BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471475
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13200.1 | Symbols: | F-box and associated interaction doma... 1448 0.0
AT1G11150.1 | Symbols: | transposable element gene | chr1:3728... 883 0.0
AT1G12855.1 | Symbols: | F-box family protein | chr1:4382160-4... 732 0.0
AT1G12870.1 | Symbols: | F-box and associated interaction doma... 444 1e-123
> AT1G13200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:4507221-4508528 REVERSE LENGTH=1308
Length=1308
Score = 1448 bits (784), Expect = 0.0
Identities = 1004/1107 (91%), Gaps = 28/1107 (3%)
Strand=Plus/Plus
Query 1 ATGATGGAGGCAGAGCAGCAAGTGGTAATGGCATCATCTTCATCACTaagaaagcgaaag 60
|||| ||| |||||| ||| || ||| || |||||| |||||| | | ||| |||||
Sbjct 1 ATGAAGGACGCAGAGAAGCGAGAGGTGATTGCATCA---TCATCA-TTACAAA--GAAAG 54
Query 61 agaaga-agaatgagaagaataataaggagaagaagaagaagaaacgagaagCGAGTA-- 117
|||| | || | | |||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 55 AGAA-ACAG-A-G-GAAGAAGACTAAGGAAAAGAAGAAGAAGAAACGAGAAGCGAGTACT 110
Query 118 AA-GGCTCCATCATCACTACCAAACGACATCG-TAGAAGAAAT-TTTCTTAAGATTTCCG 174
|| || |||||||||| ||||||||||| | | |||| || || ||| ||||||||||||
Sbjct 111 AATGGTTCCATCATCATTACCAAACGACGT-GCTAGAGGAGATCTTT-TTAAGATTTCCG 168
Query 175 GTGAAAGCCCTAATCCGACTCAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCT 234
|| ||||||||||||||||||||||||||||| ||| | |||| ||| |||||||| |||
Sbjct 169 GTTAAAGCCCTAATCCGACTCAAGTCTCTCTCGAAACAATGGAGATCGACGATCGAATCT 228
Query 235 CGCAGTTTTGAAGAGAGATACTTGAAGCTCGCTAAGCAAGCCTGCATGGATCATCCCAAG 294
|||||||||||||||||| |||||| | |||||||| |||||| | ||||||||||||||
Sbjct 229 CGCAGTTTTGAAGAGAGACACTTGACGATCGCTAAGAAAGCCTTCGTGGATCATCCCAAG 288
Query 295 GTCATGGTCATCA-CAGAAGAAGATCCCATAAGAGAAATCGGGTA-TCGTCC-GTTCACA 351
|||||| || | | |||||||||||||||||||| || |||| | |||||| | |||
Sbjct 289 GTCATGCTCGT-AGGAGAAGAAGATCCCATAAGAGGAACCGGG-ATTCGTCCAG-ACACT 345
Query 352 GACATTGGTTTTAGGACGA-TCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCT 410
||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 346 GACATTGGTTTTAGG-TTATTCTGCTTGGAATCGGCTTCTCTTCTATCCTTTACTCGTCT 404
Query 411 CAATTTCCCTCAAGGGTTCTTCCACTGGATCAAAATCTCTGAAAGCTGTGATGGCCTTTT 470
|||||||||||||||||||||| |||||||| | || |||||||||||||||||||||||
Sbjct 405 CAATTTCCCTCAAGGGTTCTTCAACTGGATCTACATATCTGAAAGCTGTGATGGCCTTTT 464
Query 471 CTGTATCCATTCACCAAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGGCT 530
