BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471521

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G13609.1 | Symbols:  | Defensin-like (DEFL) family protein |...   475    1e-133


> AT1G13609.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:4662721-4663192 FORWARD LENGTH=380
Length=380

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 311/336 (93%), Gaps = 8/336 (2%)
 Strand=Plus/Plus

Query  1    TACACTAATTTCATTACAAACCAAACTAAAATAATATACATCGTTCCTTTCATATTCAAC  60
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  5    TACACTAATTTCATTACAAACCAAACTAAAATAATATACATCGTTCATTTCATATTCAAC  64

Query  61   AGAAGGAATCGGTTTCAAAACATAATTAGAGAGAAAAATGAACAATCTTCGCGTAATTAT  120
            ||||||||||||||| ||||| | |  | |||||||||||||||| ||||||||||||||
Sbjct  65   AGAAGGAATCGGTTTTAAAAC-TCA--A-AGAGAAAAATGAACAACCTTCGCGTAATTAT  120

Query  121  AG-CTGTGTTATTGGCCGTTCTTGTCTTCACCGCGACTGTTTCAGAGTCTGCGGAGGAAA  179
             | | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct  121  -GTCAGTGTTATTGGCCGTTCTTGTCTTCACAGCGACTGTTTCAGAGTCTGCAGAGGAAA  179

Query  180  TGGGAAAAGGG-GATGTCACAATCTCACTTAAATGCAAAACGAAAACGGAATGCTTAAAG  238
            |||| || ||| || |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  180  TGGGGAA-GGGTGAGGTCACAATCTCACTTAGATGCAAAACGAAAACAGAATGCTTAAAG  238

Query  239  AACATTGCGTGTGAGGCTTGTGTCGATTGTCGATGCGATAGTGGAACTTGTAAATGCCAT  298
            |||||||| ||||| |||||||||||||||||||||||||  |||| |||||||||||||
Sbjct  239  AACATTGCCTGTGAAGCTTGTGTCGATTGTCGATGCGATAAAGGAATTTGTAAATGCCAT  298

Query  299  GGTTTCACAGCAGAAACCAATAATCCAACCGTTTAA  334
            |||||||||||||||||||| |||||||||||||||
Sbjct  299  GGTTTCACAGCAGAAACCAACAATCCAACCGTTTAA  334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15583002190


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5