BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471504
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13460.1 | Symbols: | Protein phosphatase 2A regulatory B s... 2560 0.0
AT3G26020.4 | Symbols: | Protein phosphatase 2A regulatory B s... 721 0.0
> AT1G13460.1 | Symbols: | Protein phosphatase 2A regulatory B
subunit family protein | chr1:4615813-4618329 FORWARD LENGTH=1870
Length=1870
Score = 2560 bits (1386), Expect = 0.0
Identities = 1607/1712 (94%), Gaps = 21/1712 (1%)
Strand=Plus/Plus
Query 221 AGTT-ATGAATTTGTTCTTATAAGGTG-TTGTTTTGGGGATATGAACAGAGAAGAATCTG 278
|||| ||||| |||||||| | || || |||||||||||||||||||| |||||||||||
Sbjct 171 AGTTGATGAAATTGTTCTTCT-AGATGTTTGTTTTGGGGATATGAACAAAGAAGAATCTG 229
Query 279 AGTTTAATAAACTATGTGGAAACAGATTCTAAGTAAGCTTCCTAAGAAGGCTTCTTCTAA 338
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 230 AGTTTAATACACTATGTGGAAACAGATTCTGAGTAAGCTTCCTAAGAAGTCTTCTTCTAA 289
Query 339 GAGCCATTCTTCTTCATCTAGTTCCAATGCATCTACTTCCAAAAGTAGTGATAATGGCGC 398
|| |||||||||||||||||| | | | | ||||| ||||||||||||||||||||
Sbjct 290 GAACCATTCTTCTTCATCTAG-T----T-C--C-ACTTCAAAAAGTAGTGATAATGGCGC 340
Query 399 TGGGAAATCGGGGAATTCTCACACCAAGAACGCTCCTGCTGTAAAACCTGCTGCTGATTC 458
| |||||||| |||||||| ||| ||||||||||| ||||||||||| ||||||||||
Sbjct 341 CAGTAAATCGGGTAATTCTCAAACCCAGAACGCTCCTCCTGTAAAACCTTCTGCTGATTC 400
Query 459 AGGGTTTAAAGATGGGAATTTAAAAGGAAATGGGAACGGTTTTACGCCGTATGAAGCATT 518
|||||||||||| |||||||| ||||||||||| |||||||| || || |||||||||||
Sbjct 401 AGGGTTTAAAGAAGGGAATTTGAAAGGAAATGGTAACGGTTTCACTCCATATGAAGCATT 460
Query 519 GCCGGGTTTTAAAGATGTTCCAAATGCAGA-AAAGCAGAACTTGTTTGTGA-AAAAGCTC 576
||| ||||| ||||||||||| |||||||| ||| |||||||||||||||| |||| |||
Sbjct 461 GCCAGGTTTCAAAGATGTTCCTAATGCAGAGAAA-CAGAACTTGTTTGTGAGAAAA-CTC 518
Query 577 AACTTGTGCTGTGTACCGTTCGATTTCTCGGATCCAACGAAGAACGTTAAGGAAAAGGAG 636
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGCTTGTGCTGTGTTGTTTTCGATTTCTCGGATCCAACGAAGAACGTTAAGGAAAAGGAT 578
Query 637 ATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTGGCTTCTCCCAATGGAAAGTTC 696
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 579 ATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTAGCTTCTCCTAATGGAAAGTTT 638
Query 697 AGCGAAACGGTTATTCAAGAAGTGGTTAGAATGGTTTCTGTTAATATATTCAGAACCTTG 756
|| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 639 AGTGAAACTGTGATTCAAGAAGTGGTTAGAATGGTTTCTGTTAACATATTCAGAACCTTG 698
Query 757 AATCCTCAACCGCGCGAGAATAAAGTTATTGATGCCTTAGACGTGGAGGAAGAAGAGCCT 816
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 699 AATCCTCAACCGCGCGAGAATAAAGTTATTGATGCGTTAGACTTGGAGGAAGAAGAGCCT 758