||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 465 CTGCATCCATTCCCCAAAATCACATTCCGTATATGTAGTGAATCCGGCTACACGGTGGCT 524
Query 531 CCGCCTACTTCCTCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACGGAGCG 590
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 525 CCGCCTACTTCCTCCGGCAGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACTGAACG 584
Query 591 TGAGTGGAATATAGAAATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTA 650
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TGAGTGGAATGTAGTGATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTA 644
Query 651 CAAATTAGTGTGGTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGT 710
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 645 CAAATTAGTGTGGTTGTACAATTGTGATAAGTACATTGTTGATGCGTCGAGTCCAAACGT 704
Query 711 GGGAGTCACAAAGTGCGAGGTTTTTGACTTTAGGGTAAATGCTTGGAGGTACTTGGCTTG 770
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 705 GGGAGTCACAAAGTGCGAGATTTTTGACTTTAGGAAAAATGCTTGGAGGTACTTGGCTTG 764
Query 771 CACTCCAAGTCATCGGATATTTTATGACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTA 830
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 765 CACTCCAAGTCATCAGATATTCTATTACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTA 824
Query 831 TTGGTTTACGGAACCATATAATGAAAGAATCGAAGTAGTGGCTTTTGATATTCATACCGA 890
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 825 TTGGTTTACAGAACCATATAATGAAAGAATCGAAGTAGTGGCTTTTGATATTCAGACCGA 884
Query 891 AACATTCCGGTTGCTGCCTAAGATAAATCCGGCTATTGCTGGTTCAGATCCTCACCATAT 950
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 885 AACATTCCGGTTGCTGCCTAAGATTAATCCGGCTATTGCTGGTTCAGATCCTCACCATAT 944
Query 951 TGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGA-AAACGATACTATGA 1009
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 945 TGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGGGAGAAA-GATACTATGA 1003
Query 1010 TCCAAGATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAAGATTTTCACCATAG 1069
||||||||||||||||| | ||||||||||||||||||||||| |||||||| | |||||
Sbjct 1004 TCCAAGATATTTGGAGGTTGAAACCATCAGAAGACACATGGGAAAAGATTTTTAGCATAG 1063
Query 1070 ATTTGCTTTCTTGTTCTTCTTCTCGGA 1096
| ||| |||| ||| ||||||||||||
Sbjct 1064 ACTTGGTTTCCTGTCCTTCTTCTCGGA 1090
> AT1G11150.1 | Symbols: | transposable element gene | chr1:3728971-3731624
FORWARD LENGTH=2654
Length=2654
Score = 883 bits (478), Expect = 0.0
Identities = 863/1043 (83%), Gaps = 49/1043 (5%)
Strand=Plus/Plus
Query 75 aagaataataaggagaagaagaagaagaaacgagaagCGAGTAAAGGCTCCATCATCACT 134
