BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471490
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13340.1 | Symbols: | Regulator of Vps4 activity in the MVB... 2198 0.0
AT1G13330.1 | Symbols: AHP2 | Arabidopsis Hop2 homolog | chr1:4... 207 2e-52
> AT1G13340.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr1:4569448-4571118 REVERSE LENGTH=1479
Length=1479
Score = 2198 bits (1190), Expect = 0.0
Identities = 1336/1407 (95%), Gaps = 8/1407 (1%)
Strand=Plus/Plus
Query 32 CTCCTCTCTGCAACTCGGCCATGGGGAAGAAGCTTGACGCTTTGCTTGGTCGGAGTTTCA 91
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 56 CTCTTCTCTGCAACTCGGCCATGGGGAAGAAGCTTGACGCTTTGCTTGGTCGCAGTTTCA 115
Query 92 AGACCAACAAGTTCAAGTCTCTTATCACCTTAGCTCTCACAAGGCTCTTTATTCTTAAGA 151
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 116 AGACCAACAAGTTCAAGTCTCTTATCACCTTAGCTCTCACAAGGCTCTCTATTCTCAAGA 175
Query 152 ACCAGCGTCAAGCCAGACTCTCTCAAGCCATCTCTGATGTCACCGAGCTTCTCAAGCTCG 211
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 176 ACCAGCGTCAAGCCAGACTCTCTCAAGCCATCTCTGATGTCACCGAGCTTCTTAAGCTCG 235
Query 212 GCCATCACGAGAATGCTTACCATAGAGTCGACCAAGTCGTCAAAGACCAAAACACCCTGG 271
|||| || ||| | ||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 236 GCCAACATGAGCACGCTTACCATAGAGTCGATCAAGTCGTCAAAGACCAAAACACTCTCG 295
Query 272 ACGTTCTCTTCTTCATCCATGGCTACTTCACTCTCTGTATCGACCGTATTCACCTCTTTG 331
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 296 ACGTTCTCTTCTTCATCCATGGCTACTTCACTCTCTGTCTCGATCGTATTCACCTCTTTG 355
Query 332 AACACAACAGAGATTGTCCTGAAGAGCTTCTAGAAGCTGTTTCGGGCTTGCTTTTTGCAG 391
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 356 AACACAACAGAGATTGTCCTGAAGAGCTTCTAGAAGCTGTTTCGGGTTTGCTATTTGCAG 415
Query 392 CTTCTAGAATCGGTGAATTCCCTGAGCTTCAAGAGATTCGTAGTGTTTTGATTTCACGTT 451
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 416 CTTCTAGAATCGGTGAATTCCCTGAGCTTCAAGAGATTCGTAATGTTTTGATTTCGCGTT 475
Query 452 TTGGTAAAGATCTCGCTGCGCGGTCTATTGAGTTGCGCAGTAATTGTGGGGTTGATCGCA 511
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 TTGGCAAAGATCTCGCGGCTCGGTCTATTGAGTTGCGCAGTAATTGTGGGGTTGATCCCA 535
Query 512 AAATAATTCAGAAGTTGTCGACAAGACATCCACCGAAAGAAGTTAGAATGAAGGCTTTGA 571
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 AAATAATTCAGAAGTTGTCGACAAGACCTCCACCGAAAGAAGTTAGAATGAAGGCTTTGA 595
Query 572 AGGAGATTGCTGCAGAGAATAACATTGTTCTGAAACTAGAAGAAGCTTCTACGTCCACTG 631
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 596 AGGAGATTGCTGCAGAGAATAACATTGTTCTGAAACTAGACCAAGCTTCTACGTCCACTG 655
Query 632 AGGGAACAACACATATGCAGGGAACATCAGATGTTAGTAAGGCTAAGCTAACAAGTGAAG 691
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 656 AGGGAACAACAAATATGCAGGGAACATCAGATGTTAGTAAGACTAAGCTAACAAGTAAAG 715
Query 692 ATGAG-AGAGGAGAAGGTTATGGTTTATCTGATTCGGTCAAGAGAGGAAAGAAGAAGTAC 750
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATG-GCAGAGGAGAAGGTTATGGTTTATCTGATTCGGTCAAGAGAGGAAAGAAGAAGTAC 774
Query 751 AAAGATGTGGCTGATGCTGCACAAGCAGCGTTTGAGTCAGCAGCTCATGCAGCAGAGGCT 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAAGATGTGGCTGATGCTGCACAAGCAGCGTTTGAGTCAGCAGCTCATGCAGCAGAGGCT 834
