BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471483
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13270.1 | Symbols: MAP1C, MAP1B | methionine aminopeptidase... 2037 0.0
AT3G25740.1 | Symbols: MAP1B, MAP1C | methionine aminopeptidase... 612 3e-174
> AT1G13270.1 | Symbols: MAP1C, MAP1B | methionine aminopeptidase
1B | chr1:4544953-4547312 FORWARD LENGTH=1313
Length=1313
Score = 2037 bits (1103), Expect = 0.0
Identities = 1247/1316 (95%), Gaps = 12/1316 (1%)
Strand=Plus/Plus
Query 1 AAATTTTGATGTTTTGGG-TTAAGCAGTGAAGTTTGCGAAAATGGCGTCTTCAGTTATTC 59
|||||||||| ||||||| || |||||||||||||||||||||||||||||| ||| |||
Sbjct 6 AAATTTTGATATTTTGGGTTTTAGCAGTGAAGTTTGCGAAAATGGCGTCTTCGGTTTTTC 65
Query 60 TATCCAGTTTCTCGTCATCGTCTTCTTTGCAACT-TTCTTCTTCCTTTAACGGCGACTAC 118
|||||||||||||||||||||||||||||||||| | | ||||||||| ||||||| |||
Sbjct 66 TATCCAGTTTCTCGTCATCGTCTTCTTTGCAACTCTGC-TCTTCCTTTCACGGCGAGTAC 124
Query 119 TTAGCGCCGTCGAGGTGCTTTATCGGAGCTCCGGTCACTTCCTCTTCTTTATCAATCTCC 178
||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 125 TTAGCTCCGTCGAGATGCTTTCTCGGAGCTCCGGTCACTTCCTCTTCTTTATCACTCTCC 184
Query 179 GGTAAGAAGAACTCATATTCTCCGAGAAAATTCTACATTTCTGCCAAAAAAGTTTCTGGA 238
||||||||||||||||||||||||||| | ||| | |||||||||| |||||||||||
Sbjct 185 GGTAAGAAGAACTCATATTCTCCGAGACAGTTCCATGTTTCTGCCAAGAAAGTTTCTGGG 244
Query 239 TTAGAGGAAGCCATTAGAATCAGAAAAATGAGAGAGCTTGAAACTAAATCAAAAGTGAGG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 245 TTAGAGGAAGCCATTAGAATCAGAAAAATGAGAGAGCTTGAAACTAAATCAAAAGTTAGG 304
Query 299 AGAAATCCACCATTAAGACGAGGAAGAGTATCACCTCGTCTCCTTGTACCTGATCACATT 358
|||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 305 AGAAATCCACCATTAAGACGTGGAAGAGTATCGCCTCGTCTTCTTGTACCTGATCACATT 364
Query 359 CCAAGGCCTCCATATGTTGAGTCTGGTGTATTACCGGATATATCAAGTGAGTTTCAGATT 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 365 CCAAGGCCTCCTTATGTTGAGTCTGGTGTATTACCGGATATATCAAGTGAGTTCCAGATT 424
Query 419 CCTGGTCCTGAAGGCATTGCGAAAATGAGAGCTGCCTGCGAGCTCGCTGCTCGGGTTTTA 478
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 425 CCTGGTCCTGAAGGCATTGCGAAAATGAGAGCTGCTTGCGAGCTTGCTGCTCGGGTTTTA 484
Query 479 AACTATGCTGGAACTTTGGTTAAGCCATCTGTTACGACTAATGAAATCGACAAAGCTGTG 538
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 485 AACTATGCTGGAACTTTGGTTAAGCCATCTGTTACGACTAATGAAATCGATAAAGCTGTG 544
Query 539 CATGATATGATTATTGAAGCTGGTGGTTATCCTTCACCTCTTGGATATGGTGGATTTCCT 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 545 CATGATATGATTATTGAAGCTGGTGCTTATCCTTCACCTCTTGGATATGGTGGATTTCCT 604
Query 599 AAAAGTGTGTGTACATCAGTTAATGAGTGTATGTGTCACGGAATACCGGATTCTCGCCAG 658
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 605 AAAAGTGTGTGTACTTCAGTTAATGAGTGTATGTGTCACGGAATACCAGATTCTCGCCAG 664
Query 659 CTACAGAGCGGGGATATAATAAACATCGATGTCACGGTTTACTTGGATGGTTACCATGGA 718
