BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471480
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13250.1 | Symbols: GATL3 | galacturonosyltransferase-like 3... 1770 0.0
> AT1G13250.1 | Symbols: GATL3 | galacturonosyltransferase-like
3 | chr1:4528623-4530063 REVERSE LENGTH=1441
Length=1441
Score = 1770 bits (958), Expect = 0.0
Identities = 1178/1279 (92%), Gaps = 35/1279 (3%)
Strand=Plus/Plus
Query 13 CACAGA-CT--AAAAATGTCTTCACTGCGTTTGCGTTTATGTCTTCTCCTACTCTTACCA 69
|||||| || |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 47 CACAGACCTAAAAAAATGTCTTCTCTGCGTTTGCGTTTATGTCTTCTTCTACTCTTACCT 106
Query 70 ATTGCGATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCACATTTCGAGAAGCTCCG 129
|| | |||||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 107 ATCACAATTAGCTGCGTCACAGTCACTCTCACTGACCTCCCCGCGTTTCGTGAAGCTCCG 166
Query 130 GCGTTTCGAAACGGCAGAGAATGCTCCAGAACAG-CATGG-TCACCATCGGATCGCGAAC 187
|||||||||||||||||||||||||||| ||| | ||||| | ||| ||||||| |||||
Sbjct 167 GCGTTTCGAAACGGCAGAGAATGCTCCAAAAC-GACATGGAT-ACCTTCGGATCACGAAC 224
Query 188 ACAATCCTTCAATCATCCACATCGCTATGACTCTCGACGCCATTTACCTCCGTGGCTCTG 247
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 225 ACAACCCATCAATCATCCACATCGCTATGACTCTCGACGCAATTTACCTCCGTGGCTCAG 284
Query 248 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACGTCGTTTTCCACT 307
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 285 TCGCCGGCGTCTTCTCCGTTCTCCAACACGCTTCTTGTCCTGAAAACATCGTTTTCCACT 344
Query 308 TCATCGCAACTCACCGTCGCAGCGCCGATCTCCGCCGCATTATCTCCTCAACATTCCCTT 367
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 345 TCATCGCCACTCACCGTCGCAGCGCCGATCTCCGCCGCATAATCTCCTCAACATTCCCAT 404
Query 368 ACCTAACCTACCAAATTTACCATTTTGACCCTAATCTCGTCCGTAGCAAAATCTCTTCCT 427
||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 405 ACCTAACCTACCACATTTACCATTTTGACCCTAACCTCGTCCGCAGCAAAATATCTTCCT 464
Query 428 CGATTCGTCGTGCTTTAGACCAACCTTTAAACTACGCACGGATCTACCTCGCCGATCTCC 487
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 465 CTATTCGTCGTGCTTTAGACCAACCGTTAAACTACGCTCGGATCTACCTCGCCGATCTCC 524
Query 488 TTCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTTGTCGTCGACGACG 547
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 525 TCCCAATCGCCGTCCGCCGCGTAATCTACTTCGACTCCGATCTCGTAGTCGTCGATGACG 584
Query 548 TGGCAAAACTCTGGAGAATCGATCTACGTCGTCACGTCGTCGGAGCTCCGGAGTACTGTC 607
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 585 TGGCTAAACTCTGGAGAATCGATCTACGTCGGCACGTCGTCGGAGCTCCGGAGTACTGTC 644
Query 608 ACGCGAACTTCACTAATTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTTCAAAGCGG 667
||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||
Sbjct 645 ACGCGAATTTCACTAACTACTTCACTTCAAGATTCTGGTCGAGTCAAGGTTACAAATCGG 704
Query 668 CGTTGAAAGGA-AGGAGACCGTGTTATTTCAACACCGGCGTGATGGTGATTGATCTCGGA 726
|||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 705 CGTTGAAA-GATAGGAAACCGTGTTATTTCAACACCGGAGTGATGGTGATTGATCTCGGA 763
Query 727 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTTGAGACATGGATGAGGATTCAAAAACGA 786
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 764 AAATGGAGAGAAAGGAGAGTCACGGTGAAGCTAGAGACATGGATGAGGATTCAAAAACGA 823
Query 787 CATCGTATTTATGAATTGGGATCTTTGCCTCCGTTTCTGCTTGTATTCGCCGGAGATGTT 846
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 824 CATCGTATTTACGAATTGGGATCTTTGCCTCCGTTTCTGCTCGTTTTCGCCGGAGATGTT 883
Query 847 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAGGGGCTG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 884 GAGCCGGTGGAGCATAGGTGGAATCAGCATGGTCTTGGTGGTGATAACTTGGAAGGACTT 943
Query 907 TGCCGGAATCTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 966
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TGCCGGAATTTGCATCCAGGTCCGGTGAGTTTGTTGCATTGGAGCGGGAAAGGGAAACCA 1003
Query 967 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TGGCTAAGGCTTGACTCGAGACGACCGTGTCCGTTGGATTCGTTATGGGCTCCTTATGAT 1063
Query 1027 CTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTCACATCGGACGGTGG----- 1081
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1064 TTGTTTCGTTATTCACCGTTGATCTCTGATAGCTGATTGTAACATCGGACGGTGGAGGAA 1123
Query 1082 ----------TGTTTTGCTGGCGTGGAAGAAAGCTAATTTAATCGG-CGGTAATAAAATA 1130
|||||||||| ||||||| ||||||| ||| ||||| || ||||||| ||
Sbjct 1124 GGCACGACCGTGTTTTGCTGACGTGGAATAAAGCTATTTTGATCGGTCG-TAATAAA-TA 1181
Query 1131 CGCGTGGGTGAAGCCACGTGGCAGATGATCGAAGAGGTGGTCGGTATTGATCCGACGGTG 1190
|| ||| | |||||||||| |||||||| ||||||||||| ||| |||||| |||||||
Sbjct 1182 CGT-TGG-TCAAGCCACGTGCCAGATGATTGAAGAGGTGGTAGGTTTTGATCGGACGGTG 1239
Query 1191 TATAACCATTCATGTGATAATTATTAATTTTTT--C-AGGTGTAATCGAAAAGAAGAAAG 1247
|||||||||||||||||||| | |||| | | |||||||||||||||||||||
Sbjct 1240 TATAACCATTCATGTGATAA--AG-AATTCCCAGGCCAAGTGTAATCGAAAAGAAGAAAG 1296
Query 1248 TGAACGAGAAGAGTTAAGA 1266
||||| |||||||||||||
Sbjct 1297 TGAACTAGAAGAGTTAAGA 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5