BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471516 Length=1564 Score E Sequences producing significant alignments: (Bits) Value AT1G13570.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2324 0.0 > AT1G13570.1 | Symbols: | F-box/RNI-like superfamily protein | chr1:4642346-4644422 REVERSE LENGTH=1614 Length=1614 Score = 2324 bits (1258), Expect = 0.0 Identities = 1419/1497 (95%), Gaps = 9/1497 (1%) Strand=Plus/Plus Query 1 GAGATTATGAAATAGACTTTTGGCC-AAACGCTAACTATAATTGCAAAAGTAAGAAAATC 59 ||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||| Sbjct 6 GAGATTATGAAATTGACTTTTGGCCAAAACGCTAACTTTAATCGCAAAAGTAAGAAAATC 65 Query 60 TAGTAAAAGAGATGATGAGAGCAAAATCTGCGATCTTCTGCTATTTCCCCATTTGAAACT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TAGTAAAACAGATGCTGAGAGCAAAATCTGCGATCTTCTGCTATTTCCCCATTTGAAACT 125 Query 120 TCACCGATCAAGCCGGTCACTGCTCCAGC-GAAC--CGGAACAAGGAGACAAAAAGATGG 176 ||||| |||||||||||||||||||| | || | |||||||||||||||||||||||| Sbjct 126 CCACCGTTCAAGCCGGTCACTGCTCCAACGGACCGGCGGAACAAGGAGACAAAAAGATGG 185 Query 177 GTGAATCTCCAGATTTCATAAGCGATCTTCCTCAAAGCATTATTGAGAATATACTTACTC 236 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 186 GTGAATCTCCAGATTTCATAAGCGATCTACCTCAAAGCATTATTGAGAATATCCTTACTC 245 Query 237 GGCTTTCGATTAGAGATGCAATAAGAACAAGTGTGTTATCTAGCAAATGGAGATATAAAT 296 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 246 GGCTTTCGATTAGAGATGCAATAAGAACAAGTGTATTATCTAGCAAATGGAGATATAAAT 305 Query 297 GGTCTACACTCACTGATCTTGTGTTTGATGAGAAATGTGTTTCTCCTGCTAATGACCGTT 356 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 306 GGTCTACACTCACTGATCTTGTCTTTGATGAGAAATGTGTTTCTCCTTCTAATGACCGTT 365 Query 357 GCGTTGTTGAGACTAGTCTTGTGAGATTTATTACTGGAGTGCTTCTCCTTCACCAAGGAC 416 | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 366 GTGTTGTTGAGACTAATCTTGTGAGATTCATTACTGGAGTGCTTCTCCTTCACCAAGGAC 425 Query 417 CTATCCATAAGTTTCAGCTCTCTACTTCTTTCTTACAATGTCGTCCCGATATTGATCAGT 476 ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 426 CTATCCACAAGTTTCAGCTCTCTACTTCTTTCAAACAATGTCGTCCAGATATTGATCAGT 485 Query 477 GGTTGCTTTTTCTTTCGAGGAATGGGATTAAGGAGCTTGTTCTTGAGTTAGGAGAAGGAG 536 |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| Sbjct 486 GGTTGCTTTTTCTTTCGAGGAACGGGATTAAGGAGCTTGTTCTTAAGTTAGGTGAAGGAG 545 Query 537 AATTCAGGGTTCCTTCATGTCTCTTTAACTGTTTGAAACTGACCCGTTTGGAGTTATGTC 596 |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 546 AATTCAGGGTTCCTGCATGTCTCTTTAACTGTTTGAAATTGACCTGTTTGGAGTTATGTC 605 Query 597 ATTGTGAGTTTGATCCGCCTCAGTATTTCAAAGGGTTTTCGTCTCTGAAGAGTTTAAACC 656 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 606 ATTGTGAGTTTGATCCGCCTCAGTATTTCAAAGGGTTTTCGTATCTGAAGAGTTTAAACC 665 Query 657 TTCACCAAATCCTTGTTGGTCCTGAGGTGATTGAAAGTCTGATCTCAGGGTGTCCGCTTC 716 ||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||| Sbjct 666 