BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471506
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13470.1 | Symbols: | Protein of unknown function (DUF1262)... 1408 0.0
AT1G13480.1 | Symbols: | Protein of unknown function (DUF1262)... 416 2e-115
> AT1G13470.1 | Symbols: | Protein of unknown function (DUF1262)
| chr1:4620228-4621580 REVERSE LENGTH=1272
Length=1272
Score = 1408 bits (762), Expect = 0.0
Identities = 869/922 (94%), Gaps = 2/922 (0%)
Strand=Plus/Plus
Query 295 CCTGTCGTTTTCATTCCGGTTCTTGATCAGCCCTTATCTTCAAACCGTTACTATGCCATT 354
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 264 CCTGTCGTTTTCATTCCTGTTCTTGATCAACCCTTATCTTCAAACCGTTACTATGTCATT 323
Query 355 AAAGGAAGCGGGAAACACTCAGGAGAAGCTTCGGCTAATGCAAAAGAGGAAGACAGAGTC 414
||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 324 AAACGAGGCGGGAAACACTCAGGAAAAGCTTCGGCTAATGCGAAAGAGGAAGACAGAGTC 383
Query 415 CCCTGCTGTTTTTGTTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CCCTGCTGTTTTTGTTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAAT 443
Query 475 GACATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTGTTACACTGCC 534
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 444 GACATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTATTACACTGCC 503
Query 535 ACTTCTGTTGCTCCTAACGGGATACCACCAAAGTTTCTAAAGACAAAGTATTGGAACGTT 594
|||||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||| |
Sbjct 504 ACTTCTGTTGCTCCTAACGGGAAACCACCAGAGTTTCTTAAGAGAAAGTATTGGAACGCT 563
Query 595 GAGTATTCGACATCAAAAGACTTTGGTCTAAGAGATGATGCAAAAGGTATTTACACTGAG 654
||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 564 GAGTACTCGACATCTGAGGACTTTGGTCTAAAAGATGATGCAAAAGGTATTTACACTGAG 623
Query 655 ATTCGTTCTGAGCTTCCTAATGATGTGAATACAAGTGTTGTGGTAGGAAAATGGTATGTC 714
||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||
Sbjct 624 ATTCGTTCTGAGCTTCCTAGTGATTTTAATACAAGCGTTGTGGTAGGAAAATGGTATGTC 683
Query 715 CCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAACTTATTAC 774
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 684 CCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAGCTTATTAC 743
Query 775 AGCATGATTCTTATTA-AAAGATGGGAAGAGGTTTATTCTTGTGAAAACGCGTATAACGA 833
|||||||||||| | | |||||||||| |||||||| |||||||||||||| || |||||
Sbjct 744 AGCATGATTCTTCT-ACAAAGATGGGAGGAGGTTTACTCTTGTGAAAACGCTTACAACGA 802
Query 834 AAACCGCGAAGTTGTAGTTAATGTTGAAGTGGAAACAGAAGTTGTGAAGCTTGAAGGACA 893
||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 803 AAACCGCGAGGTTGTAGTTGATGTTGAAGTGGAACCAGAAGTTGTGAAGCTTGAGGGACA 862
Query 894 AGAGATTGGGAAAAATACAAAAAGTGTGGATGAAAATGGGGTTGTTTGGTTTGCGGTTGC 953
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 863 AGAAATTGGGAAAAATACAAAAAGGGTGGATGAAAATGGGGTTTTTTGGTTTGCGGTTGC 922
