BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471516
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13570.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2324 0.0
> AT1G13570.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:4642346-4644422 REVERSE LENGTH=1614
Length=1614
Score = 2324 bits (1258), Expect = 0.0
Identities = 1419/1497 (95%), Gaps = 9/1497 (1%)
Strand=Plus/Plus
Query 1 GAGATTATGAAATAGACTTTTGGCC-AAACGCTAACTATAATTGCAAAAGTAAGAAAATC 59
||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 6 GAGATTATGAAATTGACTTTTGGCCAAAACGCTAACTTTAATCGCAAAAGTAAGAAAATC 65
Query 60 TAGTAAAAGAGATGATGAGAGCAAAATCTGCGATCTTCTGCTATTTCCCCATTTGAAACT 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TAGTAAAACAGATGCTGAGAGCAAAATCTGCGATCTTCTGCTATTTCCCCATTTGAAACT 125
Query 120 TCACCGATCAAGCCGGTCACTGCTCCAGC-GAAC--CGGAACAAGGAGACAAAAAGATGG 176
||||| |||||||||||||||||||| | || | ||||||||||||||||||||||||
Sbjct 126 CCACCGTTCAAGCCGGTCACTGCTCCAACGGACCGGCGGAACAAGGAGACAAAAAGATGG 185
Query 177 GTGAATCTCCAGATTTCATAAGCGATCTTCCTCAAAGCATTATTGAGAATATACTTACTC 236
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 186 GTGAATCTCCAGATTTCATAAGCGATCTACCTCAAAGCATTATTGAGAATATCCTTACTC 245
Query 237 GGCTTTCGATTAGAGATGCAATAAGAACAAGTGTGTTATCTAGCAAATGGAGATATAAAT 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 246 GGCTTTCGATTAGAGATGCAATAAGAACAAGTGTATTATCTAGCAAATGGAGATATAAAT 305
Query 297 GGTCTACACTCACTGATCTTGTGTTTGATGAGAAATGTGTTTCTCCTGCTAATGACCGTT 356
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 306 GGTCTACACTCACTGATCTTGTCTTTGATGAGAAATGTGTTTCTCCTTCTAATGACCGTT 365
Query 357 GCGTTGTTGAGACTAGTCTTGTGAGATTTATTACTGGAGTGCTTCTCCTTCACCAAGGAC 416
| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 366 GTGTTGTTGAGACTAATCTTGTGAGATTCATTACTGGAGTGCTTCTCCTTCACCAAGGAC 425
Query 417 CTATCCATAAGTTTCAGCTCTCTACTTCTTTCTTACAATGTCGTCCCGATATTGATCAGT 476
||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 426 CTATCCACAAGTTTCAGCTCTCTACTTCTTTCAAACAATGTCGTCCAGATATTGATCAGT 485
Query 477 GGTTGCTTTTTCTTTCGAGGAATGGGATTAAGGAGCTTGTTCTTGAGTTAGGAGAAGGAG 536
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 486 GGTTGCTTTTTCTTTCGAGGAACGGGATTAAGGAGCTTGTTCTTAAGTTAGGTGAAGGAG 545
Query 537 AATTCAGGGTTCCTTCATGTCTCTTTAACTGTTTGAAACTGACCCGTTTGGAGTTATGTC 596
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 546 AATTCAGGGTTCCTGCATGTCTCTTTAACTGTTTGAAATTGACCTGTTTGGAGTTATGTC 605
Query 597 ATTGTGAGTTTGATCCGCCTCAGTATTTCAAAGGGTTTTCGTCTCTGAAGAGTTTAAACC 656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 606 ATTGTGAGTTTGATCCGCCTCAGTATTTCAAAGGGTTTTCGTATCTGAAGAGTTTAAACC 665
Query 657 TTCACCAAATCCTTGTTGGTCCTGAGGTGATTGAAAGTCTGATCTCAGGGTGTCCGCTTC 716
||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||