||||| || || || ||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 1438 AAGAAAAAAAAAGA-AAGAAGAAGAAGAAACGAGAAGCCAGTGATTGCTCCATCATCTCT 1496
Query 135 ACCAAACGACATCGTAGAAGAAATTTTCTTAAGATTTCCGGTGAAAGCCCTAATCCGACT 194
||||| ||| ||||||| ||||| |||||| ||||||| |||||||| ||| | |||||
Sbjct 1497 GCCAAATGACGTCGTAGAGGAAATCTTCTTACGATTTCCAGTGAAAGCACTATTTCGACT 1556
Query 195 CAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCTCGCAGT--TTTGAAGAGAGA 252
||| ||||||| ||| | |||| ||| |||||||||||| || | || |||||||||
Sbjct 1557 CAAAACTCTCTCGAAACAATGGAGATCGACGATCGAGTCT--CAATCCTTCGAAGAGAGA 1614
Query 253 TACTTGAAGCTCGCTAAGC-AAGCC-TGCATGGATCATCCCAAGGTCATGGTCATCACAG 310
|||| ||| |||| ||| | || |||| ||||||| | ||| ||||| ||||| |
Sbjct 1615 CACTTAAAGATCGCCGAGCGATTCCATGCA--CATCATCCTAGGGTTATGGTGATCACTG 1672
Query 311 AAGAAGATCCCATAAGAGA-AATCGGGT--A--TCGTCC-GTTCACAGACATTGGTTTTA 364
|| |||||||| ||| | | || | | | |||||| | | |||||||||||||||
Sbjct 1673 AAAAAGATCCCCTAA-A-ACTATTGCCTCGACCTCGTCCAG-ACGCAGACATTGGTTTTA 1729
Query 365 GGACGA-TCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCTCAATTTCCCTCAA 423
|| | ||||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 1730 GG-TTATTCTGCTTGGAATCGGGTTCTCTTCTATCCTTTATTCTTCTCAATTTCCCTCAA 1788
Query 424 GGGTTCTTCC-ACTGGATCAAAATCTCTGAAAGCTGTGATGGCCTTTTCTGTATCCATTC 482
| ||| || ||| ||| | | |||| | |||| |||||||||||||| |||||||
Sbjct 1789 AGTTTC-GCCAACTATATCTACGTTTCTGGATGCTGCGATGGCCTTTTCTGCGTCCATTC 1847
Query 483 ACCAAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGGCTCCGCCTACTTCC 542
||| | ||| || | | |||||||| |||||||||||||||||| | || | ||||||
Sbjct 1848 ACCGAGATCGCAAGCCATGTATGTAGTAAATCCGGCTACACGGTGGTTACGACAACTTCC 1907
Query 543 TCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTAACCCCACGGAGCGTGAGTGGAATAT 602
||| ||| |||||||||||||||| ||| || |||| | | || ||| | |
Sbjct 1908 TCCAGCTAGGTTTCAGATTTTGAT--GCAA----AAGGCCACTTATAGAGATTGG--T-T 1958
Query 603 AGAAATGAAATCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTG 662
||| ||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1959 AGACATGAAGTCAGTCTTTCATCTAGCATTCGTGAAGGCCAATGATTATAAATTAGTGTG 2018
Query 663 GTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGTGGGAGTCACAAA 722
||||||||||| ||| ||||||| ||||||||| | ||||||||||| |||||| |||||
Sbjct 2019 GTTGTATAATTCTGACAAGTACAATGCTGATGCCTTGAGTCCAAACGAGGGAGTTACAAA 2078
Query 723 GTGCGAGGTTTTTGACTTTAGGGTAAA-TGCTTGGAG-GTACTTGGCTTGCACTCCAAGT 780
||||||||||||||||||||||| ||| | ||||||| | ||||| ||||||||||||||