Query 817 TCTATGGATCCTACGTGGCCTCACTTGCAGCTTGTCTATGAGATTCTCCTGCGGCTTATT 876
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 759 TCTATGGATCCTACTTGGCCTCACTTGCAGCTTGTCTATGAAATTCTCCTGCGGCTTATT 818
Query 877 GCTTCACCCGAGACAGACACCAAGCTGGCTAAGAAATACATTGACCAATCTTTTGTCTCA 936
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 GCTTCACCAGAGACAGACACCAAGCTGGCTAAGAAATACATTGACCAATCTTTTGTCTCA 878
Query 937 CGGATACTTGATTTATTTGATTCCGAGGATCCTAGAGAAAGAGATTGTCTTAAGACCGTT 996
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 879 AGGTTACTTGATTTATTTGATTCAGAGGATCCTAGAGAAAGAGATTGTCTTAAGACCGTT 938
Query 997 CTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTTTCATAAGGAAATCCATTAAC 1056
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 CTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTTTCATAAGGAAATCCATTAAT 998
Query 1057 AACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACATAACGGGATTGCTGAGTTTCTA 1116
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 999 AACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACACAATGGGATTGCTGAGTTTCTA 1058
Query 1117 GAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGCTTAAAGATGAGCATAAAGTG 1176
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1059 GAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGCTTAAAGACGAGCATAAAGTG 1118
Query 1177 TTTCTGGTTAGAGCGTTGGTACCTCTTCACAAACCGAAAAGCTTGCAAATGTATCATCAG 1236
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 TTTTTGGTTAGAGCTTTGGTACCTCTTCACAAACCGAAAAGCTTGCAAATGTATCATCAG 1178
Query 1237 CAATTGTCTTATTGTATCACACAGTTTGTGGAAAAAGATTGCAAACTTGCTGATACGGTT 1296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1179 CAATTGTCTTATTGTATCACACAGTTTGTGGAAAAAGATTGCAAACTCGCTGATACGGTT 1238
Query 1297 ATAAGAGGACTACTCAAGTCTTGGCCCGTCACAAATAGTTCCAAAGAAGTCATGTTTCTA 1356
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1239 ATAAGGGGACTACTCAAGTCTTGGCCTGTCACAAATAGTTCCAAAGAAGTCATGTTTCTA 1298
Query 1357 AACGAGCTAGAGGAAGTATTAGAAGCAACTCAACCACCAGAATTCCAGCGATGTATGGTC 1416
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1299 AACGAGCTAGAGGAAGTATTAGAAGCAACTCAACCACCTGAATTCCAACGGTGTATGGTC 1358
Query 1417 CCGTTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGGTTGCCGAAAGA 1476
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1359 CCATTGTTTCGCCAAGTTGCTCGGTGTTTGAACAGTCTCCATTTTCAGGTTGCAGAAAGA 1418
Query 1477 GCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGTAAAGTG 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1419 GCTTTGTTCTTATGGAACAACGATCATATCGAGAATCTAATAATGCAGAACCGGAAAGTT 1478
Query 1537 ATTCTTCCAATCATTTTCCCTGCATTGGAAAGAAACACTCAGAAGCATTGGAACCAAGCT 1596