Query 954 AGACAAGAGGATAGGTTTGAGATCTGCGGTCATGGAGAGAATGAAATGGGAAGAGGAGAG 1013
||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 923 AGAGAAGAGGATAGGTTTGAGATCTGTGGTCATGGAGAGGATGAAATGGGAAGAGGAGAG 982
Query 1014 ATTTGGGTGGAAAAGCGAACCGCGAAGAGCAGTGGTTAAGAAATCTGAGAGATTTGATGG 1073
||| |||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 983 ATTCGGGTGGAAGATTGAACCGCAAAGAGCAGTGGTTAAGAAATCTGAGAGATTTAATGG 1042
Query 1074 AGGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTTGAGTTGAG 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1043 AGGCGGTTCGAATTGGAAGAGTTATAGATGTTATGTGTTGGTGGAGAGCTTTGAATTGAG 1102
Query 1134 GAGAAAGGATGAGAGTTTAGTATTGTCATTTGATTTTAAACATGTTGATAAGTTGAGAAC 1193
|||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1103 GAGAAAGGATAAGAGTTTAGTGTTGACATTTGAGTTTAAGCATGTTGATAAGTTGAGAAC 1162
Query 1194 CAAGTGGGAATCATGAAAGATT 1215
|||||||||||||||| |||||
Sbjct 1163 CAAGTGGGAATCATGAGAGATT 1184
Score = 359 bits (194), Expect = 4e-98
Identities = 227/242 (94%), Gaps = 5/242 (2%)
Strand=Plus/Plus
Query 1 AAAAACCACTGAAATATCTTCACCGGTTATAACaaaaaaaTGTATGTTACAAGGCGTTTG 60
||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 1 AAAAACCACTGAAATATCTTCGCCGGTTATAAC-CAAAAATGTATGTTACGAGGCGTTTG 59
Query 61 TCGGAATACCAAAGAAACAGATCGGAGTTGCCGGAAAGTCCAAACTCCGGCGTACTTATA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCGGAATACCAAAGAAACAGATCGGAGTTGCCGGAAAGTCCAAACTCCGGCGTACTTATA 119
Query 121 ATTCAAGATGATGAGTCAAAGCCAACTTGTTGCTTCGGATCTTGCTAC-GAGGCTAAACT 179
||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| |||
Sbjct 120 ATTCAAGATGAAGAGTCAAGGCCAACTTGTTGCTTCGGATCTTGCTACCG-GGCTACACT 178
Query 180 CAAAGGCTTACCGTTTCC-ACAGAACGCGAAGCTGAGTGTATATGAAAGCCGCACATTTC 238
|||||||||||| ||||| |||||||||||| |||| ||||| ||||||||||| |||||
Sbjct 179 CAAAGGCTTACC-TTTCCCACAGAACGCGAACCTGATTGTATCTGAAAGCCGCATATTTC 237
Query 239 TT 240
||
Sbjct 238 TT 239
> AT1G13480.1 | Symbols: | Protein of unknown function (DUF1262)
| chr1:4622634-4624070 REVERSE LENGTH=1340
Length=1340
Score = 416 bits (225), Expect = 2e-115
Identities = 718/945 (76%), Gaps = 77/945 (8%)
Strand=Plus/Plus
Query 304 TTCATTCCGGTTCTTGATCAGCCCTTATCTTCAAACCGTTACTATGCCATT--AAAGGAA 361
|||||||| |||||||||||||| || |||||||||| |||||||| || |||||
Sbjct 274 TTCATTCCTGTTCTTGATCAGCCATTGTCTTCAAACCTTTACTATG-TTTTACAAAGG-C 331
Query 362 GCGGGAAACACT-CAGG-AGAAGCTTCGGCTAA-TGCAAAAGAGGAAGACAGAGTCCCCT 418
| ||||| || | | || | |||| || || || ||||| |||||| || || || |
Sbjct 332 GTGGGAAGCA-TACTGGCA-AAGCATCTGC-AAGTGCAACAGAGGAGGAGAGGGTTTCAA 388
Query 419 GCTGTTTTTG-TTTCAGCTATGTTCCTGAAGCTAAGCCACAAGAAGCAGATCCTAATGAC 477
|||| ||||| ||| |||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct 389 GCTGCTTTTGCTTT-AGCTATATTCCTGACGCTAAGCCACAAGAAGCAGATCCTTATGAC 447