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 665 CTACAGAGCGGGGATATAATCAACATCGATGTCACGGTTTACTTGGATGGTTACCATGGA 724
Query 719 GATACATCGAAAACTTTCTTCTGCGGAGAAGTTGACGAAGGTTTCAAACGACTTGTGAAG 778
||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 725 GATACGTCGAGAACTTTCTTCTGTGGAGAAGTTGACGAAGGTTTCAAACGACTTGTGAAG 784
Query 779 GTTACGGAAGAATGTTTGGAGAAAGGTATTGCCGTTTGTAAAGATGGAGCAAGCTTCAAG 838
|||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 785 GTTACGGAAGAATGTTTGGAGAGAGGTATTGCAGTTTGTAAAGACGGAGCAAGCTTCAAG 844
Query 839 AAAATCGGGAAAAGAATCAGTGAGCATGCGGAAAAGTACGGCTACAACGTTGTGGAGCGG 898
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 845 AAAATCGGGAAAAGAATCAGTGAGCATGCGGAAAAGTTCGGCTACAACGTTGTGGAGCGG 904
Query 899 TTTGTTGGGCATGGTGTTGGACCAATATTCCACTCCGAACCTCTTATATATCATTACCGA 958
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 905 TTTGTTGGGCATGGTGTTGGACCAGTATTCCACTCCGAACCTCTTATATATCATTACCGA 964
Query 959 AATGATGAGCCTGGGCTTATGGTTGAGGGACAAACTTTCACAATTGAACCGATTCTGACG 1018
|||||||||||||| || |||||||||||||| || |||||||||||||||||||| |||
Sbjct 965 AATGATGAGCCTGGACTAATGGTTGAGGGACAGACATTCACAATTGAACCGATTCTCACG 1024
Query 1019 ATTGGAACCACGGAATGTGTAACATGGCCAGACAACTGGACCACTCTGACAGCAGATGGT 1078
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1025 ATTGGAACCACAGAATGTGTAACATGGCCAGACAACTGGACTACTCTGACAGCAGATGGT 1084
Query 1079 GGCGTCGCTGCACAGTTTGAGCATACCATTCTGATTACCAGAACTGGTTCAGAGATTCTT 1138
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1085 GGCGTCGCTGCTCAGTTTGAGCATACCATTCTGATTACTAGAACTGGTTCAGAGATTCTT 1144
Query 1139 ACTAAATGCTGAA-CTTATTCACATTGATCATTTTCATTTTACCTTAATTTTAATTGCTG 1197
|| ||||||| || || ||||||||||||||||| ||||| ||||| || | ||||||
Sbjct 1145 ACCAAATGCTAAAACT-ATTCACATTGATCATTTCCATTTCACCTT--TTAT--TTGCTG 1199
Query 1198 CTCCTTTAAGGTCCATAGTATAAATTCATTATCTTTGAGACCATAGTCTTAACAATTTGT 1257
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1200 ATCATTTAAGGTCCATAGTATAAATTCATTATCTTTGAGACCATAGTCT-AACAATTTGT 1258
Query 1258 GTTAGTGCCATCGTTTAAGATCTCAAGATTAGTTTGCTATTTA-AAATTTCCCCAC 1312
|||||||||||| |||||||||||||||||||||||||||| | |||||| |||||
Sbjct 1259 GTTAGTGCCATCTTTTAAGATCTCAAGATTAGTTTGCTATT-AGAAATTTTCCCAC 1313
> AT3G25740.1 | Symbols: MAP1B, MAP1C | methionine aminopeptidase
1C | chr3:9397786-9399762 FORWARD LENGTH=1164
Length=1164
Score = 612 bits (331), Expect = 3e-174
Identities = 690/859 (80%), Gaps = 41/859 (5%)
Strand=Plus/Plus
Query 301 AAATCCACCATTAAG-ACGAGGAAGAGTATCACCTCGTCTCCTTGTACCTGATCACATTC 359
|||||||||| | || | | |||| |||||| || ||||| ||| |||||||| || |
Sbjct 200 AAATCCACCACT-AGTATGTGGAACAGTATCGCCACGTCTTAGTGTTCCTGATCATATAC 258
Query 360 CAAGGCCTCCATATGTTGAGTCTGGTGTA-TTACCGGATATATCAAGTGAGTTTCAGATT 418
|| ||||| ||||||||||||| | | || || || ||||||||||| || ||||||