Sbjct 666 TTCACCAGATCCTTGTTGCTCCTGAGGTTATTGAAAGTCTGATCTCAGGATGTCCGCTTC 725
Query 717 TCGAGTTCCTGTCTTTGTCTTACTTTGACAGTTTGGTTTTGAGTATATCTGCTCCGAATC 776
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 726 TCGAGTTCCTGTCTTTGTCTTACTTTGACAGTTTGGTTTTGAGTATATCAGCTCCGAATC 785
Query 777 TCATGTACTTGTATCTAGACGGCGAATTCAAAGACATTTTCCTCGAGAATACTCCCAAGT 836
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 786 TCATGTACTTGTATCTAGACGGCGAATTCAAAGACATTTTCCTCGAGAATACGCCCAAGC 845
Query 837 TAGTTGCAATATCGGTTTCAATGTACATGCATGAGGACGTTACTGATTTTGAGCAGAGTT 896
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 846 TAGTTGCAATATCGGTTTCAATGTACATGCATGAGGATGTTACTGATTTTGAGCAGAGTT 905
Query 897 CGGATTATAATCTAGTTAAGTTCCTTGGCGGTGTGCCCCTTCTTGAGAAGCTCGTTGGTT 956
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 906 CGGATTATAATCTCGTTAAGTTCCTTGGTGGTGTGCCCCTTCTTGAGAAGCTCGTCGGTT 965
Query 957 ATATCTACTTCACAAAGTACTTGAGTATAGGAGATGACCCGGGAAGGCTTCCAATTACTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 966 ATATCTACTTCACAAAGTACTTGAGTATAGGAGATGACCCGGGAAGGCTTCCACTTACTT 1025
Query 1017 ACATTCATCTTAAAACTATAGAACTTTACCAAGTAAGCTTCGAAGATGCTAATGAGATAC 1076
|||| |||||||||||||||||||||||||||||| |||| |||||||| ||||| | |
Sbjct 1026 ACATACATCTTAAAACTATAGAACTTTACCAAGTATGCTTTGAAGATGCCGATGAGGTGC 1085
Query 1077 TAGTTCTTCTTCGTTTGGTCACTCACTCTCCCAACCTTAAAGAGCTCAAAGTTTCGGCTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TAGTTCTTCTTCGTTTGGTCACTCACTCTCCCAACCTTAAAGAGCTCAAAGTTTCGGCTT 1145
Query 1137 CACCAATCCAACTATTTCCTCTTGAAGAAGAAGGTTTTGACCTTTTCGAAAGAGATTACT 1196
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 CACCAGTCCAACCATTTCCTCTTGAAGAAGAAGGTTTTGACCTTTTCGAAAGAGATTACT 1205
Query 1197 TCGACTACAAACTCCCGAGCCTTGAAA-CTGTGAAGATGACAGACGTATCTGGCATCAGA 1255
|||||||||||||||| |||||||||| | |||||||| ||||||| ||||||||||||
Sbjct 1206 TCGACTACAAACTCCCAAGCCTTGAAAGC-GTGAAGATAACAGACGCCTCTGGCATCAGA 1264
Query 1256 AATGAGTTGGAATTTATCAGATTCTTGCTGGGAACTTCTCCAGTTTTGGAGACAGTCATT 1315
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1265 TATGAATTGGAATTTATCAGATTCTTGCTGGGAACTTCACCAGTTTTGGAGACAGTCACT 1324
Query 1316 GTATCATCGAGTTTAAT-AGATAAAGAAGCGAAAATGGATATGGTAATCGAATTGCTCAG 1374
|||||||| |||||| | ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1325 GTATCATCAAGTTTA-TCAGATAAAGATGCGAAAATGGATATGGTTATCGAATTGCTCAG 1383
Query 1375 GTATCCGCGTGTCTCTCCTCGAGCTCAGCTCCTCTTCCTTCAAGACTGAAATCTGACTCC 1434
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1384 GTATCCACGTGTCTCTCCTCGAGCTCAGCTCCTCTTCCTTCAAGACTGAAATCTGATTCC 1443
Query 1435 CCTTCTCCATCTCTCTCCCTCCCTCTGTGTTATCATATCATGACTGAACATGTTTTG 1491
||||||||||||||||||||| |||| | || | ||||||| || |||||||||||
Sbjct 1444 CCTTCTCCATCTCTCTCCCTCTCTCTCT-TTCTGTTATCATGTCTAAACATGTTTTG 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5