BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471517
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13580.2 | Symbols: LAG13 | LAG1 longevity assurance homolog... 1969 0.0
> AT1G13580.2 | Symbols: LAG13 | LAG1 longevity assurance homolog
3 | chr1:4644613-4646853 REVERSE LENGTH=1408
Length=1408
Score = 1969 bits (1066), Expect = 0.0
Identities = 1189/1247 (95%), Gaps = 14/1247 (1%)
Strand=Plus/Plus
Query 2 GGTTCAAAGAGAGGATTTTTCGGAGATGGGTTTGTTGGAATCGATGAAATCAATCAACTG 61
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 64 GGTTTAAAGAGAGGATTTTACGGAGATGGGTTTGTTGGAATCGGTGAAATCAATCAACTG 123
Query 62 GGAACATGAATCATCTCCGGTTTATCAGGATTTTCGAGTTCTTCCTCTCTTTGCAGTGTT 121
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 124 GGAACATGAATCATCTCCGGTTTATCAGGATTTTCGAGTTCTTCCTCTCTTCGCTGTGTT 183
Query 122 CTTCCCTACTATTCGATTTCTCCTCGATAGATTCGTCTTCGAGAAATTGGCAAAACATTT 181
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 184 CTTCCCTTCGATTCGATTTCTCCTCGATAGATTCGTCTTCGAGAAATTGGCAAAATATTT 243
Query 182 GATATATGGAAAACATAGGCAGGATATGGGAGATGACACAACCGAGAGAAATAAGAAGAT 241
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 244 GATCTATGGAAAACATAGACAGGATATGGGAGATGACACAACCGAGAGAAAGAAGAAGAT 303
Query 242 CAGGAAATTCAAAGAATCTGCCTGGAAGTTTGTTTACTACCTGTCAGCTGAGATTCTTGC 301
|||||||||||||||||| |||||||||| ||||||||| || |||||||||||||||||
Sbjct 304 CAGGAAATTCAAAGAATCGGCCTGGAAGTGTGTTTACTATCTATCAGCTGAGATTCTTGC 363
Query 302 TTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGCCC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 364 TTTATCTGTGACTTACAATGAGCCTTGGTTTATGAACACTAAATACTTTTGGGTAGGGCC 423
Query 362 TGGAGATCAGACTTGGCCTGATCAACAAACAAAGTTAAAATTGAAACTTTTGTATATGTT 421
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 424 TGGAGATCAGACTTGGCCTGATCAACAAACAAAGTTAAAGTTGAAGCTTTTGTATATGTT 483
Query 422 TGTGGCTGGGTTCTATACATACTCCATCTTTGCTCTGATTTTCTGGGAAACGAGGCGTTC 481
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 484 TGTGGCTGGTTTCTATACATACTCCATCTTTGCTCTGGTTTTCTGGGAAACGAGGCGTTC 543
Query 482 TGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTCCTCTCATA 541
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 544 TGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATA 603
Query 542 CGTATGTAGCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCTCTTCATGATGCTAGTGATGT 601
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 604 CGTATGTAGCTTCTCCCGTGTTGGTTCTGTTGTTCTGGCACTTCACGATGCTAGTGATGT 663
Query 602 GTTTCTTGAAGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATCGCAAGCTTTTC 661
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GTTTCTTGAGGTTGGGAAAATGTCTAAATATAGTGGAGCTGAAAGAATCGCAAGCTTTTC 723
Query 662 ATTCATTCTTTTCGTTATGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGAT 721
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGAT 783
Query 722 CCTATGGAGCACAAGCTATGAAGTAGTTTTGGAGCTGGATAAAGACAAGCACCCAATCGA 781
||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 784 CCTATGGAGTACAAGCTATGAAGTAGTTTTGGAGCTTGATAAAGACAAGCATCCAATCGA 843
Query 782 AGGACCAATTTACTACTACATGTTTAACACTCTCCTATATTGCTTGCTTGTTCTTCACAT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGGACCAATTTACTACTACATGTTTAACACTCTCCTATATTGCTTGCTTGTTCTTCACAT 903
Query 842 TTACTGGTGGGTTTTGATGCATCGGATGCTTGTGAAACAAATACAAGATAGAGGCAAGCT 901
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTATTGGTGGGTTTTGATGTATCGGATGCTTGTGAAACAAATACAAGATAGAGGCAAGCT 963
Query 902 TAGTGAAGATGTCAGATCCGATTCTGAAGGCGAAGATGAGCACGAAGACTGATT-GATCA 960
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 964 TAGTGAAGATGTCAGATCAGATTCTGAAGGCGAAGATGAGCACGAAGACTGATTTGATCA 1023
Query 961 CAAAGGTAGAAGAGAAATGTAAAAGCACGGTGTTCTCTCTTAACATTAT-CGCAGATTCT 1019
|||||||||| ||||||||||||||||| ||||||||||| |||| || ||||||||||
Sbjct 1024 CAAAGGTAGAT-AGAAATGTAAAAGCACGTTGTTCTCTCTTTACAT-ATTCGCAGATTCT 1081
Query 1020 TTTGTTCT--GTCTCTGTGATTCTGATCGCTAATTGGTGTTTAAGAGTGGAG-AC-C-GA 1074
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | | ||
Sbjct 1082 TTTGTTCTCTGTCTCTGTGATTCTGATCGCTAATGGGTGTTTAAGAGTGGAGGAGACTGA 1141
Query 1075 GT-ATTCAATCTCCAACATTGGACCAACTCATGGAACAGAACTGATTAAGGAGACCTGAA 1133
|| || ||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 1142 GTCAT-CAATCTCTAACATTGGACCAACTCATGGAACATAACTGATTCAGGAGACATGAA 1200
Query 1134 ATTGTAGTTGTATTGAATTGTAGTCTGAACAAATTCCATATCTTCTTGTATTGTATTCAT 1193
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 ACTGTAGTTGTATTGAATTGTAGTCTGAACAAATTCCAGATCTTCTTGTATTGTATTCAT 1260
Query 1194 TTCTTGTTTAGGATCACTCACCAATTCATGATATATA-CAAATGTTG 1239
||||||||| ||||||||||||| ||||||||||||| ||| |||||
Sbjct 1261 TTCTTGTTTTGGATCACTCACCA-TTCATGATATATATCAA-TGTTG 1305
Score = 139 bits (75), Expect = 6e-32
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1079 TCAATCTCCAACATTGGACCAACTCATGGAACAGAACTGATTAAGGAGACCTGAAATTGT 1138
|||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||| |||
Sbjct 1316 TCAATCTCTAACATTGGACCAACTCATGGAACATAACTGATTCAGGAGACATGAAACTGT 1375
Query 1139 AGTTGTATTGAATTGTAGTCTGAACAAATT 1168
||||||||||||||||||||||||||||||
Sbjct 1376 AGTTGTATTGAATTGTAGTCTGAACAAATT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5