BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471495
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13400.1 | Symbols: NUB, JGL | C2H2 and C2HC zinc fingers su... 1038 0.0
> AT1G13400.1 | Symbols: NUB, JGL | C2H2 and C2HC zinc fingers
superfamily protein | chr1:4597627-4598911 FORWARD LENGTH=781
Length=781
Score = 1038 bits (562), Expect = 0.0
Identities = 729/804 (91%), Gaps = 34/804 (4%)
Strand=Plus/Plus
Query 1 GAGTTCCATGCTCAATGTTCTCATTGCTAAAGAGAGAAATAAAGAGAAAGAGAAACTGAT 60
||||||||||||||||||||||||| ||||||||| ||| ||||||| ||| ||||||||
Sbjct 1 GAGTTCCATGCTCAATGTTCTCATTTCTAAAGAGATAAA-AAAGAGAGAGATAAACTGAT 59
Query 61 TAAAAGAAATTTCACAAAGCTCTC-----TTTAT--CTCCATCTTCACTC-CATCAAGTC 112
|||||||||||||||||||||||| ||||| |||||||||||||| | |||| ||
Sbjct 60 TAAAAGAAATTTCACAAAGCTCTCTTTAATTTATCCCTCCATCTTCACTCTC-TCAACTC 118
Query 113 TTTATCCTTACAAGTTTCTTCCTCTCCTGTCTTCTTGGTAACCATGAGAGCTGATGATAA 172
||||||||| |||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct 119 TTTATCCTT---AGTTTCGT-CTCTCCTGTCTTCTTGGTAACCATGAGAGCTGATGAAAA 174
Query 173 TAACACTTTAGATCTTAATAACTTACCTGATGATCCTTCTAGAGACATTTTCCCTTTCTT 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 175 TAACACTTTAGATCTTAATAACTTACCTGATGATCCTTCTAGAGACATTTTCCCATTCTT 234
Query 233 TGAAGAAGGCTCCTCTTCCTCTTCCTCTTCTGGAGGGTTTAGAGAGAAGCAAACCAAAGA 292
||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 235 TGAAGAAGGCTTCTCTTCATCTTCTTCTTCTGGAGGGTTTAGAGAGAAGCAAACAAAAGA 294
Query 293 CGGGAAAGAGTATGAATGTAGATTTTGTTCACTAAAGTTCTTCAAATCTCAAGCTCTAGG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 295 TGGGAAAGAGTATGAATGTAGATTTTGTTCACTAAAGTTCTTCAAATCTCAAGCTCTCGG 354
Query 353 TGGCCACATGAACCGCCACCGTCAAGAAAGAGAGACGGAGTCACTAAACAAAGCTCGTGA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGGCCACATGAACCGCCACCGTCAAGAAAGAGAGACGGAGTCACTAAACAAAGCTCGTGA 414
Query 413 ACTTGTTCTTCGCAACGATAGCTTTCCTCCTCATCAAGGACTTCCATCGTTTAGTTATCA 472
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 415 ACTTGTTCTTCGCAACGATAGCTTTCCTCCTCATCAAGGACCTCCATCGTTTAGTTATCA 474
Query 473 TCAAGGAGATGTGCATATAGGAGACCTAACATCA-TTCAAACCAATGATGTATCCACCAA 531
||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |
Sbjct 475 TCAAGGAGATGTGCATATAGGAGACCTAACA-CAATTTAAACCAATGATGTACCCACCGA 533
Query 532 GACTTTTCTCTAGCTCCTTCTCCGCCTCTTCCTCCGCCCTCCAGCTGCAGCCACCATTTC 591
||| |||||| | |||| | | || ||||||||| |||||||||||| ||||||| ||
Sbjct 534 GACATTTCTC-A-CTCC--C-CGGC-TCTTCCTCCATCCTCCAGCTGCAACCACCATATC 587
Query 592 TTTATCCTCCTCCGTCACCACCGTTTCCTCACCATCACACCAACGATTACTATCTAGGCA 651
|||||||||| | ||| ||||||||||||| ||| |||||||| || | ||||
Sbjct 588 TTTATCCTCCGCTGTCTTCACCGTTTCCTCAACATAACACCAAC-AT-A-------GGCA 638
Query 652 ACAACGGTTCACATCACCAAATCCTAACCAATAGCGTTTGCGGTGCTCGTGCACTAGCTG 711
|||||||| | | |||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct 639 ACAACGGTACGCGTCACCAAACCCTAACCAATAGCGTTTGCGGTGGTCGTGCACTACCTG 698
Query 712 ACTCGAGTTACACTTTCATCGGAGCACCAGTGGCTAATGGTTCTAGAGTTGCTCCTCTAC 771
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 699 ACTCAAGTTACACCTTCATCGGTGCACCAGTGGCTAATGGTTCTAGAGTTGCTCCAC-AT 757
Query 772 CTTTACCTCCACATCATGGGCTAT 795
|| ||||||||||||||||||||
Sbjct 758 CT--ACCTCCACATCATGGGCTAT 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5