCTCTCAT 120
Query 114 T-TCTCTC-CCCTTACATTGTTTCTCATAGCCTACGAGTGAGAAATTACGCGGTAGCTTG 171
| |||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 121 TGTCTCTCTCCC-TACATTGTTTCTCATAGCCTAC----GAGAAATTACGTGGTAGCTTG 175
Query 172 TCGGAAACTCAACTTCCGTTGACGGAAGGTGCGAGAAATAAGCAAGCTTAGGTTCGATCG 231
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 176 TCGGAAACTCAACTTCCGTTGACGGAAGGCGCGAGAAAGAAGCAAGCTTAGGTTCGATCG 235
Query 232 G--------AGGGTTTTCTAGTGTTTTAAGGGTAGAGATAATCGATCTTTGATTGGATAC 283
| |||||| |||||||||| || |||||||||||||||||| | || ||||||
Sbjct 236 GAAAATTCTAGGGTTCTCTAGTGTTTAAACGGTAGAGATAATCGATCTCTAATCGGATAC 295
Query 284 TGTTTTGGATCTCCAGTCGCAGATCCTTCACCCTCTGGTGATCTGCTTTTGCTTTAGAGA 343
||||||||||||||| | | | ||||||||||||| ||| ||||||||||||||
Sbjct 296 TGTTTTGGATCTCCA-T------T-C-ACACCCTCTGGTGAGCTGATTTTGCTTTAGAGA 346
Query 344 TCGCCGGCGTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTGTTGTCATCGACAATG 403
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 347 TCGCCGGCTTAGTTTCTCTAATGGATCCGACTTCTCGACCCGCTATTGTCATCGACAATG 406
Query 404 GAACCGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGCTTTATTC-TACCA 462
|||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 407 GAACTGGGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTA-TCTTACCA 465
Query 463 ACAGTAGTTGCAGTTAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 522
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCTTCTAAGGCAACT 525
Query 523 TGGCAAACTCAACACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATCGGAGATGAA 582
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 526 TGGCAAACTCAGCACAACGCTGGAGTTGCTGCGGATCTCGATTTCTATATTGGAGATGAA 585
Query 583 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GCTCTTGCGAAATCGCGGTCTAGTAGTACTCATAATCTTCATTATCCAATTGAGCATGGT 645
Query 643 CAAGTTGAGGATTGGGATGCTATGGAAAGATATTGGCAGCAGTGTATATTTAACTATTTG 702
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 646 CAAGTTGAGGATTGGGATGCTATGGAGAGATATTGGCAGCAGTGTATATTTAACTATTTG 705
Query 703 AGATGTGATCCAGAGGATCACTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 762
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 706 AGATGTGATCCTGAGGATCATTATTTTCTTCTTACTGAAAGTCCTCTTACTCCTCCTGAA 765
Query 763 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTCAATGTTCCCGGGCTTTACATT 822
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 766 AGTCGAGAATATACTGGAGAAATTTTGTTTGAGACTTTTAATGTTCCTGGGCTTTACATT 825
Query 823 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGGTACACAACATCAAAGTGTGAGATGACA 882
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 826 GCTGTTAATTCAGTTCTTGCACTTGCTGCTGGCTACACAACATCAAAGTGTGAGATGACA 885
Query 883 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GGGGTTGTAGTAGATGTTGGAGATGGGGCAACTCATGTTGTACCTGTTGCAGAAGGTTAT 945
Query 943 GTTATTGGGAGCTGTATCAAATCGATCCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1002
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 946 GTCATCGGGAGCTGTATCAAATCGATTCCAATTGCTGGCAAAGATGTCACCCTCTTTATC 1005
Query 1003 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 CAGCAACTCATGCGGGAAAGAGGTGAGAATATACCACCAGAAGATTCATTCGATGTAGCC 1065
Query 1063 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CGTAAAGTGAAGGAAATGTACTGCTACACTTGTTCTGACATCGTAAAGGAGTTTAATAAA 1125
Query 1123 CACGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACAGGT 1182
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1126 CATGACAAAGAACCAGCAAAGTATATTAAACAATGGAAAGGTGTAAAGCCAAAGACTGGT 1185
Query 1183 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTATTCTTTAAT 1242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1186 GCACCATACACTTGCGACGTGGGATATGAACGATTCCTTGGACCCGAGGTGTTCTTTAAT 1245
Query 1243 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CCAGAGATATACAGCAATGACTTCACAACTACTTTACCAGCTGTGATAGACAAATGTATT 1305
Query 1303 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CAGTCTGCACCAATTGACACACGAAGAGCTTTATATAAGAATATAGTGTTGTCCGGAGGT 1365
Query 1363 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGAGATCTCAAGAAGATTGTTGAT 1422
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1366 TCAACTATGTTCAAAGATTTCGGAAGAAGGTTACAAAGGGACCTCAAGAAGATTGTTGAT 1425
Query 1423 GCTCGTGTTCTTGCAAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1482
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 GCTCGTGTTCTTGCTAATAACGCTCGTACTGGTGGTGAAATTACGTCTCAACCGGTGGAG 1485
Query 1483 GTTAATGTCGTGAGCCATCCAGTCCAGCGGTTTGCAGTTTGGTTTGGAGGCTCAGTCCTT 1542
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||
Sbjct 1486 GTTAATGTCGTGAGCCATCCTGTCCAGAGGTTTGCAGTTTGGTTTGGAGGCTCTGTGCTT 1545
Query 1543 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TCATCAACTCCTGAGTTTTTCGCGAGTTGCAGAACGAAAGAGGAGTATGAGGAATATGGA 1605
Query 1603 GCAGGCATATGCCGCACAAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1662
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 GCAAGCATATGCCGCACGAATCCGGTGTTCAAGGGAATGTATTGAAGCTGCTTCATAAAT 1665
Query 1663 AATTCATCAGCAGATCCTGTGAATGTTTGT 1692
|||||| |||||||| ||||||||||||||
Sbjct 1666 AATTCACCAGCAGATTCTGTGAATGTTTGT 1695
Score = 115 bits (62), Expect = 1e-24
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1692 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGGCATATTATT-T 1750
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1723 TTTAGGGTTCTTGAGTACACACAGTGTAAGCTAGGCTTGATGTAGAAGTCATATTATTAT 1782
Query 1751 TCAGACAAA 1759
|||||||||
Sbjct 1783 TCAGACAAA 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5