BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471519

Length=386
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13590.1 | Symbols: ATPSK1, PSK1 | phytosulfokine 1 precurso...   547    2e-155


> AT1G13590.1 | Symbols: ATPSK1, PSK1 | phytosulfokine 1 precursor 
| chr1:4647949-4648740 FORWARD LENGTH=422
Length=422

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 359/388 (93%), Gaps = 10/388 (3%)
 Strand=Plus/Plus

Query  1    aagaagaagaagaaacagaaagaaaa-aaattatgaagaggaaaagtgaagTGTTGTTCT  59
            |||||||||||| || | ||| |||| |||| ||||||| |||||||||||||||| |||
Sbjct  3    AAGAAGAAGAAG-AAGAAAAATAAAAGAAATGATGAAGACGAAAAGTGAAGTGTTGATCT  61

Query  60   TCTTCTTCACTCTAGTGTTGCTTTTAAGCATGGCTTCAAGTGTTATTTTAAGAGAAGATG  119
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  62   TTTTCTTCACTCTAGTATTGCTTTTAAGCATGGCTTCAAGTGTTATTTTAAGAGAAGATG  121

Query  120  GTTTTGCTCCTCCTAAACCATCTCCCACCACACATGAGAAAGCAAGAAGCAGTACTAAAG  179
            ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||
Sbjct  122  GTTTTGCTCCTCCTAAACCATCTCCCACCACACATGAGAAAGCAAG------TACTAAAG  175

Query  180  GTGACAGAGATGGAGTAGAGTGCAAGAATTTAGACAGTGAAGAAGAATGTCTTGTGAAGA  239
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  176  GTGACAGAGATGGAGTAGAGTGCAAGAATTCAGACAGTGAAGAAGAATGTCTTGTGAAGA  235

Query  240  AAACTGTAGCTGCTCACACCGATTACATCTATACACAAGATTTAAACCTATCTCCTTGAA  299
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  AAACAGTAGCTGCTCACACCGATTACATCTATACACAAGATTTAAACCTATCTCCTTGAA  295

Query  300  ACAAGAACCATTACTCTTTGTCTTTTATTTAGCAAATTATAAACATAAACCTTTGAAATG  359
            |||||||| ||||||||||||||||||||||||||| ||||  ||||| ||||||||| |
Sbjct  296  ACAAGAACTATTACTCTTTGTCTTTTATTTAGCAAACTATATGCATAAGCCTTTGAAAGG  355

Query  360  AGCTTTTCGCCGTTAAA-TCCAGCTCTT  386
            ||||| ||||| | ||| || |||||||
Sbjct  356  AGCTTCTCGCCCTCAAACTC-AGCTCTT  382



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18196925138


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5