Query 811 GCACGAGCGGCTGTGGAGCTTTCTCAGTTTTCTCCTCGTGGACATGACAGTCCGGGTAAC 870
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GCACAAGCGGCTGTGGAGCTTTCTCAGTTTTCTCCTCGTGGACATGACAGTCCGGGTAAC 894
Query 871 ATTGGTGGGGGAAATTCATTTCATGGGTCTGAAAACAAAGAATCAGAACAAGAACAAGGA 930
|||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 895 ATTGGTGGGGAAAATTCATTTCATGGTTCTGAAAACAAAGAGTCAGAACAAGAACAAGAA 954
Query 931 GGTAATGATGATTCTTCAGAAGGGGAAGGGGATGTGAGGTCAGAATCTAAGAGGTCGATG 990
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 955 GGTAATGATGATTCTTCAGAAGGGGAAGGGGATGTGATGTCAGAATCTAAAAGGTCGATG 1014
Query 991 TCGGATTCAGAAGATATTATTGATGATCTCCCAGTGATGTCATTCAGAGAAGACCCTGTG 1050
|| |||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 1015 TCAGATTCAGAAGATATTATTGATG-TC-CC-AGTGATGTCATTCAGAGAAGACCCTGTG 1071
Query 1051 AAGCTATTGGAGAAGGATACTGTTATCTATGATAGTGAAGAAGAAACCCAATCTAGTGTT 1110
||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 1072 AAGCTATTGGAGAAGGATACTATTATCTACGATAGTGAAGAAGAAACCCAACCTAGTGTT 1131
Query 1111 GAGACTAATACTATTCCTACGTCTAAAGATGAGCCAAGTCTTATGGTTGGTTCGAATAGA 1170
||||||| ||||||| || |||||||||||||| || || |||||||||||||||||||
Sbjct 1132 GAGACTATTACTATTAGTAAGTCTAAAGATGAGCAAAATCGTATGGTTGGTTCGAATAGA 1191
Query 1171 GCGGATACAAGACATGTGGACCACATTGTTCATTCAATTGAAGATCCTATTATGCGTAAA 1230
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1192 GCGGATACAAGACATGTGGACCACATGGTTCGTTCAATTGAAGATCCTATTATGCGTAAA 1251
Query 1231 GCAGGTTTGAAGGGTCCGGTTTCAGTCAGGACTAGACAGGTTCGTGGCTACTAAGTACAA 1290
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1252 GCAGGTTTGAAGGGTCCAGTTTCAGTCAGGACAAGACAGGTTCGTGGATACTAAGTACAA 1311
Query 1291 ATATTATAA-TTTTTCAGGTGCATCTATATGGTTTAACCACTGAGTTTTGTATTTTTCTA 1349
|| |||||| ||||||||||||||||| ||| ||| |||| ||||||||| |||||||
Sbjct 1312 ATGTTATAAGTTTTTCAGGTGCATCTAC--GGTGTAATCACTCAGTTTTGTACTTTTCTA 1369
Query 1350 TGTTCtttttttGCTCAAGGGTGTAAGATTATTTTGTTCTTTATGGATATAAGCTTTCAA 1409
|||||||||| || |||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 1370 TGTTCTTTTTGTGGTCAAAGATGTAAGATTATTGTGTTCTTTATGGATATAAGCTTTCAA 1429
Query 1410 TGATGTTGAACAGTTGCATATGTGTGT 1436
|||||||| ||||||||||||||||||
Sbjct 1430 TGATGTTGTACAGTTGCATATGTGTGT 1456
> AT1G13330.1 | Symbols: AHP2 | Arabidopsis Hop2 homolog | chr1:4567935-4570598
FORWARD LENGTH=1020
Length=1020
Score = 207 bits (112), Expect = 2e-52
Identities = 118/121 (98%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 514 ATAATTCAGAAGTTGTCGACAAGACATCCACCGAAAGAAGTTAGAATGAAGGCTTTGAAG 573
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 891 ATAATTCAGAAGTTGTCGACAAGACCTCCACCGAAAGAAGTTAGAATGAAGGCTTTGAAG 832
Query 574 GAGATTGCTGCAGAGAATAACATTGTTCTGAAACTAGAAGAAGCTTCTACGTCCACTGAG 633
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 831 GAGATTGCTGCAGAGAATAACATTGTTCTGAAACTAGACCAAGCTTCTACGTCCACTGAG 772
Query 634 G 634
|
Sbjct 771 G 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5