Query 478 ATATATCAGCAATTCCAGATCCATCAAAAACGATCATCATCTCGCTGTTACACTGCCACT 537
||||| || |||||| ||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 448 ATATACCAACAATTCGAGATCCATCAACGCCGATCATCATCTCGCTATTACTCTGCCACT 507
Query 538 TCTGTTGCTCCTAACGG-GATACCACCAAAGTT-TCTAAAGA-CAAAGTATTGGAACGTT 594
||||||||| || | || | |||||||||| || || |||| |||| ||||| | |
Sbjct 508 TCTGTTGCTTCTGATGGTG-TACCACCAAA-TTACCTTAAGAGGAAAG-ATTGG-TGGGT 563
Query 595 GAG-TATTCGACATCAAAAGACTTTGGTCTAAGAGATGATGCAAAAGGTATTTACACTGA 653
|| || ||||| || | ||||||||||||||||||||||||||||| ||| |||| |
Sbjct 564 CAGCTACTCGACTTCGCACGACTTTGGTCTAAGAGATGATGCAAAAGGGATTAACACAAA 623
Query 654 GATTCG-TT---CTGAG--CTTCCTAATG-ATGTGAATACAAGTGTTGTGGTAGGAAAAT 706
| |||| || || || ||| ||| | | || || | || ||| | |||| ||||
Sbjct 624 GCTTCGCTTAGACTCAGAACTTACTAGTTTAGGT-AAGA---GTATTGAGATAGGGAAAT 679
Query 707 GGTATGTCCCTTTCATATTTGTGAAGGAAGGAAATGCAAAGGATCAGCTTAAGAGCTCAA 766
||||||| |||||||||||||||| ||||||| ||| ||| |||||| | || | || |
Sbjct 680 GGTATGTTCCTTTCATATTTGTGATGGAAGGAGATGTAAAAGATCAGATGAACAAATCGA 739
Query 767 C-TTATTACAGCATGATTCTT-ATTAAAAGATGGGAAGAGGTTTA-TTCTTGTGAAAACG 823
| || ||||||| ||| ||| | ||| |||||||||| |||| |||| | ||||||
Sbjct 740 CGTT-TTACAGCGTGACACTTCAACAAA-GATGGGAAGAAGTTTTCTTCT-GCGAAAACA 796
Query 824 C-GTATAACGAAAACCGCGAAGTTGTAGTTAATGTTGAAGTGGAAACAGAAGTTG-TGAA 881
| || ||| | || ||||||||| ||||||| || ||||||||| | | ||||
Sbjct 797 TTGGC-AATGAACATTTTGAGGTTGTAGTTGATGTTGATGTAGAAACAGAA-TCGGTGAA 854
Query 882 GCTTGAAGGACAAGAGA-T--TGGGAAAAATACAAAAAGTGTGGATGAAAATGGGGTTG- 937
|||||| |||||||| | | | || | | | || ||| ||| | || |||
Sbjct 855 GCTTGAGGGACAAGAAACTAATTTGAGAGAGG-ATTCAG-GTG-ATGGAGTTGT--TTGG 909
Query 938 TTT-G-GT-TTGCGGT-TGC-A--GAC-A-A-GAGGATAGGT-TTGAGATCTGCGGTCAT 986
||| | || || || || | ||| | | || ||||||| ||| |||||| |||| |
Sbjct 910 TTTAGTGTCTTAAGGGATGAGAAAGACGACAAGAAGATAGGTCTTG-GATCTGTGGTCGT 968
Query 987 GGAGAGAATGAAATGGGAAGAGGAGAGATTTGGGTGGA-AAAGCGAACC-G-CGAA-GAG 1042
||||| ||||||||||||||||| || ||||| ||| ||| |||| | | |||| ||
Sbjct 969 AGAGAGGATGAAATGGGAAGAGGAAAGGTTTGGATGGTTAAA-CGAAGCAGGCGAAAGAT 1027
Query 1043 C-AGTGGTTAAGAAATCTGAGAGATTTGATGGAGGCGGTTC---GAATTGGAAGAGTTAT 1098
| | |||||| ||| ||||||||||| ||||||||| | ||||||||||||||
Sbjct 1028 CTAACA-TTAAGAGATCAGAGAGATTTGA---AGGCGGTTCATCGCATTGGAAGAGTTAT 1083
Query 1099 AGATGTTATGTGTTGGTGGAGAGCTTTGAGTTGAGGAGAAAGGATGAGAGTTTAGTATTG 1158
|||||||||| ||| | ||||||||||| |||| ||||| ||||| |||||| || |||
Sbjct 1084 CGATGTTATGTATTGATAGAGAGCTTTGAATTGACGAGAATGGATGGGAGTTTGGTGTTG 1143
Query 1159 TCATTTGATTTTAAACATGTTGATAAGTTGA-GAACCAAGTGGGA 1202
||| ||| |||| |||||||||||| | | || | ||||||||
Sbjct 1144 ACATATGAGTTTAGGCATGTTGATAAGCTAAAGAGC-AAGTGGGA 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5