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1479 ATTCTTCCAATCATATTCCCTGCATTGGAGAGAAACACTCAGAAGCATTGGAACCAAGCT 1538
Query 1597 GTTCATAGCTTAACGCTGAACGTGCAGAAGATATTTAATGACATTGATGCAGAGTTGTTC 1656
||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1539 GTTCATAGCTTGACGTTGAATGTGCAGAAGATCTTTAATGACATTGATGCAGAGTTGTTT 1598
Query 1657 AAGGAATGTCTTGCTAAGTTTAGAGAAGATGAATCGAAAGAAGCTGAAATTGACGCAAAA 1716
||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1599 AAGGATTGTCTTGCTAAGTTTAGAGAAGATGAATCAAAAGAAGCTGAAATTGGCGCAAAA 1658
Query 1717 CGTGAGGCGATATGGAAACGGTTGGAAGAAATTGGTAATCAAAAGCAGAAGAGTTCATTG 1776
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1659 CGTGAGGCAACGTGGAAACGGTTGGAAGAAATTGGTAATCAAAAGCAAAAGAGTTCATTG 1718
Query 1777 TAAGATGTTTTAGTTGTAGAGACAGAGGTTTTGTTCTGTAATTTCTTGTTTTTTACTACA 1836
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1719 TAAGATGTTTTAGTTGTAGAGACAGAGGTTTTGTTCTGTATTTTCTCGTTTTTTACTACA 1778
Query 1837 TTGGAAACTAGGGtttttttttttttttATCTCTCCAGAAAAACTTAGTGAGAAAAA-GT 1895
||||||| | |||||| ||||| || | ||||||||||||||||||||||||||| ||
Sbjct 1779 TTGGAAAATTGGGTTTGTTTTTCTT---A-CTCTCCAGAAAAACTTAGTGAGAAAAAAGT 1834
Query 1896 TTCAGATTCGTCTTCTTTGAAGAGATTGCAAA 1927
||||||||||| ||||||||||||||||||||
Sbjct 1835 TTCAGATTCGTTTTCTTTGAAGAGATTGCAAA 1866
> AT3G26020.4 | Symbols: | Protein phosphatase 2A regulatory B
subunit family protein | chr3:9513696-9516869 FORWARD LENGTH=2271
Length=2271
Score = 721 bits (390), Expect = 0.0
Identities = 583/678 (86%), Gaps = 6/678 (1%)
Strand=Plus/Plus
Query 499 TTTACGCCGTATGAAGCATTGCCGGGTTTTAAAGATGTTCCAAATGCAGAAAAGCAGAAC 558
||||| || ||||||||||||||| ||||||||||||||||||| | |||||||| |||
Sbjct 659 TTTACTCCTTATGAAGCATTGCCGAGTTTTAAAGATGTTCCAAACACGGAAAAGCAAAAC 718
Query 559 TTGTTTGTGAAAAAGCTCAACTTGTGCTGTGTACCGTTCGATTTCTCGGATCCAACGAAG 618
||||| | |||||| | ||||||||| ||||| ||| |||||| ||||||| || |||
Sbjct 719 TTGTTCATTAAAAAGTTGAACTTGTGCCGTGTAGTGTTTGATTTCACGGATCCTACAAAG 778
Query 619 AACGTTAAGGAAAAGGAGATTAAGCGGCAGACATTGCTTGAGCTTGTGGATTATGTGGCT 678
||| | |||||||| || |||||| ||||||||||||| |||||||||||||||||| |
Sbjct 779 AACATCAAGGAAAAAGATATTAAGAGGCAGACATTGCTGGAGCTTGTGGATTATGTGAAT 838
Query 679 TCTCCCAATGGAAAGTTCAGCGAA-ACGGTTATTCAAGAAGTGGTTAGAATGGTTTCTGT 737
||||| ||||||||||| |||||| ||| ||| |||||||| ||| | ||||| ||||
Sbjct 839 TCTCCTAATGGAAAGTTTAGCGAAGTCGG-TATCCAAGAAGTCGTTCGGATGGTCTCTGC 897
Query 738 TAATATATTCAGAAC-CTTGAATCCTCAACCGCGCGAGAATAAAGTTATTGATGCCTTAG 796
||| ||||| ||||| | | ||||||||||| || || ||||||||||| ||||||||||
Sbjct 898 TAACATATTTAGAACGC-TAAATCCTCAACCACGGGAAAATAAAGTTATCGATGCCTTAG 956