Sbjct 2079 GTGCGAGGTTTTTGACTTTAGGGCAAACT-CTTGGAGAG-ACTTGACTTGCACTCCAAGT 2136
Query 781 CATCGGATATTTTATGACCAAA-AGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTAC 839
||||||||||| ||| ||||| | ||||||| |||||||||||| || |||||||| ||
Sbjct 2137 TATCGGATATTTCATGGCCAAATA-CCAGCATGTGCAAACGGGTCAGTATATTGGTTGAC 2195
Query 840 GGAACCATATAATGA-AAGAATCGAAGTAGTGGCTTTTGATATTCATACCGAAACATTCC 898
||| ||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2196 GGAGCCATATAATGATAA-AATCGAAGTAGTGGCTTTTGATATTCATGCCGAATCATTCC 2254
Query 899 GGTTGCTGCCTAAGAT-AAATCCGGCTATTGCTGGTTCAGATCCTCAC-CATATTGACAT 956
|||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||
Sbjct 2255 GGTTGCTGCCTAAGATCAAA-CCGGCTATTGCTGGTTCAGATCCG-ATGCATATTGACAT 2312
Query 957 GTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGAAAACGA-TAC-TATGATCCAA 1014
|||||||||||||||| ||||||| ||||||||||||||| ||| ||| | || |||||
Sbjct 2313 GTGCACTCTGGATAATGGTTTGTGCATGTCGAAAAGAGAAC-CGAATACGT-TGGTCCAA 2370
Query 1015 GATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAAGATTT-TCACCATAGATTT 1073
|| ||||||||| | ||| ||||||||||| ||||||||||||||| | || ||||||||
Sbjct 2371 GAGATTTGGAGGTTGAAATCATCAGAAGACTCATGGGAGAAGATTTGT-ACTATAGATTT 2429
Query 1074 GCTTTCTTGTTCTTCTTCTCGGA 1096
|||||| ||||||||||| ||||
Sbjct 2430 GCTTTCATGTTCTTCTTCCCGGA 2452
> AT1G12855.1 | Symbols: | F-box family protein | chr1:4382160-4383611
FORWARD LENGTH=1452
Length=1452
Score = 732 bits (396), Expect = 0.0
Identities = 850/1058 (80%), Gaps = 75/1058 (7%)
Strand=Plus/Plus
Query 68 gaatgagaagaataataaggagaagaagaagaagaaacgagaa-gCGAGTAAAGGCTCCA 126
||| |||||||| |||| || || ||||| |||||||||| || ||| || |||
Sbjct 212 GAAAGAGAAGAAGAATACCTAG-AG--GAAGAGGAAACGAGAAGGC-AGTGTTTGCACCA 267
Query 127 TCATCACTACCAAACGACATCGTAGAAGAAATTTTCTTAAGATTTCCGGTGAAAGCCCTA 186
||||||||||||||||| | ||||| ||||| |||||| || ||||||||||||| ||
Sbjct 268 TCATCACTACCAAACGATGTTGTAGAGGAAATCTTCTTACGACTTCCGGTGAAAGCAATA 327
Query 187 ATCCGACTCAAGTCTCTCTCAAAATATTGGAAATCAACGATCGAGTCTCGCAGTTTTGAA 246
|||| ||| ||||||||||||||| | |||| ||| ||||||||||||||||||||||||
Sbjct 328 ATCCAACTAAAGTCTCTCTCAAAACAATGGAGATCGACGATCGAGTCTCGCAGTTTTGAA 387
Query 247 GAGAGATACTTGAAGCTCGCT-AAGCAAGC-CTGCATGGATCATCCCA-AGGTCATGGTC 303
|||||| |||||||| ||| | ||| | | | || ||||| | ||| |||||||||||
Sbjct 388 GAGAGACACTTGAAGATCG-TCGAGCGATCAC-GCGTGGAT-TTTCCACAGGTCATGGTC 444
Query 304 ATCACAGAAGAAGATCCCAT--AAGAGAAAT-CGGGT-ATC-GTC-CGTTC----ACAGA 353