Sbjct 259 TAAAGCCTCTATATGTTGAGTCTAGCAAAGTT-CCAGAGATATCAAGTGAATTACAGATT 317
Query 419 CCTGGTC-CTGA-AGGCATTGCGAAAATG-AGAGCTGCCTGCGAGCTCGCTGCTCGGGTT 475
||| | | || | |||||||| ||||||| ||| || || |||||||| ||||| ||
Sbjct 318 CCT-GACTCT-ATAGGCATTGTGAAAATGAAGA-AAGCGTGTGAGCTCGCGGCTCGTGTA 374
Query 476 TTAAACTATGCTGGAACTTTGGTTAAG-CCATCTGTTACGACTA-ATGAAATCGACAAAG 533
||| ||||||| |||||||||||| || || | |||||| || | ||||||| || ||||
Sbjct 375 TTAGACTATGCAGGAACTTTGGTT-AGACCGTTTGTTACTAC-AGATGAAATTGATAAAG 432
Query 534 CTGTGCATGATATGATTATTGAAG-CTGGTGGTTATCCTTCACCTCTTGGATATGGTGGA 592
| |||||| | ||| |||||| || ||||| |||||||||||||||||||||||||||
Sbjct 433 CAGTGCATCAGATGGTTATTG-AGTTTGGTGCATATCCTTCACCTCTTGGATATGGTGGA 491
Query 593 TTTCCTAAAAGTGTGTGTACATCAGTTAATGAGTGTATGTGTCACGGAATACCGGATTCT 652
|||||||||||||| |||||||| |||||||| ||||||| |||||| || || ||||||
Sbjct 492 TTTCCTAAAAGTGTTTGTACATCGGTTAATGAATGTATGTTTCACGGGATTCCCGATTCT 551
Query 653 CG-CCAGCTACAGAGCGGGGATATAATAAACATCGATGTCACGGTTTACTTGGATGGTTA 711
|| || |||||||| || ||||| |||||||||||||| |||||||||||||||| ||
Sbjct 552 CGTCC-GCTACAGAATGGAGATATTATAAACATCGATGTTGCGGTTTACTTGGATGGGTA 610
Query 712 CCATGGAGATACATCGAAA-ACTTTCTTCTGCGGAGAAGTTGACG-AAGGTTTCAAACGA 769
||||||||||| || ||| |||||||| || ||||| || | | ||| || |||| |
Sbjct 611 TCATGGAGATACGTC-AAAGACTTTCTTATGTGGAGACGTCAATGGAAGCCTT-AAACAA 668
Query 770 CTTGTGAAGGTTACGGAAGAATGTTTGGAGAAAGGTAT-TGCCGTTTGTAAAGATGGAGC 828
||||| ||||| || |||||||| |||||||||||||| | | |||||||||||||||||
Sbjct 669 CTTGTCAAGGTCACAGAAGAATGCTTGGAGAAAGGTATAT-CGGTTTGTAAAGATGGAGC 727
Query 829 AAGCTTCAAGA-AAATCGGGAAAAGAATCAGTGAGCATGCGGAAAAGTACGGCTACAACG 887
||||||||| | |||||||||| | ||||||||||||||| | |||||| ||||| ||
Sbjct 728 AAGCTTCAA-ACAAATCGGGAAGATAATCAGTGAGCATGCTGCAAAGTATGGCTATAA-- 784
Query 888 TTGTGGAGCGGTTTGTTGGGCATGGTGTTGGACCAATATTCCACTCCGAACCTCTTATAT 947
| ||||||| || | || |||||||| ||| | |||| ||||| |||||||||||||
Sbjct 785 TA-TGGAGCGATTCATCGGTCATGGTGTAGGAACGGTATTACACTCGGAACCTCTTATAT 843
Query 948 ATCATT-ACCG-AA--ATGATGA-GC-CTGGGCT-TATGGTTGAGGGACAAACTTTCACA 1000
||| || | | || ||||| | | || | | |||| |||| || |||||||| ||
Sbjct 844 ATC-TTCATAGTAACTATGATTATGAACTTGAATATATGATTGAAGGTCAAACTTTTACG 902
Query 1001 ATTGAACCGATTCTGACGATTGGAACCACGGAATGTGTAACATGGCCAGACAACTGGACC 1060
| ||||| ||||| || |||||||| || || | |||||||||||| ||||| |||||
Sbjct 903 CTCGAACCAATTCTCACCATTGGAACAACAGAGTTTGTAACATGGCCTGACAAATGGACA 962
Query 1061 ACTCTGACAGCAGATGGTGG-C-GTCGCTGCACAGTTTGAGCATACCATTCTGATTACCA 1118
| | |||| ||||||||||| | | | | ||||||||||||||||| ||||| |||||||
Sbjct 963 ATTGTGACCGCAGATGGTGGTCCGGC-C-GCACAGTTTGAGCATACAATTCTTATTACCA 1020
Query 1119 GAACTGGTTCAGAGATTCT 1137
|||||| |||| |||||
Sbjct 1021 CCACTGGTGCAGAAATTCT 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64557900870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5