BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471522
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13610.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1749 0.0
> AT1G13610.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:4663831-4666017 REVERSE LENGTH=1296
Length=1296
Score = 1749 bits (947), Expect = 0.0
Identities = 1062/1118 (95%), Gaps = 6/1118 (1%)
Strand=Plus/Plus
Query 1 TTGAGTGAAATGGGAATTGCGACGTCGACGATGGCGGCGAAGTTAGCATTCTTCCCACCA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 34 TTGAGTGAAATGGGAATTGCGACGTCGACTATGGCGGCGAAGTTAGCATTCTTCCCACCA 93
Query 61 AATCCGCCGTCGTACACGGTGGTGACTGAGGAATCAACGGGGAAGATGAGGATTTCTACG 120
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 94 AATCCGCCGTCGTACACGGTGGTGACTGAAGAATCTACGGGGAAGATGATGATTTCTACG 153
Query 121 AACATGCCGCATTACCTAAGAGATGAGAACATCGAAGTGGTGAAGATAAGGACGAGAAGA 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 154 AACCTGCCGCATTACCTAAGAGATGAGAACATCGAAGTGGTGAAGATAAGGACAAAAAGA 213
Query 181 GGGAATGAGATTGTGGCCATGTATGTGAAAAATCCAACCGCTAAACTCACCGTTTTGTTT 240
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 214 GGGAATGAGATTGTGGCCATGTATGTGAAGAATCCAACCGCTAAACTCACTGTTTTGTTT 273
Query 241 TCTCATGGCAACGCCGCTGATCTTGCTCACATTTTCTACATCTTCGCTGAACTAATTCAA 300
|||||||||||||| | ||||||||||| |||||||||||||| || ||||||||||||
Sbjct 274 TCTCATGGCAACGCTTCCGATCTTGCTCAGATTTTCTACATCTTAGCGGAACTAATTCAA 333
Query 301 CTCAATGTCAATCTCATGGGATATGATTACTCAGGATATGGGCAATCTTCTGGTAAGCCA 360
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 334 CTCAATGTCAATCTCATGGGATACGATTATTCAGGATATGGGCAATCTTCTGGTAAGCCA 393
Query 361 AGCGAGCAAGAGACGTACGCAGATATCGAAGCAGCTCACAATTGGCTAAGAGAGACGTAT 420
||||||||||| ||||||||||| || ||||||||| |||||||||||||| |||| ||
Sbjct 394 AGCGAGCAAGATACGTACGCAGACATAGAAGCAGCTTACAATTGGCTAAGACAGACCTAC 453
Query 421 GGTACAAAAGATGAACGTATCATTTTGTATGGACAATCCGTTGGAAGTGGACCGTCGCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GGTACAAAAGATGAACGTATCATTTTGTATGGACAATCCGTTGGAAGTGGACCGTCGCTT 513
Query 481 GAGCTAGCTTCTCGTCTTCCACGTCTCCGAGCACTTGTTCTTCATAGTCCTTTCTTGTCC 540
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 514 GAGCTTGCTTCTCGTCTTCCACGTCTCCGAGCACTTGTTCTCCATAGTCCTTTCTTGTCT 573
Query 541 GGTCTACGTGTCATGTACCCTCTCAAGCACTCCTTCCCGTTCGACATTTACAAGAATATC 600
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 574 GGTCTACGTGTTATGTACCCTGTCAAGCACTCCTTCCCGTTCGACATTTACAAGAATATT 633
Query 601 GACAAAATTCATCTCGTAAACTGTCCTGTTCTTGTAATTCATGGAACAGATGACGACGTG 660
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 634 GACAAAATTCATCTCGTGGAGTGTCCTGTTCTTGTAATTCATGGAACAGATGACGATGTG 693
Query 661 GTGAATATTTCACATGGAAAACATTTATGGGGACTATGCAAAGAAAAATATGAACCCTTG 720
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 694 GTGAATATTTCACATGGAAAACATTTATGGGGACTATGCAAAGAAAAATACGAACCCTTA 753
Query 721 TGGCTTAAAGGAAGAGGCCATTGTGATATTGAGACGTCTCCTGAGTACTTACCTCACTTA 780
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 754 TGGCTTAAAGGAAGAGGCCATTCTGATATTGAGATGTCTCCTGAGTACTTACCTCACTTA 813
Query 781 AGAAAGTTCATTTCAGCCATTGAGAAGCTTCCAGTTCCAAAATTCCGACGCCTATCATTG 840
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 814 AGAAAGTTCATTTCAGCCATTGAGAAGCTTCCAGTTCCAAAATTTCGACGCCAATCATTG 873
Query 841 GCTGATGACCACAAGAAAGAGAAATCAACAAAGAGTAGTAATTGGATTGGATCTAGACAT 900
||| ||||||||||||| || |||||||| |||||||| ||||||||||||||||||
Sbjct 874 GCTAATGACCACAAGAACGACAAATCAACGAAGAGTAG---CTGGATTGGATCTAGACAT 930
Query 901 AGCATAGAATGTGTTACTACTGCAAGAGACAAATCAAGAAAGATTAGTATCGATCATCGG 960
||||||||||||||| | || | |||||||||||||||||||| |||||||||||||||
Sbjct 931 AGCATAGAATGTGTT-C--CTCCTAGAGACAAATCAAGAAAGATAAGTATCGATCATCGG 987
Query 961 TTTGGGAAGGCGAGAAACAGCGTGGATAGCTCTGATCGGGCTAGGAATAGCTTCGACAGG 1020
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 988 TTTGGGAAGCCGAGAAACAGCGTGGGTAGCTCTGATCGGGCTAGGAATAGCTTCGACAGG 1047
Query 1021 TTGGGTGAAATGGTGAGATCAGTTCGGTTGTGTAATGTTGATTGTGTGAAGAATGCAGTT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TTGGGTGAAATGGTGAGATCAGTTCGGTTGTGTAATGTTGATTGTGTGAAGAATGCAGTT 1107
Query 1081 GCAGAGGTTTGATGATTGTTGTCACAATATTGTTTTTT 1118
||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GCAGAGGTTTGATGATTGTTGTCACAATATTGTTTTTT 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5