BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471524
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13620.1 | Symbols: RGF2 | Encodes a root meristem growth fa... 558 2e-158
> AT1G13620.1 | Symbols: RGF2 | Encodes a root meristem growth
factor (RGF). Belongs to a family of functionally redundant
homologous peptides that are secreted, tyrosine-sulfated, and
expressed mainly in the stem cell area and the innermost
layer of central columella cells. RGFs are required for maintenance
of the root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4),
At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830
(RGF8) and At5g64770 (RGF9). | chr1:4668443-4669471
FORWARD LENGTH=627
Length=627
Score = 558 bits (302), Expect = 2e-158
Identities = 363/391 (93%), Gaps = 9/391 (2%)
Strand=Plus/Plus
Query 1 TCATAACTCATTTTGAGAACA-TTTTCGTAGCTAAGGGAAGAAAATAAGAGATGACCAAT 59
||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct 1 TCACAACTCATTTTGAGAACATTTTTCGTAGCTAAGAGAAGAAAATAAGACATGACCAAT 60
Query 60 GTCACTTCAAGCTTTCTGTGTTTGTTGATCCTTCTTTTGTTTCGCCTCTCCTTTGGATAT 119
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 61 ATCACTTCAAGCTTTCTGTGTTTGTTGATCCTTCTTTTGTTTTGCCTCTCTTTTGGATAT 120
Query 120 TCTCTTCATGGAGATAAGGATGAAGTG-TCAAGTGTTGAAGTCGGTTCAAATGCAAAGGT 178
||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 121 TCTCTTCATGGTGATAAGGATGAAGTGCT-AAGTGTTGACGTCGGTTCAAATGCAAAGGT 179
Query 179 TATGAAGCATCTTGATGATAATGATGATGATGCAATGAAGAAGGCACAAGTACGAGGAAG 238
||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 180 TATGAAGCATCTTGATG-----G-TGATGATGCAATGAAGAAGGCGCAAGTACGAGGAAG 233
Query 239 AATTGGAGAAGAGTTTAGTAAGGAAAAGACAATGATGATGATGAAGAAGACAACGAATAA 298
|| |||| |||||||||| ||||||| ||||| ||||||||||||||||||||| || ||
Sbjct 234 AAGTGGACAAGAGTTTAGCAAGGAAACGACAAAGATGATGATGAAGAAGACAACAAAGAA 293
Query 299 AGAGACAAGTGTTGAGGAAGAGGATGATCTCGTTGCCTACACTGCTGACTACTGGAAACC 358
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 294 AGAGACAAATGTTGAGGAAGAGGATGATCTCGTTGCCTACACTGCTGATTACTGGAAACC 353
Query 359 AAGGCACCATCCTCCCAAGAACAACTGATCA 389
|||||||||||||||||| ||||||||||||
Sbjct 354 AAGGCACCATCCTCCCAAAAACAACTGATCA 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5