BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471492
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13380.1 | Symbols: | Protein of unknown function (DUF1218)... 1120 0.0
> AT1G13380.1 | Symbols: | Protein of unknown function (DUF1218)
| chr1:4589071-4590423 REVERSE LENGTH=775
Length=775
Score = 1120 bits (606), Expect = 0.0
Identities = 691/731 (95%), Gaps = 9/731 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTGGTCGGAGATAATGGGAGAAGGGAAGGCCTCGACTCTGGTTTTTATCCTCGTC 60
||||||| | |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 44 TCTCTTTCGCCGGAGATAATGGGAGAAGGGAAGGCCTCCACTCTGGTTTTCATCCTCGTC 103
Query 61 GTCGCTCTTAGTTTAGTCGCCTTCGGCTTCTCCATCGCCGCCGAGCGCCGCCGTAGCATC 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 104 GTCGCTCTTAGTTTAGTAGCCTTCGGCTTCTCCATCGCCGCCGAGCGCCGCCGCAGCATC 163
Query 121 GGGAAATCTATACAAGACCCAATAACAAACACAACGTTCTGCGTTTATGACTCTGATGTA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GGGAAATCTATTCAAGACCCAATAACAAACACAACGTTCTGCGTTTATGACTCTGATGTA 223
Query 181 GCCACTGGTTATGGAGTTGGAGCTTTCCTTTTCCTTCTCTCAAGTGAATCATTGCTTATG 240
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 224 GCCACTGGTTATGGAGTTGGAGCTTTCCTTTTCCTCCTCTCTAGTGAATCATTGCTTATG 283
Query 241 GGTGTTACCAAATGCATGTGTTTTGGAAGACCTTTAGCTCCGGGAAGTGACCGTGCTTGG 300
||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 284 AGTGTTACCAAATGCATGTGTTTTGGAAGACCCTTAGCCCCTGGAAGTGACCGTGCTTGG 343
Query 301 TCTATTATCTATTTCATCTCTTCTTGGATGACATTTCTGGTAGCAGAAGCTTGTGTAATA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 344 TCTATTATCTATTTCATCTCTTCGTGGATGACATTTCTGGTAGCAGAAGCTTGTGTAATA 403
Query 361 GCAGGAGCGACGAAGAACGCATACCACACAAAGTACTTAAGCTCGCAAACCTTTTCGTGT 420
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 404 GCAGGAGCGACCAAGAACGCATACCACACAAAGTACTTAAGTTCGCAAACCTTTTCGTGT 463
Query 421 GCATCACTTAG-G-AAAGGAATTTTCATTGCAGGAGCAGTGTTTATAGTTGCTACTATGG 478
|||||| || | | |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 464 GCATCA-TT-GCGTAAAGGAATTTTCATTGCAGGTGCAGTCTTTATAGTTGCTACTATGG 521
Query 479 TCCTTAATGTCTACTACTACATGTATTTTACCAAGTCTGTCTCTTCGCCGCCTGCTCACA 538
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 522 TTCTTAATGTCTACTACTACATGTATTTTACCAAGTCCGTCTCTTCGCCGCCTGCTCACA 581
Query 539 AAGCAAACCGCTCTGGTTCCAATATCGGTATGGCCGGATATGCATAAACGTCCTAAAA-A 597
|||| ||||||||| |||||||||| |||||||| || |||||||||| ||| |||| |
Sbjct 582 AAGCCAACCGCTCTAGTTCCAATATTGGTATGGCGGGTTATGCATAAATGTCA-AAAAGA 640
Query 598 GGAAATGGTTAGTCATTTGCATTGTAGATGTAAGAAAGAAAAGAGATTGTTGCATTGTTA 657
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 641 GGAAATGGTTAGTCATTTGCATTGTAGATGTAAGAAAGGAAAGAGATTGTTGCATTGTTA 700
Query 658 CAACACTTGGTTACTACTCTATATCTTTTGCTTATATATTTCT-ACTTGTTTATGAAAAT 716
||||||||||||||| || |||||||||||||||||||| ||| |||| |||||||||||
Sbjct 701 CAACACTTGGTTACT-CT-TATATCTTTTGCTTATATATCTCTTACTTATTTATGAAAAT 758
Query 717 TTTCGTTATTT 727
||||| |||||
Sbjct 759 TTTCGCTATTT 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5