|| | |||||| || || | ||| ||| | ||| ||| | | ||| | |||||
Sbjct 445 ATGTCTGAAGAATATTCCTTGAAAG-GAAGTAAAGGTAATCAGCCTCGTCCAGATACAGA 503
Query 354 CATTGGTTTTAGGACGATCTGCTTGGAATCGGCTTCTCTTCTATCCTATACTCGTCTCAA 413
|||||||||||| || ||||| ||||||||||||||| |||| |||| |||| | |||
Sbjct 504 CATTGGTTTTAGTACAATCTGTTTGGAATCGGCTTCTATTCTGTCCTCCACTCTTATCAC 563
Query 414 TTTCCCTCAAGGGTTCTTC--CACTGGATCAAAAT-C-TCTGAAAGCTGTGATGGCCTTT 469
|||||||||| || | ||| ||| ||||| || | |||||||||||||| || ||||
Sbjct 564 TTTCCCTCAA-GGAT-TTCAACACCGGATC--TATGCTTCTGAAAGCTGTGACGGACTTT 619
Query 470 TCTGTATCCATTCACC-AAAATCACATTCTGTATATGTAGTTAATCCGGCTACACGGTGG 528
|||| |||||||| || |||| |||| | ||||||||||||| ||||| || ||||||
Sbjct 620 TCTGCATCCATTC-CCTAAAAACACAAGCCATATATGTAGTTAACCCGGCCACTCGGTGG 678
Query 529 CTCCGCCTACTTCCTCCGGCTGGGTTTCAGATTTTGATCCACAAGTTTA-ACCCCACGGA 587
| || | ||||||||||||| |||||||||||||||| || ||| ||| ||||||| |
Sbjct 679 TTTCGACAACTTCCTCCGGCTAGGTTTCAGATTTTGATGCAAAAG-TTATACCCCACTCA 737
Query 588 GCGTGA-GTGGAATATAGAAATGAAATCA--A-TCT-TTCAT-CTAGCATTCGTGAAGGC 641
| | ||| || | || || ||| || | ||| || || | |||||||||||||||
Sbjct 738 -AGACACTTGG-AT-T-GACATAAAACCAGTAGTCTGTT-ATAC-AGCATTCGTGAAGGC 791
Query 642 CACCGATTACAAATTAGTGTGGTTGTATAATTGTGATAAGTACATTGCTGATGCGTCGAG 701
|| |||||||||||||||| | | | || | | || ||| ||||||| ||||
Sbjct 792 CAATGATTACAAATTAGTGT-G--G------T-TG-T-A-TA-ATT-CTGATGCCTCGAA 836
Query 702 TCCAAACGTGGGAGTCACAAAGTGCGAGGTTTTTGACTTTAGGGTAAATGCTTGGAGGTA 761
||||||| ||||||| |||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 837 TCCAAACCTGGGAGTTACAAAGTGCGAGGTTTTTGATTTTAGGGCAAACGCTTGGAGGTA 896
Query 762 CTTGGCTTGCACTCCAAGTC-ATCGGATATTTTATGACCAA-AAGCCAGCATCTGCAAAC 819
|||| ||||||||||||| | |||||||||| ||||||| | |||||| || |||||
Sbjct 897 CTTGACTTGCACTCCAAG-CTATCGGATATTCCCTGACCAAGTA-CCAGCAGCTACAAAC 954
Query 820 GGGTCGGTTTATTGGTTTACGGAACCATATAAT-GAAAGAATCGAAGTAGTGGCTTTTGA 878
||||| |||||||||| ||||||||||||||| | | ||| |||| || ||| | ||
Sbjct 955 GGGTCTATTTATTGGTTCACGGAACCATATAATGGCGA-AATAAAAGTGGTAGCTCTCGA 1013
Query 879 TATTCATACCGAAACATTCCGGT-TGCTGCCTAAGATAAATCCGGCTATTGCTGGTTCAG 937
|||||| || ||||| || | || |||| |||||||| |||||||| |||||| ||||||
Sbjct 1014 TATTCACACTGAAACGTTTC-GTGTGCTACCTAAGATTAATCCGGCCATTGCTAGTTCAG 1072
Query 938 ATCCTCACCATATTGACATGTGCACTCTGGATAATAGTTTGTGTATGTCGAAAAGAGAAA 997
||||| ||||||| |||||||||||| |||||||| ||||||| ||||||||||||| ||
Sbjct 1073 ATCCTGACCATATCGACATGTGCACTTTGGATAATGGTTTGTGCATGTCGAAAAGAG-AA 1131
