BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471474
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13195.1 | Symbols: | RING/U-box superfamily protein | chr1... 1919 0.0
> AT1G13195.1 | Symbols: | RING/U-box superfamily protein | chr1:4501581-4503591
REVERSE LENGTH=1224
Length=1224
Score = 1919 bits (1039), Expect = 0.0
Identities = 1171/1232 (95%), Gaps = 20/1232 (2%)
Strand=Plus/Plus
Query 1 gaaacaaagaatcaaaaaggcaaaaagaaaagagagagagaga-agaagaagaagtgaga 59
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1 GAAACAAAGAATCAAAAAGGCAAAAAGCAAAGAGAGAGAGAGAGAGAAGAAGAAGTGAGA 60
Query 60 CTTGTGTTCTTACGGTGTTTATAGCTTCTTTGTTTTGTCTTTTAGGTTCTTGCCTTTTTC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTGTTCTTACGGTGTTTATAGCTTCTTTGTTTTGTCTTTTAGGTTCTTGCCTTTTTC 120
Query 120 CGATCAATCAGACCAATCTCC-CCTTCACTTTTAGCATCTTATTCTCTTTCGTT-GTCTT 177
|||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
Sbjct 121 CGATCAATCAGACCAATC-CCTCCTTCACTTTTAGCATCTTATTCTCTTTCGTTCTTC-T 178
Query 178 TATATTTCTGGGAATTTTCTTCAATTGATTCCTCTTTGCTGTAA--TCACAA--ATACAG 233
||||||||||||||||||||||||| |||||||||||| ||||| |||||| | | ||
Sbjct 179 TATATTTCTGGGAATTTTCTTCAATCGATTCCTCTTTGTTGTAATCTCACAATTAGAGAG 238
Query 234 AGAGATATGTATAATCAGTTGGCGATAtcttcttcttcttcatcatcttcttcttcttcG 293
|||||||||||||||||||||||||||||||| ||||| | ||| |||||||||
Sbjct 239 AGAGATATGTATAATCAGTTGGCGATATCTTCGTCTTC-T--TCA------TCTTCTTCG 289
Query 294 TACTATGAATCTTTGAAGATTTTGGAAGCTGATGTTCAACACGCTAATTCTTTGGCAGAA 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TACTATGAATCTTTGAAGGTTTTGGAAGCTGATGTTCAACACGCTAATTCTTTGGCAGAA 349
Query 354 GCAATTCCAATGGGGAAGAACAATGTGCGGCTTCAGATGAAGTTGGTTCATAGTAACTTT 413
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 350 GCAATTCCAATGGGGAAGAACAATGTGCGGCTTCAGATGAAACTGGTTCATAGTAACTTT 409
Query 414 GCTTCATTATTACTCATCTTGCTTCGGTGGATTGATCTTTCTTGCTCATGTCTTATTCCT 473
||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 410 GCTTCATTATTACTCTTCTTGCTCCGGTGGATTGATCTTTCTTCCTCATGTCTTATTCCT 469
Query 474 CGCTACTTAAACCTTTTTCATGTTCTTGTCTACAAGGTCCAGTCTGATGGACAACCTAAG 533
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CGCTACTTAAACCTCTTTCATGTTCTTGTCTACAAGGTCCAGTCTGATGGACAACCTAAG 529
Query 534 CTTACCACACACGGAAGGAAAGCAACGATTAGTGAGTTCTACGGTGTGATACTACCATCA 593
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 530 CTTACCACGCACGGAAGGAAAGCAACGATTAGTGAGTTCTATGGTGTGATACTACCATCA 589
Query 594 CTTCAGCTATTGCACAGCAACTTAGACGAGTTGGTAACCGCAGACATCGGGTTTGACCTT 653
|| |||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 590 CTGCAGCTATTACACAGCAACTTAGATGAGTTGGAAACCACAGACATCGGGTTTGACCTT 649
Query 654 AAAAGACTCAGCAAGAAGATAACAACAGAGTCTCGCAGTAGTAGATTCAGCAATGCCGGG 713
||||||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct 650 AAAAGACTCAGTAAGAAGATAACAAAAGAGGCTCGTAGTAGTAGATTCAGCAATGCCGGT 709
Query 714 TTAGAGCGAGAAGAAGAATGCGGAATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCT 773
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 710 TTAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCT 769
Query 774 AATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGGAACTTGAAGTCCCAGTCA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 770 AATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGGAACTTGAAGTCTCAGTCA 829
Query 834 TGCCCGTTTTGTCGAGGCAGCATGAAGAGAGTGAACTCAGAGGACTTGTGGGTGCTTGCA 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGCCCGTTTTGTCGAGGCAGCATGAAGAGAGTGAACTCAGAGGACTTGTGGGTGCTTGCG 889
Query 894 GGTGATAACGACGTGGTGGATACAAGGACGGCTTCAAGGGAAGATTTGTTCAGATTCTAT 953
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGTGATAACGATGTGGTGGATACAAGGACGGCTTCAAGGGAAGATTTGTTCAGATTCTAT 949
Query 954 CTCTACATCAATAGCCTTCCCAAGGATTACCCAGAAGCTCTCTTTGTGGTTTACTACGAG 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 950 CTCTACATCAATAGCCTTCCCAAGGATTACCCAGAAGCTCTCTTTGTGGTTTACTATGAG 1009
Query 1014 TACTCAAATCTGCTATAGAATCTGGACAAACAAAACTTTGTACAGATTTTTAGATGGTAA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TACTCAAATCTGCTATAGAATCTGGACAAACAAAACTTTGTACAGATTTTTAGATGGTAA 1069
Query 1074 ATGTAATGTATAGAATGTAAAACTGTGGTAAGGCTTTTGGATGATTTGATGCGAATGCCA 1133
||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||
Sbjct 1070 ATGTATTGTATAGAATGTAAAACTGTGTTAAGGCTTTTGGATGATATGATGCAAATGCCA 1129
Query 1134 AAGCTCTCAGTTTTTACATACTTAATAATTCTGAAATTGCGAGAAAAGAAAAAATAGCTT 1193
|||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||
Sbjct 1130 AAGCTCTCAGTTTTTACATACTTAATAATTGTCAAATTGCGAGAAAA-AAAAAA-AGCTT 1187
Query 1194 GAATGCAGCAAATAATAAAGGTCTCCTTTCAT 1225
|||||||||||| ||||||| |||| ||||||
Sbjct 1188 GAATGCAGCAAAGAATAAAGATCTCATTTCAT 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5