BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471493
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13390.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 881 0.0
> AT1G13390.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G68490.1);
Has 114 Blast hits to 114 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4592829-4593683
REVERSE LENGTH=665
Length=665
Score = 881 bits (477), Expect = 0.0
Identities = 550/583 (94%), Gaps = 14/583 (2%)
Strand=Plus/Plus
Query 206 TAATTCACTATTT-TGTGT-GTTTGATTGATTCTTTG-A--AGCAACCAAAGATGATGAA 260
||||||||| ||| | ||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 83 TAATTCACTTTTTCTTTGTGGTTTGATTGATTCTTTGAAGCAGCAACCAAAGATGATGAA 142
Query 261 CAGCTGTGGAATCCAACAAAACGCTTTTGAAGAGATGAAGAGAAACGCCGTCGTTTCTGA 320
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 143 CAGCTGTGGAATCCAACAAAACGCTTTTGAAGAGATGAGGAGAAACGCCGCCGTTTCTGA 202
Query 321 TCGGAGAGACGCCGTGATTTGTCCTAAACCTCGTCGTGTTGGTGCTCTTAATCACCACTC 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TCGGAGAGACGCCGTGATTTGTCCTAAACCTCGTCGTGTTGGTGCTCTTAATCACCACTC 262
Query 381 TTCTCGATCTCTCCGATGGCAACTCAATCATCAGATGGAATCATGTGAATCGAATTCAGG 440
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 263 TTCTCGATCTCTCCGTTGGCAACTCAATCATCAGATGGAATTATGTGAATCGAATTCAGG 322
Query 441 AAGTGAGATTTTGGATTTCATCCTCACAAA--------G-GGTGGTGGTGAACAAGATCA 491
|||||||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 323 AAGTGAGATTTTGGATTTCATCCTCACAAAGGGTGGTGGTGGTGGTGGTGAGCAAGATCA 382
Query 492 GACGAGGAGGGTGATGACGCCGCCTTTGTTCTTCACAGGGTCACCACCAAGTAGAGTTTC 551
|||||||| |||||||||||| ||| ||||||| ||||||||||| ||||||||||||||
Sbjct 383 GACGAGGACGGTGATGACGCCACCTCTGTTCTTTACAGGGTCACCTCCAAGTAGAGTTTC 442
Query 552 TAACCCATTAACAAAAGATTCACTTTTTCGAGAAGAGCTTCTCGTGGTGGCTTCTCCGAC 611
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 443 TAACCCATTAACAAAAGATTCGCTTTTTCGAGAAGAGCTTCTCATGGTGGCTTCTCCGAG 502
Query 612 TCCATCGACTCCACGAGCAACCAAACCGCAGCCACCGTCTTCTCCAAGGAACGGCAGTTG 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 503 TCCATCGACTCCACGAGCAACCAAACCGCAGCCACCGTCTTCTCCAAGGAACGGTAGTTG 562
Query 672 TGTTATGGCGGCGACGAGTTTCGGGAACAATCCCGTGGTTCGTGTTGTGGGATTCGATTG 731
||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 563 TGTTATGGCGGCGACGAGTTTCGGGAACAATCCTGTGGTTCGTGTTGTGGGGTTTGATTG 622
Query 732 TGACAGACGCAGCAGCAACAGGAGCATTTCGACTCTTGCATAA 774
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TGACAGACGCAGCAGCAACAGGAGCATTTCGACTCTTGCATAA 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5