Query 998 AC-GATAC-TATGATCCAAGATATTTGGAGGCTAAAACCATCAGAAGACACATGGGAGAA 1055
| ||||| | || ||||||| || |||||| ||||| ||||||||||| ||||||||||
Sbjct 1132 TCGGATACGT-TGGTCCAAGAGATATGGAGGTTAAAATCATCAGAAGACTCATGGGAGAA 1190
Query 1056 GATTT-TCACCATAGATTTGCTTTCTTGTTCTTCTTCT 1092
| ||| | ||||||||||||||||||||||||||||||
Sbjct 1191 GGTTTAT-ACCATAGATTTGCTTTCTTGTTCTTCTTCT 1227
Score = 117 bits (63), Expect = 3e-25
Identities = 137/172 (80%), Gaps = 7/172 (4%)
Strand=Plus/Plus
Query 1099 GATTTGGTTGAGCCATCCACACCAGTGGC-AGTATGCAAGAATAAGAAGATTCTACTCTC 1157
||||||||||||||||||||||||||||| | |||||||| | ||||||||||| |||||
Sbjct 1270 GATTTGGTTGAGCCATCCACACCAGTGGCGA-TATGCAAGGACAAGAAGATTCTGCTCTC 1328
Query 1158 ACATTGCTATTCCCGCGGTCTGGTAAAATATGATTCCTTAACAAAGTCTCTC-GATTCTT 1216
|||| ||||| ||||| | || | ||||| ||| || || ||| ||| || | || |
Sbjct 1329 ACATCGCTATGCCCGCAATATGATCAAATACGATCCCCAAATAAAATCTATCAGTTTAAT 1388
Query 1217 TTTCCTACATCCTTGGTCTAAGA-GAAAAG-TTACTTATTTTCAAAGTTTGA 1266
|| || || ||||| || || || || | | || |||||||||| |||||||
Sbjct 1389 TTACCAACCTCCTTTGTGTA-GAAGATATGCTT-CTTATTTTCAGAGTTTGA 1438
> AT1G12870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:4387129-4389110 REVERSE LENGTH=1251
Length=1251
Score = 444 bits (240), Expect = 1e-123
Identities = 780/1024 (76%), Gaps = 103/1024 (10%)
Strand=Plus/Plus
Query 90 aag-aagaagaagaaacgagaagCGAGTAAAGGC-TCCATCATCACTACCAAACGACATC 147
||| ||| |||||| || |||||| | | | || | |||||||| ||||| |||| ||
Sbjct 54 AAGAAAG-AGAAGATACAAGAAGCTAATGATTGCAT-CATCATCATTACCAGACGATGTC 111
Query 148 GTAGAAGAAATTTTCTT-AAGATTTCCGGTGAAAGCCCTAATCCGACTCAAGTCTCTCTC 206
||||||||||| ||||| || | ||||||| ||||||||||| || | |||||||||||
Sbjct 112 GTAGAAGAAATCTTCTTGAA-ACTTCCGGTCAAAGCCCTAATGAGATTTAAGTCTCTCTC 170
Query 207 AAAATATTGGAAATCAACGATCGAGTCTCGC-AGTTT-TGAAGAGAGATACTTGAAGCTC 264
|||| | |||| ||| ||| |||||||| || | ||| | | |||| ||||||| |
Sbjct 171 AAAACAATGGAGATCGACGCTCGAGTCTTGCTA-TTTCT-CACAGAGGCACTTGAAAATA 228
Query 265 GCTAAGCAAGC-C-TGCATGGATCATCCCAAGGTCATGGTCATCACAGAAGAAGATCCCA 322
|| ||| | | | || |||||||||| || |||||| ||||||| | | || | |
Sbjct 229 GCCGAGCGATCACATG--TGGATCATCCAAAAGTCATGATCATCACTG-A-AA-A----A 279
Query 323 TAAGAGAAATCGGGTATCGTCCGTTCACAGACATTGGTTTTAGGACGATCTGC-TTGGAA 381
| | | | ||| | | || ||| ||| |||||||||| |||| | ||||||
Sbjct 280 T--G-G--A------ATC--CAG-ACATAGAGATTAGTTTTAGGACTATCT-CTTTGGAA 324
Query 382 TCGGCTT-CTCTTCTATCCTATACTCGTCTCAATTTCCCTCAAGGGTT-CTTCCACT-GG 438
|| | || | || |||||| | ||| | |||||||||||| || || | | || |
