BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471480 Length=1361 Score E Sequences producing significant alignments: (Bits) Value AT1G13250.1 | Symbols: GATL3 | galacturonosyltransferase-like 3... 1770 0.0 > AT1G13250.1 | Symbols: GATL3 | galacturonosyltransferase-like 3 | chr1:4528623-4530063 REVERSE LENGTH=1441 Length=1441 Score = 1770 bits (958), Expect = 0.0 Identities = 1178/1279 (92%), Gaps = 35/1279 (3%) Strand=Plus/Plus Query 13 CACAGA-CT--AAAAATGTCTTCACTGCGTTTGCGTTTATGTCTTCTCCTACTCTTACCA 69 |||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 47 CACAGACCTAAAAAAATGTCTTCTCTGCGTTTGCGTTTATGTCTTCTTCTACTCTTACCT 106 Query 70 ATTGCGATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCACATTTCGAGAAGCTCCG 129 || | |||||||||||||||||||||||||||||||||||| | ||||| ||||||||| Sbjct 107 ATCACAATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCGCGTTTCGTGAAGCTCCG 166 Query 130 GCGTTTCGAAACGGCAGAGAATGCTCCAGAACAG-CATGG-TCACCATCGGATCGCGAAC 187 |||||||||||||||||||||||||||| ||| | ||||| | ||| ||||||| ||||| Sbjct 167 GCGTTTCGAAACGGCAGAGAATGCTCCAAAAC-GACATGGAT-ACCTTCGGATCACGAAC 224 Query 188 ACAATCCTTCAATCATCCACATCGCTATGACTCTCGACGCCATTTACCTCCGTGGCTCTG 247 |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 225 ACAACCCATCAATCATCCACATCGCTATGACTCTCGACGCAATTTACCTCCGTGGCTCAG 284 Query 248 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACGTCGTTTTCCACT 307 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 285 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACATCGTTTTCCACT 344 Query 308 TCATCGCAACTCACCGTCGCAGCGCCGATCTCCGCCGCATTATCTCCTCAACATTCCCTT 367 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 345 TCATCGCCACTCACCGTCGCAGCGCCGATCTCCGCCGCATAATCTCCTCAACATTCCCAT 404 Query 368 ACCTAACCTACCAAATTTACCATTTTGACCCTAATCTCGTCCGTAGCAAAATCTCTTCCT 427 ||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 405 ACCTAACCTACCACATTTACCATTTTGACCCTAACCTCGTCCGCAGCAAAATATCTTCCT 464 Query 428 CGATTCGTCGTGCTTTAGACCAACCTTTAAACTACGCACGGATCTACCTCGCCGATCTCC 487 | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 465 CTATTCGTCGTGCTTTAGACCAACCGTTAAACTACGCTCGGATCTACCTCGCCGATCTCC 524 Query 488 TTCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTTGTCGTCGACGACG 547 | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 525 TCCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTAGTCGTCGATGACG 584 Query 548 TGGCAAAACTCTGGAGAATCGATCTACGTCGTCACGTCGTCGGAGCTCCGGAGTACTGTC 607 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 585 TGGCTAAACTCTGGAGAATCGATCTACGTCGGCACGTCGTCGGAGCTCCGGAGTACTGTC 644 Query 608 ACGCGAACTTCACTAATTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTTCAAAGCGG 667 ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||| Sbjct 645 ACGCGAATTTCACTAACTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTACAAATCGG 704 Query 668 CGTTGAAAGGA-AGGAGACCGTGTTATTTCAACACCGGCGTGATGGTGATTGATCTCGGA 726 |||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 705 CGTTGAAA-GATAGGAAACCGTGTTATTTCAACACCGGAGTGATGGTGATTGATCTCGGA 763 Query 727 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTTGAGACATGGATGAGGATTCAAAAACGA 786 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 764 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTAGAGACATGGATGAGGATTCAAAAACGA 823 Query 787 CATCGTATTTATGAATTGGGATCTTTGCCTCCGTTTCTGCTTGTATTCGCCGGAGATGTT 846 ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 824 CATCGTATTTACGAATTGGGATCTTTGCCTCCGTTTCTGCTCGTTTTCGCCGGAGATGTT 883 Query 847 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAGGGGCTG 906 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 884 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAAGGACTT 943 Query 907 TGCCGGAATCTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 966 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 TGCCGGAATTTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 1003 Query 967 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1026 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1004 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1063 Query 1027 CTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTCACATCGGACGGTGG----- 1081 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1064 TTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTAACATCGGACGGTGGAGGAA 1123 Query 1082 ----------TGTTTTGCTGGCGTGGAAGAAAGCTAATTTAATCGG-CGGTAATAAAATA 1130 |||||||||| ||||||| ||||||| ||| ||||| || ||||||| || Sbjct 1124 GGCACGACCGTGTTTTGCTGACGTGGAATAAAGCTATTTTGATCGGTCG-TAATAAA-TA 1181 Query 1131 CGCGTGGGTGAAGCCACGTGGCAGATGATCGAAGAGGTGGTCGGTATTGATCCGACGGTG 1190 || ||| | |||||||||| |||||||| ||||||||||| ||| |||||| ||||||| Sbjct 1182 CGT-TGG-TCAAGCCACGTGCCAGATGATTGAAGAGGTGGTAGGTTTTGATCGGACGGTG 1239 Query 1191 TATAACCATTCATGTGATAATTATTAATTTTTT--C-AGGTGTAATCGAAAAGAAGAAAG 1247 |||||||||||||||||||| | |||| | | ||||||||||||||||||||| Sbjct 1240 TATAACCATTCATGTGATAA--AG-AATTCCCAGGCCAAGTGTAATCGAAAAGAAGAAAG 1296 Query 1248 TGAACGAGAAGAGTTAAGA 1266 ||||| ||||||||||||| Sbjct 1297 TGAACTAGAAGAGTTAAGA 1315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67017727575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5