TTCACCAGATCCTTGTTGCTCCTGAGGTTATTGAAAGTCTGATCTCAGGATGTCCGCTTC 725 Query 717 TCGAGTTCCTGTCTTTGTCTTACTTTGACAGTTTGGTTTTGAGTATATCTGCTCCGAATC 776 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 726 TCGAGTTCCTGTCTTTGTCTTACTTTGACAGTTTGGTTTTGAGTATATCAGCTCCGAATC 785 Query 777 TCATGTACTTGTATCTAGACGGCGAATTCAAAGACATTTTCCTCGAGAATACTCCCAAGT 836 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 786 TCATGTACTTGTATCTAGACGGCGAATTCAAAGACATTTTCCTCGAGAATACGCCCAAGC 845 Query 837 TAGTTGCAATATCGGTTTCAATGTACATGCATGAGGACGTTACTGATTTTGAGCAGAGTT 896 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 846 TAGTTGCAATATCGGTTTCAATGTACATGCATGAGGATGTTACTGATTTTGAGCAGAGTT 905 Query 897 CGGATTATAATCTAGTTAAGTTCCTTGGCGGTGTGCCCCTTCTTGAGAAGCTCGTTGGTT 956 ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 906 CGGATTATAATCTCGTTAAGTTCCTTGGTGGTGTGCCCCTTCTTGAGAAGCTCGTCGGTT 965 Query 957 ATATCTACTTCACAAAGTACTTGAGTATAGGAGATGACCCGGGAAGGCTTCCAATTACTT 1016 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 966 ATATCTACTTCACAAAGTACTTGAGTATAGGAGATGACCCGGGAAGGCTTCCACTTACTT 1025 Query 1017 ACATTCATCTTAAAACTATAGAACTTTACCAAGTAAGCTTCGAAGATGCTAATGAGATAC 1076 |||| |||||||||||||||||||||||||||||| |||| |||||||| ||||| | | Sbjct 1026 ACATACATCTTAAAACTATAGAACTTTACCAAGTATGCTTTGAAGATGCCGATGAGGTGC 1085 Query 1077 TAGTTCTTCTTCGTTTGGTCACTCACTCTCCCAACCTTAAAGAGCTCAAAGTTTCGGCTT 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 TAGTTCTTCTTCGTTTGGTCACTCACTCTCCCAACCTTAAAGAGCTCAAAGTTTCGGCTT 1145 Query 1137 CACCAATCCAACTATTTCCTCTTGAAGAAGAAGGTTTTGACCTTTTCGAAAGAGATTACT 1196 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1146 CACCAGTCCAACCATTTCCTCTTGAAGAAGAAGGTTTTGACCTTTTCGAAAGAGATTACT 1205 Query 1197 TCGACTACAAACTCCCGAGCCTTGAAA-CTGTGAAGATGACAGACGTATCTGGCATCAGA 1255 |||||||||||||||| |||||||||| | |||||||| ||||||| |||||||||||| Sbjct 1206 TCGACTACAAACTCCCAAGCCTTGAAAGC-GTGAAGATAACAGACGCCTCTGGCATCAGA 1264 Query 1256 AATGAGTTGGAATTTATCAGATTCTTGCTGGGAACTTCTCCAGTTTTGGAGACAGTCATT 1315 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1265 TATGAATTGGAATTTATCAGATTCTTGCTGGGAACTTCACCAGTTTTGGAGACAGTCACT 1324 Query 1316 GTATCATCGAGTTTAAT-AGATAAAGAAGCGAAAATGGATATGGTAATCGAATTGCTCAG 1374 |||||||| |||||| | ||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1325 GTATCATCAAGTTTA-TCAGATAAAGATGCGAAAATGGATATGGTTATCGAATTGCTCAG 1383 Query 1375 GTATCCGCGTGTCTCTCCTCGAGCTCAGCTCCTCTTCCTTCAAGACTGAAATCTGACTCC 1434 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1384 GTATCCACGTGTCTCTCCTCGAGCTCAGCTCCTCTTCCTTCAAGACTGAAATCTGATTCC 1443 Query 1435 CCTTCTCCATCTCTCTCCCTCCCTCTGTGTTATCATATCATGACTGAACATGTTTTG 1491 ||||||||||||||||||||| |||| | || | ||||||| || ||||||||||| Sbjct 1444 CCTTCTCCATCTCTCTCCCTCTCTCTCT-TTCTGTTATCATGTCTAAACATGTTTTG 1499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77208438210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5