Sbjct 325 TCAG-TTAGTTTTTTATCCTCTGCTCTTTTCAATTTCCCTCGCGGATTCCAT-CA-TCCC 381
Query 439 ATCAAAATC-TCTGAAAGCTGTGATGGCCTTTTCTGTATCCATTCACCAAAATCAC-ATT 496
||| | | |||||||||||||| || ||||||| || ||||| |||||| ||| |
Sbjct 382 ATC-TACGCTTCTGAAAGCTGTGACGGAATTTTCTGCATTCATTCCCCAAAAACACAAGA 440
Query 497 CTGTATATGTAGTTAATCCGGCTACACGGTGGCTCCGCCTACTTCCTCCGGCTGGGTTTC 556
| |||||||||||||||| || ||||| ||| |||| | ||||||||||||| ||||||
Sbjct 441 C-ATATATGTAGTTAATCCAGCAACACGTTGGTTCCGACAACTTCCTCCGGCTAGGTTTC 499
Query 557 AGAT-TTTGATCCACAAGTTTAACCCCACGGAGCGTGAGTGGAATAT-AGA-A-ATGAAA 612
|||| ||| || |||||||| |||||||| | | || | | | ||| | |||| |
Sbjct 500 AGATCTTT-ATGCACAAGTTAAACCCCAC---TC-T-AG-ATACTTTGAGAGACATGATA 552
Query 613 TCAATCTTTCATCTAGCATTCGTGAAGGCCACCGATTACAAATTAGTGTGGTTGTATAAT 672
|| || |||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct 553 CCAGTCAATCATCTAGCATTCGTGAAGGCCACTGATTACAAATTAGTGT-G--G-----T 604
Query 673 TGTGATAAGTACATTGCTGATGCGTCGAGTCCAAACGTGGGAGTCACAAAGTGCGAGGTT 732
||| || | || | ||||||| ||||| | || | || ||||||||||||
Sbjct 605 TGT-AT-A--AC--T-CTGATGCCTCGAG-----A-GT-----T-ACTAAGTGCGAGGTT 645
Query 733 TTTGACTTTAGGGTAAATGCTTGGAGGTACTTGGCTTGCACT-CCAAGTCATCGGATATT 791
||||| |||| || ||| |||||||| |||||| |||||| | |||||| |||| ||||
Sbjct 646 TTTGATTTTAAGGCAAACGCTTGGAGATACTTGACTTGCA-TACCAAGTTATCGAATATA 704
Query 792 TTATGACCAAAAGCCAGCATCTGCAAACGGGTCGGTTTATTGGTTTACGGAACCATATAA 851
| ||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||
Sbjct 705 TCATGACCAAAAGCCAGCATCTGCAAACGGGACGCTTTATTGGTTCACGGAAACATATAA 764
Query 852 TGAAAGAA-TCGAAGTAGTGGCTTTTGATATTCATACCGAAACATTCCGGTTGCTGCCTA 910
|| | ||| || ||||| | ||||| |||||||| ||||||| ||| |||||||||||||
Sbjct 765 TGCA-GAAATCAAAGTAATAGCTTTGGATATTCACACCGAAATATTTCGGTTGCTGCCTA 823
Query 911 AGA-TAAATCCGGCTATTGCTGGTTCAGATCCTCA-CCATATTGACATGTGCACTCTGGA 968
|| || || ||||||| ||||||| ||| | ||||||||||||||||| | | ||
Sbjct 824 AGCCTAG--CCT--TATTGCTAGTTCAGAGCCT-AGCCATATTGACATGTGCATTATAGA 878
Query 969 TAATAGTTTGTGTATGT-CGAAAAGAGAAAACGATACTATGATC--C-AAGATATTTGGA 1024
|||||||||||| |||| ||||| |||| |||| | |||| | |||| |||||||
Sbjct 879 TAATAGTTTGTGCATGTACGAAAC-AGAAGGGGATAAGAAGATCATCCAAGAGATTTGGA 937
Query 1025 GGCTAAAACCATCAGAAGACACATGGGAGAAGATTT-TCACCATAGATTTGCTTTCTTGT 1083
|| | ||| |||| |||||| ||||||||||||||| | |||||| || ||||||||| |
Sbjct 938 GGTTGAAATCATCGGAAGACGCATGGGAGAAGATTTAT-ACCATAAATCTGCTTTCTTCT 996
Query 1084 TCTT 1087
||||
Sbjct 997 TCTT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5