BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471479
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13230.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1925 0.0
> AT1G13230.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:4520631-4522544 FORWARD LENGTH=1428
Length=1428
Score = 1925 bits (1042), Expect = 0.0
Identities = 1242/1337 (93%), Gaps = 19/1337 (1%)
Strand=Plus/Plus
Query 1 AATACATTACACGCTCTGTTTCTCCTGTTCTTGTTCTCTGTGTGAACAATGTTGTGGCAA 60
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AATACATCACACGCTCTGTTTCTCCTGTTCTTGTTCTCTGTCTGAACAATGTTGTGGCAA 60
Query 61 ACGtttttttACTCTCTTCTCTTACTATCTCTGCTTTTCTGTTGTACCGGAGATGAGTCT 120
|||||||||| |||||||||||||||||||||||||||| | |||| ||||||||| |||
Sbjct 61 ACGTTTTTTTCCTCTCTTCTCTTACTATCTCTGCTTTTCGGATGTAACGGAGATGAATCT 120
Query 121 TTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAAGCCTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTACCTGAAGTAACTGATTCTGAAGAAGCTCCAATGGACAAAAGAGAACGTGAAGCCTTG 180
Query 181 TACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACTCTGCGATTCAAGGATTTGTTGGTGATTCTTGGAACGGATCTGCTCTCTATCCTGAT 240
Query 241 CCTTGTGGTTGGACTCCAATTCAGGGTGTTTCATGTGACATCTACAATGACTTGTGGTAT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 241 CCTTGTGGTTGGACTCCAATTCAGGGTGTTTCTTGTGACATCTACAATGACCTGTGGTAT 300
Query 301 GTCACAGATTTGAGTTTAGGGCTTATTTACGAAAACTCGCTTGCTTGCTCCTCAAGTCTT 360
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 301 GTCACGGATTTGAGTTTAGGGCTTATTTATGAAAACTCGCTTCCTTGCTCCTCAAGTCTT 360
Query 361 CAGATAAGGCCAGAATTATTTGAGCTCAAGCACTTAAGGTCTCTCTCCTTCTTCAACTGC 420
|||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 361 CAGATAAGACCAGAGTTATTTGAGCTCAAGCATTTAAGATCTCTCTCCTTCTTCAACTGC 420
Query 421 TTTATCTCTCCCATGGTGATA--T-----GGA----T----AAACTTTGCATCTAACTTA 465
||||||||||||||||||||| | ||| | |||||||||||||||||||
Sbjct 421 TTTATCTCTCCCATGGTGATAGCTAAAGAGGAGTTGTGGACAAACTTTGCATCTAACTTA 480
Query 466 GAATCGCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGAAACTTCCTGAAACAATTGGC 525
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 GAATCTCTCGAGTTTAGATCCAATCCCGGTCTCATTGGGGAACTTCCTGAAACAATTGGA 540
Query 526 AATCTCACAAAGCTGAAGTCCTTAGTAGTTCTCGGAAATGGGTTCAATGGAGAACTACCG 585
|||||||||||||||||||| ||||| ||||||| |||||| || | |||||| |||||
Sbjct 541 AATCTCACAAAGCTGAAGTCTTTAGTGGTTCTCGAAAATGGATTTAGTGGAGAGCTACCC 600
Query 586 GCGAGTATCTGCAACTTAAAGA-ATCTAAAGCGGCTTGTTTTCGCAGGGAACTCATTCGC 644
|||||||||||||||||||||| | |||||| |||| ||||||||||||||||| || ||
Sbjct 601 GCGAGTATCTGCAACTTAAAGAGA-CTAAAGAGGCTGGTTTTCGCAGGGAACTCGTTTGC 659
Query 645 GGGAATGATCCCAAATTGTTTCAAAGGGTTAAAAGAGCTCTTGATCTTGGATTTGAGCCG 704
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGAATGATCCCAAACTGTTTCAAAGGGTTAAAAGAGCTCTTGATCTTGGATTTGAGCCG 719
Query 705 TAACTCTTTCTCAGGGACATTGCCTTCATCTGTTGGAGATTTGGTTTCTTTGCTCAAGCT 764
|||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 720 CAACTCTTTCTCAGGGACATTGCCTACATCTTTTGGAGATTTGGTTTCATTGCTCAAGCT 779
Query 765 TGACTTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGAAATAGGGCTTTTGAAGAA 824
|||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 780 TGACCTAAGCAATAACCTCTTAGAAGGGAACTTACCTCAAGAACTAGGATTTTTGAAGAA 839
Query 825 TTTGACACTTTTGGATCTGAGGAACAACAGATTCTCTGGTGGGCTGTCCAAGAATATTGA 884
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTTGACACTTTTGGACCTGAGGAACAACAGATTCTCTGGTGGGCTGTCCAAGAATATTGA 899
Query 885 AAATATTCAATCTCTAACGGAATTGGTGTTATCAAACAATCCAATGGGTGAGGAAGATAT 944
|||||| ||||||||||||||||| || ||||| ||||||||||||||||| || |||||
Sbjct 900 AAATATCCAATCTCTAACGGAATTAGTTTTATCTAACAATCCAATGGGTGAAGAGGATAT 959
Query 945 GATGGGAACAAAGTGGGAAAAGATGAAAAATTTGGTAGTTTTGGATTTATCCAAAATGGG 1004
| |||||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 960 GGTGGGAACAAATTGGGGGAAGATGAGCAATTTGGTAGTTTTGGACTTATCCAAAATGGG 1019
Query 1005 TTTGAGAGGTGAGATTCCAACAAGTCTAACCAACTTGAAAACGTTGAGATTTCTTGGTCT 1064
|||||||||||||||||| ||||||||||||||| |||| | ||| || |||||||||||
Sbjct 1020 TTTGAGAGGTGAGATTCCTACAAGTCTAACCAACCTGAAGAGGTTAAGGTTTCTTGGTCT 1079
Query 1065 GAACAACAACAATCTAACAGGTTTTGTTCCATCAAAGAAACTAGAGGCTTTGCCTTGTCT 1124
|||||||||||||||||| |||||||||||||| ||||| || || ||||||||||| ||
Sbjct 1080 GAACAACAACAATCTAACCGGTTTTGTTCCATCGAAGAAGCTTGAAGCTTTGCCTTGCCT 1139
Query 1125 TGGTGCTTTATACATCAATGAAAACAACTTAACAGGTGAGCTTAGATTCTCTACAAAGTT 1184
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1140 TGGTGCTTTATACATCAATGGAAACAACCTAACAGGTGAGCTTAGATTCTCTACAAAGTT 1199
Query 1185 CTATGAGAAGATGGGAAGAAGATTTAAAGCTTCAAGGAATCCAAATCTTTGTCAACCATT 1244
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 1200 CTATGAGAAGATGGGAAGAAGATTTAAAGCTTCAAAGAATCCAAATCTGTGTCAACC-TT 1258
Query 1245 T-GAAATGGTAAAGTCAGAATCTCATAAGCATTTACTTCCTCGTGGAGTGAAGCCATGCA 1303
| || ||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1259 TAGAGATGGTAATGTCAGAATCTCATAAACATTTAAGTCCTCTTGGAGTGAAGCCATGCA 1318
Query 1304 CTTAAGAGAAGGAAGAA 1320
|||||||||||||||||
Sbjct 1319 CTTAAGAGAAGGAAGAA 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66967527030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5