BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471484
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13290.1 | Symbols: DOT5, WIP6 | C2H2-like zinc finger prote... 1893 0.0
> AT1G13290.1 | Symbols: DOT5, WIP6 | C2H2-like zinc finger protein
| chr1:4550153-4551620 REVERSE LENGTH=1215
Length=1215
Score = 1893 bits (1025), Expect = 0.0
Identities = 1163/1227 (95%), Gaps = 19/1227 (2%)
Strand=Plus/Plus
Query 1 AGTTACCAGTTCGTCCAGCCTCCATTGTCTTTCTCCACCATTTCCTCAAAACCCCA---- 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTACCAGTTCGTCCAGCCTCCATTGTCTTTCTCCACCATTTCCTCAAAACCCCATCTC 60
Query 57 TAtctctctctcatctctctTTCTATCTACTCAATGTATAATAATAACCAATATAGCTTC 116
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCTCTCTCATCTCTCTTTCTCTCTACTCAATGTATAATAATAACCAATATAGCTTC 120
Query 117 TCCGGTGACGAAGACTCCGTCGTCCTCAGACTTGGACCTCCTGGCCAACCATACCCTAGC 176
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 121 TCCGGTGACGAAGACTCCGTCGTCCTCAGCCTTGGACCTCCTGGCCAACAATACCCTAGC 180
Query 177 CATATCAAACCCACCAGTACTAAACCTTCTTCTGATCATGAGTTTAATCACCCATTAACA 236
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATAACAAACCTACCAGTACTAAACCTTCTTCTGATCATGAGTTTAATCACCCATTAACA 240
Query 237 AACCCTAATGGCGTCACCGTTGCTCTTCATATCGGTCCTCCGAGTTCCGACAAAGAAACC 296
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACCCTAATGGTGTTACCGTTGCTCTTCATATCGGTCCTCCGAGTTCCGACAAAGAAACC 300
Query 297 CTTACCGGCGGGAACAACCAAGAGGGTTTAACGGCGAGGCAGGGACAGTATTGGATCCCT 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTAGCGGCGGGAACAACCAAGAGGGTTTAACGGCGAGGCAGGGACAGTATTGGATCCCT 360
Query 357 TCGCTTTCTCAGATCCTTGTTGGTCCCACTCAGTTCTCTTGTTCTGTCTGTAACAAAACT 416
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCACTTTCGCAGATCCTTGTCGGTCCCACTCAGTTCTCTTGTTCTGTCTGTAACAAAACT 420
Query 417 TTTAACCGCTTCAACAACATGCAGATGCATATGTGGGGTCATGGTTCGCAATACCGAAAA 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAACCGCTTCAACAACATGCAGATGCATATGTGGGGTCATGGTTCGCAATACCGAAAA 480
Query 477 GGTCCAGAATCGCTCCGTGGGACGAAATCGTCATCTTCGATACTAAGGCTGCCATGTTAC 536
|| ||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GGCCCAGAGTCGCTCAGAGGGACGAAGTCGTCATCTTCGATACTAAGGCTGCCATGTTAC 540
Query 537 TGTTGTGCTGAAGGTTGTAAGAACAACATAGACCATCCAAGATCAAAGCCTCTCAAAGAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTTGTGCTGAAGGTTGTAAGAACAACATAGACCATCCAAGATCAAAGCCTCTCAAAGAC 600
Query 597 TTTAGAACGCTCCAAACGCATTACAAGCGGAAGCACGGAGCAAAACCTTTTCGTTGCCGC 656
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTAGAACGCTTCAAACGCATTACAAGCGGAAGCACGGAGCAAAACCTTTTCGTTGCCGC 660
Query 657 AAGAAGTGTGAAAAAACGTTTGCGGTGAGAGGCGATTGGAGAACGCATGAGAAAAATTGT 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGAAATGTGAAAAAACGTTTGCGGTGAGAGGCGATTGGAGAACGCATGAGAAAAATTGT 720
Query 717 GGGAAGTTGTGGTTTTGCGTTTGTGGGTCAGATTTTAAGCATAAGAGGTCACTTAAGGAT 776
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGAAGTTGTGGTTTTGCGTTTGCGGGTCAGATTTTAAGCATAAGAGGTCACTTAAGGAT 780
Query 777 CACGTTAAGGCTTTCGGTGATGGTCATGCGGCTCACACTGTGGGTGATCGTGTTGTAGCC 836
||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 781 CACGTTAGGGCTTTCGGTGATGGTCATGCGGCTCACACTGTAAGTGATCGGGTTGTAGGC 840
Query 837 ATTGGAGACGCagatgaagatgatgaggaggaggaagaagaggaagaagatgatgatgat 896
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 841 ATTGGGGACGCAGATGAAGATGATGAGGAGGAGGAAGAAGAGGAAGAAGATGATG-T-A- 897
Query 897 gaagaagaagatgctcacgaagaaaatgttcgtggagagaagaaCTATGGGATTAGATAT 956
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GAAGAAGAAGATGCTCATGAAGAAAATGTTCGTGGAGAGAAGAACTATGGGATTAGATAT 957
Query 957 GATCACTTTCGTCGTTATGGTCAGATTTCTGATGACAATTACTAACTAAATGGGTCATAT 1016
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 958 GATCACTTTCGTCGTTATGGTCAGATTTCTGATGACAATTACTAAATAAATGGGACATTT 1017
Query 1017 TTATGATCGATGGCCGGGTGTTATTAGGGTTTATGTAAGTGAGGCA-GCTTGATATGTAT 1075
||||||||||||| | | ||||||||||||| ||||||||| | | |||||||||||
Sbjct 1018 TTATGATCGATGG--G--TACTATTAGGGTTTATCTAAGTGAGGTATGTTTGATATGTAT 1073
Query 1076 GTATTTACCTCTTCGTCACGTTAGCTAGTGAATGT-AAGAGCAACCTTTTCCGAAAA-TA 1133
| | |||||||||||| |||||||||||| | | || || ||||||||||||||| ||
Sbjct 1074 -T-T--ACCTCTTCGTCAAGTTAGCTAGTGAGTCTTAA-AGTAACCTTTTCCGAAAAATA 1128
Query 1134 TATGTAGTGGTGGCTTTGGATTATATAAGTGCTTCTAATGTTGTCTCCAACAAACAATTT 1193
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1129 TATGTAGTGGTGGCTTTGGATTATATAAGTGCCTCTAACGTTGTCTCCAACAAGCAATTT 1188
Query 1194 CTGCATTTCTGGTAAATCTTCTGACCC 1220
|||||||| |||||||||||| |||||
Sbjct 1189 CTGCATTTTTGGTAAATCTTCAGACCC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59939450730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5