Query 797 ACGTGGAGGAAGAAGAGCCTTCTATGGATCCTACGTGGCCTCACTTGCAGCTTGTCTATG 856
|| ||||||| ||||| ||||| ||||||| | |||||||||||||||||||||| ||||
Sbjct 957 ACCTGGAGGAGGAAGAACCTTCCATGGATCTTGCGTGGCCTCACTTGCAGCTTGTGTATG 1016
Query 857 AGATTCTCCTGCGGCTTATTGCTTCACCCGAGACAGACACCAAGCTGGCTAAGAAATACA 916
|| || || || || || ||||||| || || || ||||||||||||||||||| ||| |
Sbjct 1017 AGCTTTTCTTGAGGTTTGTTGCTTCGCCTGAAACTGACACCAAGCTGGCTAAGAGATATA 1076
Query 917 TTGACCAATCTTTTGTCTCACGGATACTTGATTTATTTGATTCCGAGGATCCTAGAGAAA 976
| || ||||||||||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct 1077 TAGATCAATCTTTTGTCTTGCGGTTACTGGATTTATTTGATTCCGAGGATCCTAGAGAAA 1136
Query 977 GAGATTGTCTTAAGACCGTTCTACATCGCATCTACGGTAAATTTATGGTTCATCGTCCTT 1036
|||||||||| || ||| |||| ||||| ||||| |||||||||||||| || || ||||
Sbjct 1137 GAGATTGTCTGAAAACCATTCTCCATCGGATCTATGGTAAATTTATGGTACACCGACCTT 1196
Query 1037 TCATAAGGAAATCCATTAACAACATTTTCTATCGGTTTGTTTTCGAGACTGAGAAACATA 1096
|||| |||||||||||||||||||| |||||| ||||||||||||| || ||||||||||
Sbjct 1197 TCATCAGGAAATCCATTAACAACATCTTCTATAGGTTTGTTTTCGAAACAGAGAAACATA 1256
Query 1097 ACGGGATTGCTGAGTTTCTAGAGATTTTGGGAAGTATCATCAATGGATTTGCTCTGCCGC 1156
| |||||||||||||||||||| || ||||||||||||||||||||||| ||||| || |
Sbjct 1257 ATGGGATTGCTGAGTTTCTAGAAATCTTGGGAAGTATCATCAATGGATTCGCTCTTCC-C 1315
Query 1157 TT-AAAGATGAGCATAAA 1173
|| ||||| ||||| |||
Sbjct 1316 TTGAAAGACGAGCACAAA 1333
Score = 235 bits (127), Expect = 1e-60
Identities = 184/212 (87%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 1254 CACACAGTTTGTGGAAAAAGATTGCAAACTTGCTGATACGGTTATAAGAGGACTACTCAA 1313
|||| | ||||||||||| ||||||||||||||||||||||||||||||||| | | ||
Sbjct 1328 CACA-AATTTGTGGAAAAGGATTGCAAACTTGCTGATACGGTTATAAGAGGATTGTTGAA 1386
Query 1314 GTCTTGGCCCGTCACAAATAGTTCCAAAGAAGTCATGTTTCTAAACGAGCTAGAGGAAGT 1373
| ||||||||| ||||| ||||||||||||||||||||||| |||||| | ||||||||
Sbjct 1387 ATATTGGCCCGTGACAAACAGTTCCAAAGAAGTCATGTTTCTGAACGAGTTGGAGGAAGT 1446
Query 1374 ATTAGAAGCAACTCAACCACCAGAATTCCAGCGATGTATGGTCCCGTTGTTTCGCCAAGT 1433
| | ||||||||||| ||||||||||| || || || ||||| || ||||||||||| |
Sbjct 1447 ACTCGAAGCAACTCAGCCACCAGAATTTCAACGGTGCATGGTACCACTGTTTCGCCAAAT 1506
Query 1434 TGCTCGGTGTTTGAACAGTCTCCATTTTCAGG 1465
||||| |||||||||||||| ||||||||||
Sbjct 1507 AGCTCGATGTTTGAACAGTCTGCATTTTCAGG 1538
Score = 65.8 bits (35), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 283 TAATAAACTATGTGGAAACAGATTCTAAGTAAGCTTCC 320
||| ||||||||||||||||||||||||||||||||||
Sbjct 389 TAAGAAACTATGTGGAAACAGATTCTAAGTAAGCTTCC 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95431236045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5